pycom08g08330

calcium ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0000732
Physical Location & Seq
Forward (+)
6691131 .. 6691595
465 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g08330.2

Sequence Viewer

Length: 402 bp
ATGGATTGTTTATTGGTAGTTCTGATCTCTGATTGCAATATAATATTATTATACACAGGGCCAGGTGGCCAGTGTGTAGAACACAACACAGAAAATTTCAAGATCATTATATATCTATACAGTATCATGGGTAGGAACGACTGTTATAAGAGGCCAGCCAGAGTTCCACGGACTAGGGAGCAAGTGGTGGATCTCTTCAATAGTTTTGACAAGGACGGCGACGGCATGCTGTCAAAAGAGGAGCTGAAGGCAGCGTTCAAGGAGCTCGGGTCGCGTTGGGGCGGTTTCAGGGCGAGGAGAGCTTTGAGTCATGCAGATGCCAACCATGACGGACTCATTTCTAAAGAGGAGATCAAAGACCTTGTCAACTATGCCCTAGAATGTGGGTATACGCTAAATTAA

Protein Analysis

134

Amino Acids

15.06

Weight (kDa)

5.9

Isoelectric Point (pI)

38.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000732)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g34500 FvH4_2g34510 FvH4_2g34530
prunus_persica Prupe.1G436400_v2.0.a1 Prupe.1G436500_v2.0.a1 Prupe.1G436600_v2.0.a1 Prupe.1G436700_v2.0.a1 Prupe.1G436800_v2.0.a1 Prupe.1G436900_v2.0.a1 Prupe.1G437000_v2.0.a1 Prupe.1G437100_v2.0.a1 Prupe.1G437200_v2.0.a1
pyrus_communis pycom08g08330 pycom08g08350 pycom08g08360 pycom08g08370 pycom08g08380 pycom15g07870 pycom15g07900
rosa_chinensis RchiOBHm_Chr3g0490571 RchiOBHm_Chr6g0278301 RchiOBHm_Chr6g0278331 RchiOBHm_Chr6g0307631 RchiOBHm_Chr6g0307841 RchiOBHm_Chr7g0227521
rosa_laevigata RLG00000001641 RLG00000006852 RLG00000010696 RLG00000010698 RLG00000010699 RLG00000010700 RLG00000013236
rosa_multiflora Rmu_co8134650.1_g000001 Rmu_sc0000031.1_g000033 Rmu_sc0000031.1_g000046 Rmu_sc0000791.1_g000066 Rmu_sc0001016.1_g000015 Rmu_sc0001016.1_g000032 Rmu_sc0001772.1_g000026 Rmu_sc0001772.1_g000027 Rmu_sc0001772.1_g000034 Rmu_sc0001772.1_g000067 Rmu_sc0003252.1_g000012 Rmu_sc0003862.1_g000006
rosa_roxburghii Rroxscaffold_1G00006670 Rroxscaffold_3G00232100 Rroxscaffold_5G00373780 Rroxscaffold_6G00393410 Rroxscaffold_7G00160830 Rroxscaffold_7G00160860 Rroxscaffold_7G00160880 Rroxscaffold_7G00190470
rosa_rugosa Rorug03G0243900 Rorug04G0257200 Rorug06G0116100 Rorug06G0361100 Rorug06G0361200 Rorug06G0361200 Rorug06G0361300
rosa_samantha Rh2AG314100 Rh4AG313500 Rh6BG229500 Rh6BG480600 Rh6BG480800 Rh6BG480900 Rh6BG481100 Rh7AG392700 Rh7AG394500 Rh7AG394600 Rh7AG394700 Rh7CG412100
rosa_wichuraiana Rw0G001040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 147
AccI GTMKAC 1 cut(s) 389
AccII CGCG 1 cut(s) 274
AciI CCGC 1 cut(s) 282
AclWI GGATC 1 cut(s) 198
AcoI YGGCCR 1 cut(s) 67
AcsI RAATTY 1 cut(s) 94
AcuI CTGAAG 1 cut(s) 266
AgsI TTSAA 3 cut(s) 100, 199, 259
AjnI CCWGG 1 cut(s) 61
AluBI AGCT 3 cut(s) 244, 265, 302
