Rh6BG481100

calcium ion binding

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Reverse (-)
68677544 .. 68678216
673 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG481100.1

Sequence Viewer

Length: 378 bp
ATGGTTAGGGATGTCGATCTTCCCTTTTCTGAACAAGAAATCGAACGATCTGCTTCTTTTTTTGTACCCGGCATGACCTACTGCCCTGAGCAGAAGGCCATTAAGAAGGTCCCAATTCACTGTATCAGCAAGGAGCAAGTCTGCGATTTTTTCCAAAGATTTGATAGGAACGGTGACGGCAAACTCTGCAAGGAAGAGATCAAGGCAGCCTTTCGGAAACTCGGATCACGTTGGAGCTCTTACAGAGCCTGGAGAGCATTAGACCATGCAGATTCCAATGGCGATGGCATCATCTCTAATGAGGAGCTCGACGACCTTATCAACTATGCCCTAGATTGTGGTTATAAGCTATTAGCGCCACATATATGTGTGTTATAA

Protein Analysis

125

Amino Acids

14.32

Weight (kDa)

5.59

Isoelectric Point (pI)

48.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_6 PF13405 49 - 75 5.1e-07 EF-hand domain
EF-hand_1 PF00036 49 - 74 3.8e-06 EF hand domain
EF-hand_5 PF13202 49 - 69 2.2e-06 EF hand
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000732)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g34500 FvH4_2g34510 FvH4_2g34530
prunus_persica Prupe.1G436400_v2.0.a1 Prupe.1G436500_v2.0.a1 Prupe.1G436600_v2.0.a1 Prupe.1G436700_v2.0.a1 Prupe.1G436800_v2.0.a1 Prupe.1G436900_v2.0.a1 Prupe.1G437000_v2.0.a1 Prupe.1G437100_v2.0.a1 Prupe.1G437200_v2.0.a1
pyrus_communis pycom08g08330 pycom08g08350 pycom08g08360 pycom08g08370 pycom08g08380 pycom15g07870 pycom15g07900
rosa_chinensis RchiOBHm_Chr3g0490571 RchiOBHm_Chr6g0278301 RchiOBHm_Chr6g0278331 RchiOBHm_Chr6g0307631 RchiOBHm_Chr6g0307841 RchiOBHm_Chr7g0227521
rosa_laevigata RLG00000001641 RLG00000006852 RLG00000010696 RLG00000010698 RLG00000010699 RLG00000010700 RLG00000013236
rosa_multiflora Rmu_co8134650.1_g000001 Rmu_sc0000031.1_g000033 Rmu_sc0000031.1_g000046 Rmu_sc0000791.1_g000066 Rmu_sc0001016.1_g000015 Rmu_sc0001016.1_g000032 Rmu_sc0001772.1_g000026 Rmu_sc0001772.1_g000027 Rmu_sc0001772.1_g000034 Rmu_sc0001772.1_g000067 Rmu_sc0003252.1_g000012 Rmu_sc0003862.1_g000006
rosa_roxburghii Rroxscaffold_1G00006670 Rroxscaffold_3G00232100 Rroxscaffold_5G00373780 Rroxscaffold_6G00393410 Rroxscaffold_7G00160830 Rroxscaffold_7G00160860 Rroxscaffold_7G00160880 Rroxscaffold_7G00190470
rosa_rugosa Rorug03G0243900 Rorug04G0257200 Rorug06G0116100 Rorug06G0361100 Rorug06G0361200 Rorug06G0361200 Rorug06G0361300
rosa_samantha Rh2AG314100 Rh4AG313500 Rh6BG229500 Rh6BG480600 Rh6BG480800 Rh6BG480900 Rh6BG481100 Rh7AG392700 Rh7AG394500 Rh7AG394600 Rh7AG394700 Rh7CG412100
rosa_wichuraiana Rw0G001040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 345, 376
AclWI GGATC 1 cut(s) 232
AfaI GTAC 1 cut(s) 66
AjnI CCWGG 1 cut(s) 248
AluBI AGCT 3 cut(s) 237, 307, 349
AluI AGCT 3 cut(s) 237, 307, 349
Alw21I GWGCWC 2 cut(s) 239, 309
AlwI GGATC 1 cut(s) 232
