pycom08g08370

calcium ion binding

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Forward (+)
6717940 .. 6718227
288 bp
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UTR
Exon/CDS
Intron
pycom08g08370.1

Sequence Viewer

Length: 288 bp
ATGGTCAGAGAGATCCATTTTCCGCCTAAAATTGTCGAAAAGAATGTCCAAATTCCGTGGACGAAGGAGCAGGTGATGGAAGTGTTCAAAAGTTTTGACAAGGATGAAGATGGCAGGCTTTCAAAGGAAGAGCTGAAGGCATCCTTCAAGAAGTTAGGCTCGCTTTGGAGCTCCTTCAGAGCTTGGAGAGCACTAGGGCATGCAGATGCCAACAAGGACGGCTTCATTTCTATGCAGGAGATCGGCGAACTTATCAGTTATGCCCTAAAACGTGGGTATAAAATGTAA

Protein Analysis

96

Amino Acids

11.08

Weight (kDa)

9.22

Isoelectric Point (pI)

29.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_7 PF13499 19 - 47 7.1e-06 EF-hand domain pair
EF-hand_7 PF13499 22 - 81 9.5e-08 EF-hand domain pair
EF-hand_6 PF13405 25 - 53 2.1e-07 EF-hand domain
EF-hand_1 PF00036 25 - 52 1.7e-06 EF hand domain
EF-hand_5 PF13202 27 - 49 3.2e-06 EF hand
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000732)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g34500 FvH4_2g34510 FvH4_2g34530
prunus_persica Prupe.1G436400_v2.0.a1 Prupe.1G436500_v2.0.a1 Prupe.1G436600_v2.0.a1 Prupe.1G436700_v2.0.a1 Prupe.1G436800_v2.0.a1 Prupe.1G436900_v2.0.a1 Prupe.1G437000_v2.0.a1 Prupe.1G437100_v2.0.a1 Prupe.1G437200_v2.0.a1
pyrus_communis pycom08g08330 pycom08g08350 pycom08g08360 pycom08g08370 pycom08g08380 pycom15g07870 pycom15g07900
rosa_chinensis RchiOBHm_Chr3g0490571 RchiOBHm_Chr6g0278301 RchiOBHm_Chr6g0278331 RchiOBHm_Chr6g0307631 RchiOBHm_Chr6g0307841 RchiOBHm_Chr7g0227521
rosa_laevigata RLG00000001641 RLG00000006852 RLG00000010696 RLG00000010698 RLG00000010699 RLG00000010700 RLG00000013236
rosa_multiflora Rmu_co8134650.1_g000001 Rmu_sc0000031.1_g000033 Rmu_sc0000031.1_g000046 Rmu_sc0000791.1_g000066 Rmu_sc0001016.1_g000015 Rmu_sc0001016.1_g000032 Rmu_sc0001772.1_g000026 Rmu_sc0001772.1_g000027 Rmu_sc0001772.1_g000034 Rmu_sc0001772.1_g000067 Rmu_sc0003252.1_g000012 Rmu_sc0003862.1_g000006
rosa_roxburghii Rroxscaffold_1G00006670 Rroxscaffold_3G00232100 Rroxscaffold_5G00373780 Rroxscaffold_6G00393410 Rroxscaffold_7G00160830 Rroxscaffold_7G00160860 Rroxscaffold_7G00160880 Rroxscaffold_7G00190470
rosa_rugosa Rorug03G0243900 Rorug04G0257200 Rorug06G0116100 Rorug06G0361100 Rorug06G0361200 Rorug06G0361200 Rorug06G0361300
rosa_samantha Rh2AG314100 Rh4AG313500 Rh6BG229500 Rh6BG480600 Rh6BG480800 Rh6BG480900 Rh6BG481100 Rh7AG392700 Rh7AG394500 Rh7AG394600 Rh7AG394700 Rh7CG412100
rosa_wichuraiana Rw0G001040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 61
Acc36I ACCTGC 1 cut(s) 61
AciI CCGC 1 cut(s) 23
AclWI GGATC 1 cut(s) 7
AcsI RAATTY 1 cut(s) 51
AcuI CTGAAG 2 cut(s) 155, 160
AgsI TTSAA 3 cut(s) 88, 123, 148
AluBI AGCT 3 cut(s) 133, 171, 182
AluI AGCT 3 cut(s) 133, 171, 182
Alw21I GWGCWC 2 cut(s) 173, 193
AlwI GGATC 1 cut(s) 7
ApoI RAATTY 1 cut(s) 51
ArsI GACNNNNNNTTYG 2 cut(s) 30, 62
AsuHPI GGTGA 1 cut(s) 85
BanII GRGCYC 1 cut(s) 173
Bbv12I GWGCWC 2 cut(s) 173, 193
BccI CCATC 2 cut(s) 70, 104
BceAI ACGGC 1 cut(s) 235
BfaI CTAG 1 cut(s) 194
