pycom15g07870

calcium ion binding

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
4853711 .. 4854019
309 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g07870.1

Sequence Viewer

Length: 309 bp
ATGCCCAATATAATGCCCAATATAATCCACCAAAACGAGCGTGAGACTAAGTATAAGCGGTTCAAAATACCCTACACAAAGGAGCAGATATTGAAGATTTTCAAAAGATACGACAAGGACGGAGACGGCCAACTTTCCAAGGCCGAGCTCAAGGAAGCTTTCGCTGAACTCGGCGCGATATGCCCTGGCCTTAGAGCTTGGGATGGTCGTAGGCATGCTGATGACGACGGCGACGGCTTCATTTCTATAGACAAGGAGTTGGACAAGCTTGGCGACTATACCGTGGGCGTTGGGTATATCGTAAATTAG

Protein Analysis

103

Amino Acids

11.69

Weight (kDa)

6.1

Isoelectric Point (pI)

34.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_7 PF13499 27 - 56 4.1e-06 EF-hand domain pair
EF-hand_1 PF00036 30 - 56 8.9e-08 EF hand domain
EF-hand_6 PF13405 30 - 58 8.6e-08 EF-hand domain
EF-hand_5 PF13202 33 - 54 6.4e-06 EF hand
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000732)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g34500 FvH4_2g34510 FvH4_2g34530
prunus_persica Prupe.1G436400_v2.0.a1 Prupe.1G436500_v2.0.a1 Prupe.1G436600_v2.0.a1 Prupe.1G436700_v2.0.a1 Prupe.1G436800_v2.0.a1 Prupe.1G436900_v2.0.a1 Prupe.1G437000_v2.0.a1 Prupe.1G437100_v2.0.a1 Prupe.1G437200_v2.0.a1
pyrus_communis pycom08g08330 pycom08g08350 pycom08g08360 pycom08g08370 pycom08g08380 pycom15g07870 pycom15g07900
rosa_chinensis RchiOBHm_Chr3g0490571 RchiOBHm_Chr6g0278301 RchiOBHm_Chr6g0278331 RchiOBHm_Chr6g0307631 RchiOBHm_Chr6g0307841 RchiOBHm_Chr7g0227521
rosa_laevigata RLG00000001641 RLG00000006852 RLG00000010696 RLG00000010698 RLG00000010699 RLG00000010700 RLG00000013236
rosa_multiflora Rmu_co8134650.1_g000001 Rmu_sc0000031.1_g000033 Rmu_sc0000031.1_g000046 Rmu_sc0000791.1_g000066 Rmu_sc0001016.1_g000015 Rmu_sc0001016.1_g000032 Rmu_sc0001772.1_g000026 Rmu_sc0001772.1_g000027 Rmu_sc0001772.1_g000034 Rmu_sc0001772.1_g000067 Rmu_sc0003252.1_g000012 Rmu_sc0003862.1_g000006
rosa_roxburghii Rroxscaffold_1G00006670 Rroxscaffold_3G00232100 Rroxscaffold_5G00373780 Rroxscaffold_6G00393410 Rroxscaffold_7G00160830 Rroxscaffold_7G00160860 Rroxscaffold_7G00160880 Rroxscaffold_7G00190470
rosa_rugosa Rorug03G0243900 Rorug04G0257200 Rorug06G0116100 Rorug06G0361100 Rorug06G0361200 Rorug06G0361200 Rorug06G0361300
rosa_samantha Rh2AG314100 Rh4AG313500 Rh6BG229500 Rh6BG480600 Rh6BG480800 Rh6BG480900 Rh6BG481100 Rh7AG392700 Rh7AG394500 Rh7AG394600 Rh7AG394700 Rh7CG412100
rosa_wichuraiana Rw0G001040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 176
AciI CCGC 1 cut(s) 58
AcoI YGGCCR 1 cut(s) 127
AgsI TTSAA 3 cut(s) 64, 94, 103
AjnI CCWGG 1 cut(s) 184
AluBI AGCT 4 cut(s) 148, 158, 197, 268
AluI AGCT 4 cut(s) 148, 158, 197, 268
Alw21I GWGCWC 1 cut(s) 150
Alw26I GTCTC 2 cut(s) 38, 117
AoxI GGCC 3 cut(s) 127, 141, 187
Asp700I GAANNNNTTC 1 cut(s) 98
AspLEI GCGC 1 cut(s) 176
BanII GRGCYC 1 cut(s) 150
Bbv12I GWGCWC 1 cut(s) 150
BccI CCATC 1 cut(s) 197
BceAI ACGGC 3 cut(s) 142, 244, 250
BciT130I CCWGG 1 cut(s) 186
BcoDI GTCTC 2 cut(s) 38, 117
BfmI CTRYAG 1 cut(s) 246
Bme1390I CCNGG 1 cut(s) 186
BmrFI CCNGG 1 cut(s) 186
BpuEI CTTGAG 1 cut(s) 134
BsaJI CCNNGG 3 cut(s) 138, 184, 282
