Rmu_sc0000791.1_g000066

calcium ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000791.1
OG0000732
Physical Location & Seq
Forward (+)
242505 .. 243151
647 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000791.1_g000066.1.cds

Sequence Viewer

Length: 297 bp
atggtgcgtgatcatgtcactcatgtgactaagggtcttccgtacactgagcagcagatcagaaatactttcaaaggttttgacctgaatggagacggcaaactgtcctgggatgaggtgaaggctgcgttcgctaaactcggggcgtgtttgcccgactacagagcttggcgaggacgaagctgtgccgatgccgacaaggatggcttcatctggcgacctaccgatccacctcttgatcatagccttcaacatgtgggcatggaatttcatccaataatagaggggcttaaatag

Protein Analysis

98

Amino Acids

11.12

Weight (kDa)

6.49

Isoelectric Point (pI)

29.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000732)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g34500 FvH4_2g34510 FvH4_2g34530
prunus_persica Prupe.1G436400_v2.0.a1 Prupe.1G436500_v2.0.a1 Prupe.1G436600_v2.0.a1 Prupe.1G436700_v2.0.a1 Prupe.1G436800_v2.0.a1 Prupe.1G436900_v2.0.a1 Prupe.1G437000_v2.0.a1 Prupe.1G437100_v2.0.a1 Prupe.1G437200_v2.0.a1
pyrus_communis pycom08g08330 pycom08g08350 pycom08g08360 pycom08g08370 pycom08g08380 pycom15g07870 pycom15g07900
rosa_chinensis RchiOBHm_Chr3g0490571 RchiOBHm_Chr6g0278301 RchiOBHm_Chr6g0278331 RchiOBHm_Chr6g0307631 RchiOBHm_Chr6g0307841 RchiOBHm_Chr7g0227521
rosa_laevigata RLG00000001641 RLG00000006852 RLG00000010696 RLG00000010698 RLG00000010699 RLG00000010700 RLG00000013236
rosa_multiflora Rmu_co8134650.1_g000001 Rmu_sc0000031.1_g000033 Rmu_sc0000031.1_g000046 Rmu_sc0000791.1_g000066 Rmu_sc0001016.1_g000015 Rmu_sc0001016.1_g000032 Rmu_sc0001772.1_g000026 Rmu_sc0001772.1_g000027 Rmu_sc0001772.1_g000034 Rmu_sc0001772.1_g000067 Rmu_sc0003252.1_g000012 Rmu_sc0003862.1_g000006
rosa_roxburghii Rroxscaffold_1G00006670 Rroxscaffold_3G00232100 Rroxscaffold_5G00373780 Rroxscaffold_6G00393410 Rroxscaffold_7G00160830 Rroxscaffold_7G00160860 Rroxscaffold_7G00160880 Rroxscaffold_7G00190470
rosa_rugosa Rorug03G0243900 Rorug04G0257200 Rorug06G0116100 Rorug06G0361100 Rorug06G0361200 Rorug06G0361200 Rorug06G0361300
rosa_samantha Rh2AG314100 Rh4AG313500 Rh6BG229500 Rh6BG480600 Rh6BG480800 Rh6BG480900 Rh6BG481100 Rh7AG392700 Rh7AG394500 Rh7AG394600 Rh7AG394700 Rh7CG412100