AlwNI CAGNNNCTG 1 cut(s) 249
AoxI GGCC 1 cut(s) 96
ApeKI GCWGC 1 cut(s) 206
AspLEI GCGC 1 cut(s) 358
AspS9I GGNCC 1 cut(s) 109
AsuC2I CCSGG 1 cut(s) 69
AsuHPI GGTGA 1 cut(s) 185
AvaII GGWCC 1 cut(s) 109
BanII GRGCYC 2 cut(s) 239, 309
Bbv12I GWGCWC 2 cut(s) 239, 309
BbvI GCAGC 1 cut(s) 218
BccI CCATC 1 cut(s) 278
BceAI ACGGC 1 cut(s) 193
BcgI CGANNNNNNTGC 2 cut(s) 32, 66
BciT130I CCWGG 1 cut(s) 250
BcnI CCSGG 1 cut(s) 69
BfaI CTAG 1 cut(s) 332
BfoI RGCGCY 1 cut(s) 359
BisI GCNGC 1 cut(s) 207
BlsI GCNGC 1 cut(s) 208
Bme1390I CCNGG 2 cut(s) 69, 250
Bme18I GGWCC 1 cut(s) 109
BmgT120I GGNCC 1 cut(s) 109
BmiI GGNNCC 1 cut(s) 111
BmrFI CCNGG 2 cut(s) 69, 250
BmsI GCATC 1 cut(s) 297
BpmI CTGGAG 1 cut(s) 271
Bpu10I CCTNAGC 1 cut(s) 87
BpuMI CCSGG 1 cut(s) 69
BsaBI GATNNNNATC 1 cut(s) 15
Bse8I GATNNNNATC 1 cut(s) 15
BseBI CCWGG 1 cut(s) 250
BseGI GGATG 1 cut(s) 16
BseJI GATNNNNATC 1 cut(s) 15
BseMII CTCAG 1 cut(s) 78
BseRI GAGGAG 1 cut(s) 317
BseXI GCAGC 1 cut(s) 218
BshFI GGCC 1 cut(s) 98
BsiHKAI GWGCWC 2 cut(s) 239, 309
BsiSI CCGG 1 cut(s) 69
BslFI GGGAC 1 cut(s) 95
BsmFI GGGAC 1 cut(s) 95
BsnI GGCC 1 cut(s) 98
Bsp1286I GDGCHC 2 cut(s) 239, 309
Bsp143I GATC 4 cut(s) 16, 47, 198, 224
BspANI GGCC 1 cut(s) 98
BspCNI CTCAG 1 cut(s) 79
BspLI GGNNCC 1 cut(s) 111
BspPI GGATC 1 cut(s) 232
BssMI GATC 4 cut(s) 16, 47, 198, 224
Bst2UI CCWGG 1 cut(s) 250
Bst4CI ACNGT 2 cut(s) 122, 173
Bst6I CTCTTC 1 cut(s) 189
BstAPI GCANNNNNTGC 1 cut(s) 186
BstDEI CTNAG 1 cut(s) 87
BstF5I GGATG 1 cut(s) 16
BstH2I RGCGCY 1 cut(s) 359
BstHHI GCGC 1 cut(s) 358
BstKTI GATC 4 cut(s) 19, 50, 201, 227
BstMBI GATC 4 cut(s) 16, 47, 198, 224
BstMWI GCNNNNNNNGC 3 cut(s) 186, 254, 355
BstNI CCWGG 1 cut(s) 250
BstSCI CCNGG 2 cut(s) 67, 248
BstV1I GCAGC 1 cut(s) 218
BsuRI GGCC 1 cut(s) 98
BtgZI GCGATG 1 cut(s) 297
BtsCI GGATG 1 cut(s) 16
BtsIMutI CAGTG 1 cut(s) 118
CaiI CAGNNNCTG 1 cut(s) 249
CfoI GCGC 1 cut(s) 358
Cfr13I GGNCC 1 cut(s) 109
Csp6I GTAC 1 cut(s) 65
CviAII CATG 2 cut(s) 73, 266
CviJI RGCY 6 cut(s) 98, 209, 237, 248, 307, 349
CviKI_1 RGCY 6 cut(s) 98, 209, 237, 248, 307, 349
CviQI GTAC 1 cut(s) 65
DdeI CTNAG 1 cut(s) 87
DpnI GATC 4 cut(s) 18, 49, 200, 226
DpnII GATC 4 cut(s) 16, 47, 198, 224
Eam1104I CTCTTC 1 cut(s) 189
EarI CTCTTC 1 cut(s) 189
Ecl136II GAGCTC 2 cut(s) 237, 307
Eco24I GRGCYC 2 cut(s) 239, 309
Eco47I GGWCC 1 cut(s) 109
Eco53kI GAGCTC 2 cut(s) 237, 307
EcoICRI GAGCTC 2 cut(s) 237, 307
EcoO109I RGGNCCY 1 cut(s) 109
EcoRII CCWGG 1 cut(s) 248
EcoT38I GRGCYC 2 cut(s) 239, 309
FaeI CATG 2 cut(s) 76, 269
FaiI YATR 8 cut(s) 74, 267, 327, 345, 363, 365, 367, 376
FalI AAGNNNNNCTT 2 cut(s) 194, 226
FaqI GGGAC 1 cut(s) 95
FatI CATG 2 cut(s) 72, 265
Fnu4HI GCNGC 1 cut(s) 207
FokI GGATG 1 cut(s) 23
FriOI GRGCYC 2 cut(s) 239, 309