BseBI CCWGG 1 cut(s) 186
BseDI CCNNGG 3 cut(s) 138, 184, 282
BseGI GGATG 1 cut(s) 208
Bsh1236I CGCG 1 cut(s) 176
BshFI GGCC 3 cut(s) 129, 143, 189
BsiHKAI GWGCWC 1 cut(s) 150
BsmAI GTCTC 2 cut(s) 38, 117
BsmBI CGTCTC 1 cut(s) 117
BsnI GGCC 3 cut(s) 129, 143, 189
Bsp1286I GDGCHC 1 cut(s) 150
BspACI CCGC 1 cut(s) 58
BspANI GGCC 3 cut(s) 129, 143, 189
BspFNI CGCG 1 cut(s) 176
BssECI CCNNGG 3 cut(s) 138, 184, 282
BssT1I CCWWGG 1 cut(s) 138
Bst2UI CCWGG 1 cut(s) 186
Bst4CI ACNGT 1 cut(s) 283
BstC8I GCNNGC 1 cut(s) 216
BstDEI CTNAG 2 cut(s) 48, 191
BstDSI CCRYGG 1 cut(s) 282
BstF5I GGATG 1 cut(s) 208
BstFNI CGCG 1 cut(s) 176
BstHHI GCGC 1 cut(s) 176
BstMAI GTCTC 2 cut(s) 38, 117
BstMWI GCNNNNNNNGC 1 cut(s) 180
BstNI CCWGG 1 cut(s) 186
BstNSI RCATGY 1 cut(s) 218
BstSCI CCNGG 1 cut(s) 184
BstSFI CTRYAG 1 cut(s) 246
BstUI CGCG 1 cut(s) 176
BsuRI GGCC 3 cut(s) 129, 143, 189
BtgI CCRYGG 1 cut(s) 282
BtsCI GGATG 1 cut(s) 208
Cac8I GCNNGC 1 cut(s) 216
CfoI GCGC 1 cut(s) 176
CviAII CATG 1 cut(s) 215
CviJI RGCY 8 cut(s) 129, 143, 148, 158, 189, 197, 237, 268
CviKI_1 RGCY 8 cut(s) 129, 143, 148, 158, 189, 197, 237, 268
DdeI CTNAG 2 cut(s) 48, 191
EaeI YGGCCR 1 cut(s) 127
Ecl136II GAGCTC 1 cut(s) 148
Eco130I CCWWGG 1 cut(s) 138
Eco24I GRGCYC 1 cut(s) 150
Eco53kI GAGCTC 1 cut(s) 148
EcoICRI GAGCTC 1 cut(s) 148
EcoRII CCWGG 1 cut(s) 184
EcoT14I CCWWGG 1 cut(s) 138
EcoT38I GRGCYC 1 cut(s) 150
ErhI CCWWGG 1 cut(s) 138
Esp3I CGTCTC 1 cut(s) 117
FaeI CATG 1 cut(s) 218
FaiI YATR 8 cut(s) 11, 23, 54, 181, 216, 248, 279, 297
FatI CATG 1 cut(s) 214
FokI GGATG 1 cut(s) 215
FriOI GRGCYC 1 cut(s) 150
GlaI GCGC 1 cut(s) 175
HaeIII GGCC 3 cut(s) 129, 143, 189
HhaI GCGC 1 cut(s) 176
Hin1II CATG 1 cut(s) 218
Hin6I GCGC 1 cut(s) 174
HinP1I GCGC 1 cut(s) 174
HindIII AAGCTT 2 cut(s) 156, 266
Hpy99I CGWCG 2 cut(s) 230, 236
HpyCH4III ACNGT 1 cut(s) 283
HpyF10VI GCNNNNNNNGC 1 cut(s) 180
HpyF3I CTNAG 2 cut(s) 48, 191
Hsp92II CATG 1 cut(s) 218
HspAI GCGC 1 cut(s) 174
LmnI GCTCC 1 cut(s) 82
LpnPI CCDG 2 cut(s) 171, 198
MboII GAAGA 1 cut(s) 106
MhlI GDGCHC 1 cut(s) 150
MluCI AATT 1 cut(s) 304
MmeI TCCRAC 1 cut(s) 240
MroXI GAANNNNTTC 1 cut(s) 98
MslI CAYNNNNRTG 1 cut(s) 219
MspR9I CCNGG 1 cut(s) 186
MvaI CCWGG 1 cut(s) 186
MvnI CGCG 1 cut(s) 176
MwoI GCNNNNNNNGC 1 cut(s) 180
NlaIII CATG 1 cut(s) 218
NmeAIII GCCGAG 2 cut(s) 150, 169
NspI RCATGY 1 cut(s) 218
PaeI GCATGC 1 cut(s) 218
PdmI GAANNNNTTC 1 cut(s) 98
Psp124BI GAGCTC 1 cut(s) 150
Psp6I CCWGG 1 cut(s) 184
PspGI CCWGG 1 cut(s) 184
PsrI GAACNNNNNNTAC 2 cut(s) 44, 76
RseI CAYNNNNRTG 1 cut(s) 219
SacI GAGCTC 1 cut(s) 150
ScrFI CCNGG 1 cut(s) 186
SduI GDGCHC 1 cut(s) 150
SetI ASST 4 cut(s) 150, 160, 199, 270
SfcI CTRYAG 1 cut(s) 246
SmiMI CAYNNNNRTG 1 cut(s) 219
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
SphI GCATGC 1 cut(s) 218
Sse9I AATT 1 cut(s) 304
SsiI CCGC 1 cut(s) 58
SstI GAGCTC 1 cut(s) 150
StyD4I CCNGG 1 cut(s) 184
StyI CCWWGG 1 cut(s) 138
TaaI ACNGT 1 cut(s) 283
TasI AATT 1 cut(s) 304
TspDTI ATGAA 1 cut(s) 229
TspGWI ACGGA 1 cut(s) 135
XceI RCATGY 1 cut(s) 218
XmnI GAANNNNTTC 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.