rosa_wichuraiana Rw0G001040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 221
AcsI RAATTY 1 cut(s) 266
AfaI GTAC 1 cut(s) 44
AflIII ACRYGT 1 cut(s) 253
AgsI TTSAA 2 cut(s) 73, 251
AhdI GACNNNNNGTC 1 cut(s) 33
AjnI CCWGG 1 cut(s) 107
AleI CACNNNNGTG 1 cut(s) 23
AluBI AGCT 2 cut(s) 167, 183
AluI AGCT 2 cut(s) 167, 183
Alw26I GTCTC 1 cut(s) 87
AlwI GGATC 1 cut(s) 221
Ama87I CYCGRG 1 cut(s) 140
ApeKI GCWGC 2 cut(s) 52, 125
ApoI RAATTY 1 cut(s) 266
AsuHPI GGTGA 1 cut(s) 130
AvaI CYCGRG 1 cut(s) 140
BbsI GAAGAC 1 cut(s) 29
BbvI GCAGC 2 cut(s) 64, 112
BccI CCATC 1 cut(s) 197
BceAI ACGGC 1 cut(s) 112
BciT130I CCWGG 1 cut(s) 109
BclI TGATCA 2 cut(s) 10, 238
BcoDI GTCTC 1 cut(s) 87
BfmI CTRYAG 1 cut(s) 160
BisI GCNGC 2 cut(s) 53, 126
BlsI GCNGC 2 cut(s) 54, 127
Bme1390I CCNGG 1 cut(s) 109
BmeRI GACNNNNNGTC 1 cut(s) 33
BmeT110I CYCGRG 1 cut(s) 140
BmrFI CCNGG 1 cut(s) 109
BmsI GCATC 1 cut(s) 181
BpiI GAAGAC 1 cut(s) 29
BsaJI CCNNGG 1 cut(s) 108
BseBI CCWGG 1 cut(s) 109
BseDI CCNNGG 1 cut(s) 108
BseGI GGATG 3 cut(s) 118, 208, 271
BseMII CTCAG 1 cut(s) 39
BseXI GCAGC 2 cut(s) 64, 112
BsiHKCI CYCGRG 1 cut(s) 140
BsmAI GTCTC 1 cut(s) 87
BsmBI CGTCTC 1 cut(s) 87
BsoBI CYCGRG 1 cut(s) 140
Bsp143I GATC 4 cut(s) 10, 57, 226, 238
BspCNI CTCAG 1 cut(s) 40
BspPI GGATC 1 cut(s) 221
BssECI CCNNGG 1 cut(s) 108
BssMI GATC 4 cut(s) 10, 57, 226, 238
Bst2UI CCWGG 1 cut(s) 109
Bst4CI ACNGT 1 cut(s) 105
BstDEI CTNAG 2 cut(s) 30, 48
BstF5I GGATG 3 cut(s) 118, 208, 271
BstKTI GATC 4 cut(s) 13, 60, 229, 241
BstMAI GTCTC 1 cut(s) 87
BstMBI GATC 4 cut(s) 10, 57, 226, 238
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstNI CCWGG 1 cut(s) 109
BstNSI RCATGY 1 cut(s) 257
BstSCI CCNGG 1 cut(s) 107
BstSFI CTRYAG 1 cut(s) 160
BstV1I GCAGC 2 cut(s) 64, 112
BstV2I GAAGAC 1 cut(s) 29
BtsCI GGATG 3 cut(s) 118, 208, 271
BtsIMutI CAGTG 1 cut(s) 45
Csp6I GTAC 1 cut(s) 43
CviAII CATG 4 cut(s) 14, 23, 254, 262
CviJI RGCY 6 cut(s) 125, 167, 183, 207, 246, 289
CviKI_1 RGCY 6 cut(s) 125, 167, 183, 207, 246, 289
CviQI GTAC 1 cut(s) 43
DdeI CTNAG 2 cut(s) 30, 48
DpnI GATC 4 cut(s) 12, 59, 228, 240
DpnII GATC 4 cut(s) 10, 57, 226, 238
DriI GACNNNNNGTC 1 cut(s) 33
Eam1105I GACNNNNNGTC 1 cut(s) 33
Eco88I CYCGRG 1 cut(s) 140
