Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001772.1

Orthogroup ID

OG0000732

Physical Location & Seq

Genomic Coordinates Forward (+)

144235 .. 144534

Gene Structure 300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001772.1_g000034.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

atgcctcggcaaagagagtccataagtggaaaagatgataagaataaatgtcctgatgtttcgtacactgagcagcagatcataaatattttcaagagctttgacctgaacggagacggcaagctgtcctgggatgaggtgaaggctgcgttcgctaaactcggggcattttgtcccaactacagagcttggcaaggacaaaggcgtgctgatgccgacaaggatggcttcgtctctcttgagaccgaactcgatgaacttgtcacctataccctaaaacaagggtataaaccaaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0016020 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7

Protein Analysis

99

Amino Acids

11.31

Weight (kDa)

6.25

Isoelectric Point (pI)

26.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000732)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g34500 FvH4_2g34510 FvH4_2g34530
prunus_persica	Prupe.1G436400_v2.0.a1 Prupe.1G436500_v2.0.a1 Prupe.1G436600_v2.0.a1 Prupe.1G436700_v2.0.a1 Prupe.1G436800_v2.0.a1 Prupe.1G436900_v2.0.a1 Prupe.1G437000_v2.0.a1 Prupe.1G437100_v2.0.a1 Prupe.1G437200_v2.0.a1
pyrus_communis	pycom08g08330 pycom08g08350 pycom08g08360 pycom08g08370 pycom08g08380 pycom15g07870 pycom15g07900
rosa_chinensis	RchiOBHm_Chr3g0490571 RchiOBHm_Chr6g0278301 RchiOBHm_Chr6g0278331 RchiOBHm_Chr6g0307631 RchiOBHm_Chr6g0307841 RchiOBHm_Chr7g0227521
rosa_laevigata	RLG00000001641 RLG00000006852 RLG00000010696 RLG00000010698 RLG00000010699 RLG00000010700 RLG00000013236
rosa_multiflora	Rmu_co8134650.1_g000001 Rmu_sc0000031.1_g000033 Rmu_sc0000031.1_g000046 Rmu_sc0000791.1_g000066 Rmu_sc0001016.1_g000015 Rmu_sc0001016.1_g000032 Rmu_sc0001772.1_g000026 Rmu_sc0001772.1_g000027 Rmu_sc0001772.1_g000034 Rmu_sc0001772.1_g000067 Rmu_sc0003252.1_g000012 Rmu_sc0003862.1_g000006
rosa_roxburghii	Rroxscaffold_1G00006670 Rroxscaffold_3G00232100 Rroxscaffold_5G00373780 Rroxscaffold_6G00393410 Rroxscaffold_7G00160830 Rroxscaffold_7G00160860 Rroxscaffold_7G00160880 Rroxscaffold_7G00190470
rosa_rugosa	Rorug03G0243900 Rorug04G0257200 Rorug06G0116100 Rorug06G0361100 Rorug06G0361200 Rorug06G0361200 Rorug06G0361300
rosa_samantha	Rh2AG314100 Rh4AG313500 Rh6BG229500 Rh6BG480600 Rh6BG480800 Rh6BG480900 Rh6BG481100 Rh7AG392700 Rh7AG394500 Rh7AG394600 Rh7AG394700 Rh7CG412100
rosa_wichuraiana	Rw0G001040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	65
AgsI	TTSAA	1 cut(s)	94
AjnI	CCWGG	1 cut(s)	128
AluBI	AGCT	3 cut(s)	99, 124, 188
AluI	AGCT	3 cut(s)	99, 124, 188
Alw26I	GTCTC	3 cut(s)	108, 236, 238
Ama87I	CYCGRG	1 cut(s)	161
ApeKI	GCWGC	2 cut(s)	73, 146
AsuHPI	GGTGA	2 cut(s)	151, 256
AvaI	CYCGRG	1 cut(s)	161
BbvI	GCAGC	2 cut(s)	85, 133
BccI	CCATC	1 cut(s)	218
BceAI	ACGGC	1 cut(s)	133
BciT130I	CCWGG	1 cut(s)	130
BcoDI	GTCTC	3 cut(s)	108, 236, 238
BfmI	CTRYAG	1 cut(s)	181
BisI	GCNGC	2 cut(s)	74, 147
BlsI	GCNGC	2 cut(s)	75, 148
Bme1390I	CCNGG	1 cut(s)	130