AluI AGCT 3 cut(s) 244, 265, 302
Alw21I GWGCWC 1 cut(s) 267
AlwI GGATC 1 cut(s) 198
Ama87I CYCGRG 1 cut(s) 266
AoxI GGCC 3 cut(s) 59, 67, 152
ApeKI GCWGC 1 cut(s) 251
ApoI RAATTY 1 cut(s) 94
ArsI GACNNNNNNTTYG 2 cut(s) 348, 380
AspS9I GGNCC 1 cut(s) 59
AvaI CYCGRG 1 cut(s) 266
BalI TGGCCA 1 cut(s) 69
BanII GRGCYC 1 cut(s) 267
Bbv12I GWGCWC 1 cut(s) 267
BbvI GCAGC 1 cut(s) 263
BceAI ACGGC 2 cut(s) 232, 238
BciT130I CCWGG 1 cut(s) 63
BfaI CTAG 2 cut(s) 174, 377
BisI GCNGC 1 cut(s) 252
BlsI GCNGC 1 cut(s) 253
Bme1390I CCNGG 1 cut(s) 63
BmeT110I CYCGRG 1 cut(s) 266
BmgT120I GGNCC 1 cut(s) 59
BmrFI CCNGG 1 cut(s) 63
BmsI GCATC 1 cut(s) 307
BsaJI CCNNGG 1 cut(s) 167
BsaXI ACNNNNNCTCC 2 cut(s) 254, 284
Bse1I ACTGG 1 cut(s) 70
BseBI CCWGG 1 cut(s) 63
BseDI CCNNGG 1 cut(s) 167
BseNI ACTGG 1 cut(s) 70
BseRI GAGGAG 3 cut(s) 254, 310, 362
BseXI GCAGC 1 cut(s) 263
Bsh1236I CGCG 1 cut(s) 274
BshFI GGCC 3 cut(s) 61, 69, 154
BsiHKAI GWGCWC 1 cut(s) 267
BsiHKCI CYCGRG 1 cut(s) 266
BsnI GGCC 3 cut(s) 61, 69, 154
BsoBI CYCGRG 1 cut(s) 266
Bsp1286I GDGCHC 1 cut(s) 267
Bsp143I GATC 4 cut(s) 24, 102, 190, 351
BspACI CCGC 1 cut(s) 282
BspANI GGCC 3 cut(s) 61, 69, 154
BspFNI CGCG 1 cut(s) 274
BspPI GGATC 1 cut(s) 198
BsrI ACTGG 1 cut(s) 70
BssECI CCNNGG 1 cut(s) 167
BssMI GATC 4 cut(s) 24, 102, 190, 351
BssNAI GTATAC 1 cut(s) 390
Bst1107I GTATAC 1 cut(s) 390
Bst2UI CCWGG 1 cut(s) 63
Bst4CI ACNGT 2 cut(s) 122, 143
Bst6I CTCTTC 1 cut(s) 200
BstC8I GCNNGC 2 cut(s) 156, 227
BstDSI CCRYGG 1 cut(s) 167
BstFNI CGCG 1 cut(s) 274
BstKTI GATC 4 cut(s) 27, 105, 193, 354
BstMBI GATC 4 cut(s) 24, 102, 190, 351
BstMWI GCNNNNNNNGC 2 cut(s) 271, 299
BstNI CCWGG 1 cut(s) 63
BstNSI RCATGY 1 cut(s) 229
BstSCI CCNGG 1 cut(s) 61
BstUI CGCG 1 cut(s) 274
BstV1I GCAGC 1 cut(s) 263
BstX2I RGATCY 1 cut(s) 190
BstYI RGATCY 1 cut(s) 190
BstZ17I GTATAC 1 cut(s) 390
BsuRI GGCC 3 cut(s) 61, 69, 154
BtgI CCRYGG 1 cut(s) 167
BtsIMutI CAGTG 1 cut(s) 77
Cac8I GCNNGC 2 cut(s) 156, 227
Cfr13I GGNCC 1 cut(s) 59
CviAII CATG 4 cut(s) 127, 226, 311, 326
CviJI RGCY 7 cut(s) 61, 69, 154, 158, 244, 265, 302
CviKI_1 RGCY 7 cut(s) 61, 69, 154, 158, 244, 265, 302
DpnI GATC 4 cut(s) 26, 104, 192, 353
DpnII GATC 4 cut(s) 24, 102, 190, 351
EaeI YGGCCR 1 cut(s) 67
Eam1104I CTCTTC 1 cut(s) 200
EarI CTCTTC 1 cut(s) 200
Ecl136II GAGCTC 1 cut(s) 265
Eco24I GRGCYC 1 cut(s) 267
Eco53kI GAGCTC 1 cut(s) 265
Eco57I CTGAAG 1 cut(s) 266
Eco88I CYCGRG 1 cut(s) 266
EcoICRI GAGCTC 1 cut(s) 265
EcoRII CCWGG 1 cut(s) 61
EcoT38I GRGCYC 1 cut(s) 267
FaeI CATG 4 cut(s) 130, 229, 314, 329
FatI CATG 4 cut(s) 126, 225, 310, 325
FblI GTMKAC 1 cut(s) 389
Fnu4HI GCNGC 1 cut(s) 252