Fsp4HI GCNGC 1 cut(s) 207
FspBI CTAG 1 cut(s) 332
GlaI GCGC 1 cut(s) 357
GluI GCNGC 1 cut(s) 207
GsuI CTGGAG 1 cut(s) 271
HaeII RGCGCY 1 cut(s) 359
HaeIII GGCC 1 cut(s) 98
HapII CCGG 1 cut(s) 69
HhaI GCGC 1 cut(s) 358
Hin1II CATG 2 cut(s) 76, 269
Hin6I GCGC 1 cut(s) 356
HinP1I GCGC 1 cut(s) 356
HinfI GANTC 1 cut(s) 272
HpaII CCGG 1 cut(s) 69
HphI GGTGA 1 cut(s) 185
Hpy188I TCNGA 3 cut(s) 31, 216, 224
Hpy99I CGWCG 1 cut(s) 314
HpyAV CCTTC 2 cut(s) 88, 100
HpyCH4III ACNGT 2 cut(s) 122, 173
HpyCH4IV ACGT 1 cut(s) 229
HpyCH4V TGCA 2 cut(s) 189, 269
HpyF10VI GCNNNNNNNGC 3 cut(s) 186, 254, 355
HpyF3I CTNAG 1 cut(s) 87
HpySE526I ACGT 1 cut(s) 229
Hsp92II CATG 2 cut(s) 76, 269
HspAI GCGC 1 cut(s) 356
Kzo9I GATC 4 cut(s) 16, 47, 198, 224
LmnI GCTCC 3 cut(s) 133, 234, 304
LpnPI CCDG 4 cut(s) 82, 99, 235, 262
Lsp1109I GCAGC 1 cut(s) 218
LweI GCATC 1 cut(s) 297
MaeI CTAG 1 cut(s) 332
MaeII ACGT 1 cut(s) 229
MaeIII GTNAC 1 cut(s) 173
MalI GATC 4 cut(s) 18, 49, 200, 226
MboI GATC 4 cut(s) 16, 47, 198, 224
MboII GAAGA 2 cut(s) 11, 206
MhlI GDGCHC 2 cut(s) 239, 309
MluCI AATT 1 cut(s) 114
MmeI TCCRAC 1 cut(s) 212
MnlI CCTC 1 cut(s) 295
MseI TTAA 1 cut(s) 102
MslI CAYNNNNRTG 2 cut(s) 364, 366
MspI CCGG 1 cut(s) 69
MspR9I CCNGG 2 cut(s) 69, 250
MvaI CCWGG 1 cut(s) 250
MwoI GCNNNNNNNGC 3 cut(s) 186, 254, 355
NciI CCSGG 1 cut(s) 69
NdeII GATC 4 cut(s) 16, 47, 198, 224
NlaIII CATG 2 cut(s) 76, 269
NlaIV GGNNCC 1 cut(s) 111
NmuCI GTSAC 1 cut(s) 173
PfeI GAWTC 1 cut(s) 272
PkrI GCNGC 1 cut(s) 208
PpuMI RGGWCCY 1 cut(s) 109
PsiI TTATAA 2 cut(s) 345, 376
Psp124BI GAGCTC 2 cut(s) 239, 309
Psp5II RGGWCCY 1 cut(s) 109
Psp6I CCWGG 1 cut(s) 248
PspGI CCWGG 1 cut(s) 248
PspN4I GGNNCC 1 cut(s) 111
PspPI GGNCC 1 cut(s) 109
PspPPI RGGWCCY 1 cut(s) 109
PstNI CAGNNNCTG 1 cut(s) 249
RsaI GTAC 1 cut(s) 66
RsaNI GTAC 1 cut(s) 65
RseI CAYNNNNRTG 2 cut(s) 364, 366
SacI GAGCTC 2 cut(s) 239, 309
SaqAI TTAA 1 cut(s) 102
SatI GCNGC 1 cut(s) 207
Sau3AI GATC 4 cut(s) 16, 47, 198, 224
Sau96I GGNCC 1 cut(s) 109
ScrFI CCNGG 2 cut(s) 69, 250
SduI GDGCHC 2 cut(s) 239, 309
SetI ASST 7 cut(s) 80, 111, 232, 239, 309, 318, 351
SfaNI GCATC 1 cut(s) 297
SinI GGWCC 1 cut(s) 109
SmiMI CAYNNNNRTG 2 cut(s) 364, 366
Sse9I AATT 1 cut(s) 114
SspMI CTAG 1 cut(s) 332
SstI GAGCTC 2 cut(s) 239, 309
StyD4I CCNGG 2 cut(s) 67, 248
TaaI ACNGT 2 cut(s) 122, 173
TaiI ACGT 1 cut(s) 232
TaqI TCGA 3 cut(s) 15, 42, 309
TasI AATT 1 cut(s) 114
TfiI GAWTC 1 cut(s) 272
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TscAI CASTG 1 cut(s) 125
TseFI GTSAC 1 cut(s) 173
TseI GCWGC 1 cut(s) 206
Tsp45I GTSAC 1 cut(s) 173
TspRI CASTG 1 cut(s) 125
VpaK11BI GGWCC 1 cut(s) 109
XspI CTAG 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.