BmeT110I	CYCGRG	1 cut(s)	161
BmrFI	CCNGG	1 cut(s)	130
BmsI	GCATC	1 cut(s)	202
BpuEI	CTTGAG	1 cut(s)	260
BsaI	GGTCTC	1 cut(s)	236
BsaJI	CCNNGG	2 cut(s)	5, 129
BseBI	CCWGG	1 cut(s)	130
BseDI	CCNNGG	2 cut(s)	5, 129
BseGI	GGATG	2 cut(s)	139, 229
BseMII	CTCAG	1 cut(s)	60
BseXI	GCAGC	2 cut(s)	85, 133
BsiHKCI	CYCGRG	1 cut(s)	161
BslFI	GGGAC	1 cut(s)	159
BsmAI	GTCTC	3 cut(s)	108, 236, 238
BsmBI	CGTCTC	2 cut(s)	108, 238
BsmFI	GGGAC	1 cut(s)	159
Bso31I	GGTCTC	1 cut(s)	236
BsoBI	CYCGRG	1 cut(s)	161
Bsp143I	GATC	1 cut(s)	78
BspCNI	CTCAG	1 cut(s)	61
BspTNI	GGTCTC	1 cut(s)	236
BssECI	CCNNGG	2 cut(s)	5, 129
BssMI	GATC	1 cut(s)	78
Bst2UI	CCWGG	1 cut(s)	130
BstC8I	GCNNGC	2 cut(s)	122, 207
BstDEI	CTNAG	1 cut(s)	69
BstF5I	GGATG	2 cut(s)	139, 229
BstKTI	GATC	1 cut(s)	81
BstMAI	GTCTC	3 cut(s)	108, 236, 238
BstMBI	GATC	1 cut(s)	78
BstMWI	GCNNNNNNNGC	1 cut(s)	152
BstNI	CCWGG	1 cut(s)	130
BstSCI	CCNGG	1 cut(s)	128
BstSFI	CTRYAG	1 cut(s)	181
BstV1I	GCAGC	2 cut(s)	85, 133
BtsCI	GGATG	2 cut(s)	139, 229
BtsIMutI	CAGTG	1 cut(s)	66
Cac8I	GCNNGC	2 cut(s)	122, 207
Csp6I	GTAC	1 cut(s)	64
CviJI	RGCY	5 cut(s)	99, 124, 146, 188, 228
CviKI_1	RGCY	5 cut(s)	99, 124, 146, 188, 228
CviQI	GTAC	1 cut(s)	64
DdeI	CTNAG	1 cut(s)	69
DpnI	GATC	1 cut(s)	80
DpnII	GATC	1 cut(s)	78
Eco31I	GGTCTC	1 cut(s)	236
Eco88I	CYCGRG	1 cut(s)	161
EcoRII	CCWGG	1 cut(s)	128
Esp3I	CGTCTC	2 cut(s)	108, 238
FaiI	YATR	4 cut(s)	23, 83, 270, 288
FalI	AAGNNNNNCTT	2 cut(s)	212, 244
FaqI	GGGAC	1 cut(s)	159
Fnu4HI	GCNGC	2 cut(s)	74, 147
FokI	GGATG	2 cut(s)	146, 236
Fsp4HI	GCNGC	2 cut(s)	74, 147
GluI	GCNGC	2 cut(s)	74, 147
HinfI	GANTC	1 cut(s)	17
HphI	GGTGA	2 cut(s)	151, 256
Hpy166II	GTNNAC	1 cut(s)	66
Hpy188III	TCNNGA	3 cut(s)	53, 94, 239
Hpy8I	GTNNAC	1 cut(s)	66
HpyAV	CCTTC	1 cut(s)	136
HpyF10VI	GCNNNNNNNGC	1 cut(s)	152
HpyF3I	CTNAG	1 cut(s)	69
Kzo9I	GATC	1 cut(s)	78
LpnPI	CCDG	4 cut(s)	66, 115, 119, 142
Lsp1109I	GCAGC	2 cut(s)	85, 133
LweI	GCATC	1 cut(s)	202
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	1 cut(s)	80
MboI	GATC	1 cut(s)	78
MlyI	GAGTC	1 cut(s)	26
MnlI	CCTC	2 cut(s)	15, 130
MspR9I	CCNGG	1 cut(s)	130
MvaI	CCWGG	1 cut(s)	130
MwoI	GCNNNNNNNGC	1 cut(s)	152
NdeII	GATC	1 cut(s)	78
NmuCI	GTSAC	1 cut(s)	262
PkrI	GCNGC	2 cut(s)	75, 148
PleI	GAGTC	1 cut(s)	25
PpsI	GAGTC	1 cut(s)	25
Psp6I	CCWGG	1 cut(s)	128
PspGI	CCWGG	1 cut(s)	128
RsaI	GTAC	1 cut(s)	65
RsaNI	GTAC	1 cut(s)	64
SatI	GCNGC	2 cut(s)	74, 147
Sau3AI	GATC	1 cut(s)	78
SchI	GAGTC	1 cut(s)	26
ScrFI	CCNGG	1 cut(s)	130
SetI	ASST	6 cut(s)	101, 108, 126, 141, 190, 269
SfaNI	GCATC	1 cut(s)	202
SfcI	CTRYAG	1 cut(s)	181
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
SspI	AATATT	1 cut(s)	88
StyD4I	CCNGG	1 cut(s)	128
TaqI	TCGA	1 cut(s)	252
TaqII	GACCGA	1 cut(s)	260
TscAI	CASTG	1 cut(s)	73
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	2 cut(s)	73, 146
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	1 cut(s)	270
TspGWI	ACGGA	1 cut(s)	126
TspRI	CASTG	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.