EcoRII CCWGG 1 cut(s) 107
Esp3I CGTCTC 1 cut(s) 87
FaeI CATG 4 cut(s) 17, 26, 257, 265
FaiI YATR 5 cut(s) 15, 24, 243, 255, 263
FalI AAGNNNNNCTT 2 cut(s) 191, 223
FatI CATG 4 cut(s) 13, 22, 253, 261
FbaI TGATCA 2 cut(s) 10, 238
Fnu4HI GCNGC 2 cut(s) 53, 126
FokI GGATG 3 cut(s) 125, 215, 258
Fsp4HI GCNGC 2 cut(s) 53, 126
GluI GCNGC 2 cut(s) 53, 126
Hin1II CATG 4 cut(s) 17, 26, 257, 265
HphI GGTGA 1 cut(s) 130
Hpy166II GTNNAC 1 cut(s) 45
Hpy188I TCNGA 1 cut(s) 62
Hpy188III TCNNGA 1 cut(s) 236
Hpy8I GTNNAC 1 cut(s) 45
HpyAV CCTTC 2 cut(s) 115, 257
HpyCH4III ACNGT 1 cut(s) 105
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpyF3I CTNAG 2 cut(s) 30, 48
Hsp92II CATG 4 cut(s) 17, 26, 257, 265
Ksp22I TGATCA 2 cut(s) 10, 238
Kzo9I GATC 4 cut(s) 10, 57, 226, 238
LpnPI CCDG 4 cut(s) 94, 98, 121, 199
Lsp1109I GCAGC 2 cut(s) 64, 112
LweI GCATC 1 cut(s) 181
MaeIII GTNAC 2 cut(s) 16, 25
MalI GATC 4 cut(s) 12, 59, 228, 240
MboI GATC 4 cut(s) 10, 57, 226, 238
MboII GAAGA 1 cut(s) 29
MluCI AATT 1 cut(s) 266
MnlI CCTC 4 cut(s) 109, 167, 243, 277
MseI TTAA 1 cut(s) 291
MslI CAYNNNNRTG 1 cut(s) 23
MspR9I CCNGG 1 cut(s) 109
MvaI CCWGG 1 cut(s) 109
MwoI GCNNNNNNNGC 1 cut(s) 131
NdeII GATC 4 cut(s) 10, 57, 226, 238
NlaIII CATG 4 cut(s) 17, 26, 257, 265
NmuCI GTSAC 2 cut(s) 16, 25
NspI RCATGY 1 cut(s) 257
OliI CACNNNNGTG 1 cut(s) 23
PciI ACATGT 1 cut(s) 253
PkrI GCNGC 2 cut(s) 54, 127
PscI ACATGT 1 cut(s) 253
Psp6I CCWGG 1 cut(s) 107
PspGI CCWGG 1 cut(s) 107
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
RseI CAYNNNNRTG 1 cut(s) 23
SaqAI TTAA 1 cut(s) 291
SatI GCNGC 2 cut(s) 53, 126
Sau3AI GATC 4 cut(s) 10, 57, 226, 238
ScrFI CCNGG 1 cut(s) 109
SetI ASST 7 cut(s) 79, 87, 120, 169, 185, 223, 235
SfaNI GCATC 1 cut(s) 181
SfcI CTRYAG 1 cut(s) 160
SmiMI CAYNNNNRTG 1 cut(s) 23
Sse9I AATT 1 cut(s) 266
StyD4I CCNGG 1 cut(s) 107
TaaI ACNGT 1 cut(s) 105
TasI AATT 1 cut(s) 266
Tru1I TTAA 1 cut(s) 291
Tru9I TTAA 1 cut(s) 291
TscAI CASTG 1 cut(s) 52
TseFI GTSAC 2 cut(s) 16, 25
TseI GCWGC 2 cut(s) 52, 125
Tsp45I GTSAC 2 cut(s) 16, 25
TspDTI ATGAA 2 cut(s) 199, 260
TspGWI ACGGA 1 cut(s) 30
TspRI CASTG 1 cut(s) 52
XapI RAATTY 1 cut(s) 266
XceI RCATGY 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.