BfuAI ACCTGC 1 cut(s) 61
BmsI GCATC 2 cut(s) 149, 196
BsaJI CCNNGG 1 cut(s) 56
BseDI CCNNGG 1 cut(s) 56
BseGI GGATG 2 cut(s) 109, 140
BsiHKAI GWGCWC 2 cut(s) 173, 193
Bsp1286I GDGCHC 2 cut(s) 173, 193
Bsp143I GATC 2 cut(s) 12, 240
BspACI CCGC 1 cut(s) 23
BspMI ACCTGC 1 cut(s) 61
BspPI GGATC 1 cut(s) 7
BspQI GCTCTTC 1 cut(s) 123
BssECI CCNNGG 1 cut(s) 56
BssMI GATC 2 cut(s) 12, 240
Bst6I CTCTTC 1 cut(s) 123
BstC8I GCNNGC 3 cut(s) 116, 161, 201
BstDSI CCRYGG 1 cut(s) 56
BstF5I GGATG 2 cut(s) 109, 140
BstKTI GATC 2 cut(s) 15, 243
BstMBI GATC 2 cut(s) 12, 240
BstMWI GCNNNNNNNGC 1 cut(s) 188
BstNSI RCATGY 1 cut(s) 203
BstX2I RGATCY 1 cut(s) 12
BstYI RGATCY 1 cut(s) 12
BtgI CCRYGG 1 cut(s) 56
BtsCI GGATG 2 cut(s) 109, 140
BveI ACCTGC 1 cut(s) 61
Cac8I GCNNGC 3 cut(s) 116, 161, 201
CspCI CAANNNNNGTGG 2 cut(s) 38, 73
CviAII CATG 1 cut(s) 200
CviJI RGCY 6 cut(s) 118, 133, 159, 171, 182, 222
CviKI_1 RGCY 6 cut(s) 118, 133, 159, 171, 182, 222
DpnI GATC 2 cut(s) 14, 242
DpnII GATC 2 cut(s) 12, 240
Eam1104I CTCTTC 1 cut(s) 123
EarI CTCTTC 1 cut(s) 123
EciI GGCGGA 1 cut(s) 12
Ecl136II GAGCTC 1 cut(s) 171
Eco24I GRGCYC 1 cut(s) 173
Eco53kI GAGCTC 1 cut(s) 171
Eco57I CTGAAG 2 cut(s) 155, 160
EcoICRI GAGCTC 1 cut(s) 171
EcoT38I GRGCYC 1 cut(s) 173
FaeI CATG 1 cut(s) 203
FaiI YATR 4 cut(s) 201, 233, 261, 279
FalI AAGNNNNNCTT 4 cut(s) 128, 160, 206, 238
FatI CATG 1 cut(s) 199
FokI GGATG 2 cut(s) 116, 127
FriOI GRGCYC 1 cut(s) 173
FspBI CTAG 1 cut(s) 194
Hin1II CATG 1 cut(s) 203
HphI GGTGA 1 cut(s) 85
Hpy166II GTNNAC 1 cut(s) 60
Hpy188I TCNGA 2 cut(s) 8, 179
Hpy188III TCNNGA 1 cut(s) 148
Hpy8I GTNNAC 1 cut(s) 60
HpyAV CCTTC 4 cut(s) 58, 130, 154, 184
HpyCH4IV ACGT 1 cut(s) 271
HpyCH4V TGCA 2 cut(s) 203, 235
HpyF10VI GCNNNNNNNGC 1 cut(s) 188
HpySE526I ACGT 1 cut(s) 271
Hsp92II CATG 1 cut(s) 203
Kzo9I GATC 2 cut(s) 12, 240
LguI GCTCTTC 1 cut(s) 123
LmnI GCTCC 3 cut(s) 67, 168, 176
LpnPI CCDG 3 cut(s) 56, 100, 221
LweI GCATC 2 cut(s) 149, 196
MaeI CTAG 1 cut(s) 194
MaeII ACGT 1 cut(s) 271
MalI GATC 2 cut(s) 14, 242
MboI GATC 2 cut(s) 12, 240
MboII GAAGA 2 cut(s) 119, 140
MflI RGATCY 1 cut(s) 12
MhlI GDGCHC 2 cut(s) 173, 193
MluCI AATT 2 cut(s) 30, 51
MslI CAYNNNNRTG 2 cut(s) 204, 230
MwoI GCNNNNNNNGC 1 cut(s) 188
NdeII GATC 2 cut(s) 12, 240
NlaIII CATG 1 cut(s) 203
NspI RCATGY 1 cut(s) 203
PaeI GCATGC 1 cut(s) 203
PaqCI CACCTGC 1 cut(s) 61
PciSI GCTCTTC 1 cut(s) 123
Psp124BI GAGCTC 1 cut(s) 173
PsuI RGATCY 1 cut(s) 12
RseI CAYNNNNRTG 2 cut(s) 204, 230
SacI GAGCTC 1 cut(s) 173
SapI GCTCTTC 1 cut(s) 123
Sau3AI GATC 2 cut(s) 12, 240
SduI GDGCHC 2 cut(s) 173, 193
SetI ASST 5 cut(s) 75, 135, 173, 184, 274
SfaNI GCATC 2 cut(s) 149, 196
SmiMI CAYNNNNRTG 2 cut(s) 204, 230
SphI GCATGC 1 cut(s) 203
Sse9I AATT 2 cut(s) 30, 51
SsiI CCGC 1 cut(s) 23
SspMI CTAG 1 cut(s) 194
SstI GAGCTC 1 cut(s) 173
TaiI ACGT 1 cut(s) 274
TaqI TCGA 1 cut(s) 36
TasI AATT 2 cut(s) 30, 51
TspDTI ATGAA 2 cut(s) 120, 214
TspGWI ACGGA 1 cut(s) 45
XapI RAATTY 1 cut(s) 51
XceI RCATGY 1 cut(s) 203
XspI CTAG 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.