FriOI GRGCYC 1 cut(s) 267
Fsp4HI GCNGC 1 cut(s) 252
FspBI CTAG 2 cut(s) 174, 377
GluI GCNGC 1 cut(s) 252
HaeIII GGCC 3 cut(s) 61, 69, 154
Hin1II CATG 4 cut(s) 130, 229, 314, 329
HincII GTYRAC 1 cut(s) 367
HindII GTYRAC 1 cut(s) 367
HinfI GANTC 2 cut(s) 307, 333
Hpy166II GTNNAC 2 cut(s) 367, 390
Hpy188I TCNGA 2 cut(s) 24, 31
Hpy188III TCNNGA 1 cut(s) 100
Hpy8I GTNNAC 2 cut(s) 367, 390
Hpy99I CGWCG 1 cut(s) 224
HpyAV CCTTC 1 cut(s) 241
HpyCH4III ACNGT 2 cut(s) 122, 143
HpyCH4V TGCA 2 cut(s) 36, 314
HpyF10VI GCNNNNNNNGC 2 cut(s) 271, 299
Hsp92II CATG 4 cut(s) 130, 229, 314, 329
Kzo9I GATC 4 cut(s) 24, 102, 190, 351
LmnI GCTCC 3 cut(s) 178, 241, 262
LpnPI CCDG 7 cut(s) 42, 48, 75, 83, 168, 172, 274
Lsp1109I GCAGC 1 cut(s) 263
LweI GCATC 1 cut(s) 307
MaeI CTAG 2 cut(s) 174, 377
MalI GATC 4 cut(s) 26, 104, 192, 353
MboI GATC 4 cut(s) 24, 102, 190, 351
MboII GAAGA 1 cut(s) 187
MflI RGATCY 1 cut(s) 190
MhlI GDGCHC 1 cut(s) 267
MlsI TGGCCA 1 cut(s) 69
MluCI AATT 2 cut(s) 94, 397
MluNI TGGCCA 1 cut(s) 69
MlyI GAGTC 2 cut(s) 316, 327
MnlI CCTC 4 cut(s) 144, 232, 288, 340
Mox20I TGGCCA 1 cut(s) 69
MscI TGGCCA 1 cut(s) 69
MseI TTAA 1 cut(s) 400
MslI CAYNNNNRTG 1 cut(s) 315
Msp20I TGGCCA 1 cut(s) 69
MspR9I CCNGG 1 cut(s) 63
MvaI CCWGG 1 cut(s) 63
MvnI CGCG 1 cut(s) 274
MwoI GCNNNNNNNGC 2 cut(s) 271, 299
NdeII GATC 4 cut(s) 24, 102, 190, 351
NlaIII CATG 4 cut(s) 130, 229, 314, 329
NspI RCATGY 1 cut(s) 229
PaeI GCATGC 1 cut(s) 229
PflFI GACNNNGTC 1 cut(s) 362
PkrI GCNGC 1 cut(s) 253
PleI GAGTC 2 cut(s) 315, 327
PpsI GAGTC 2 cut(s) 315, 327
PsiI TTATAA 1 cut(s) 147
Psp124BI GAGCTC 1 cut(s) 267
Psp6I CCWGG 1 cut(s) 61
PspGI CCWGG 1 cut(s) 61
PspPI GGNCC 1 cut(s) 59
PsuI RGATCY 1 cut(s) 190
PsyI GACNNNGTC 1 cut(s) 362
RseI CAYNNNNRTG 1 cut(s) 315
SacI GAGCTC 1 cut(s) 267
SaqAI TTAA 1 cut(s) 400
SatI GCNGC 1 cut(s) 252
Sau3AI GATC 4 cut(s) 24, 102, 190, 351
Sau96I GGNCC 1 cut(s) 59
SchI GAGTC 2 cut(s) 316, 327
ScrFI CCNGG 1 cut(s) 63
SduI GDGCHC 1 cut(s) 267
SetI ASST 5 cut(s) 67, 246, 267, 304, 363
SfaNI GCATC 1 cut(s) 307
SmiMI CAYNNNNRTG 1 cut(s) 315
SphI GCATGC 1 cut(s) 229
Sse9I AATT 2 cut(s) 94, 397
SsiI CCGC 1 cut(s) 282
SspI AATATT 1 cut(s) 45
SspMI CTAG 2 cut(s) 174, 377
SstI GAGCTC 1 cut(s) 267
StyD4I CCNGG 1 cut(s) 61
TaaI ACNGT 2 cut(s) 122, 143
TasI AATT 2 cut(s) 94, 397
Tru1I TTAA 1 cut(s) 400
Tru9I TTAA 1 cut(s) 400
TscAI CASTG 1 cut(s) 77
TseI GCWGC 1 cut(s) 251
TspGWI ACGGA 2 cut(s) 184, 345
TspRI CASTG 1 cut(s) 77
Tth111I GACNNNGTC 1 cut(s) 362
XapI RAATTY 1 cut(s) 94
XceI RCATGY 1 cut(s) 229
XmiI GTMKAC 1 cut(s) 389
XspI CTAG 2 cut(s) 174, 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.