Rmu_sc0000031.1_g000033

calcium ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000031.1
OG0000732
Physical Location & Seq
Reverse (-)
176482 .. 176769
288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000031.1_g000033.1.cds

Sequence Viewer

Length: 288 bp
atggggcggaaagaaaagacgaagcctgagattgtgcataagggtgttccgtacacgaggcagcagatcatagatattttcaaaggttatgacaagaacggagacggcaagctctcctgggatgaggtgaaggctgcgttcgctaaactcggggcgcttttgcccgactacagagcttggcgaggacgaaggtgtgccgatgccgacaaggatggcttcatctctctcgagaccgagctcaatgaacttgtcacctataccctggaactacagtatacaccgcagtaa

Protein Analysis

95

Amino Acids

10.91

Weight (kDa)

7.8

Isoelectric Point (pI)

17.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000732)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g34500 FvH4_2g34510 FvH4_2g34530
prunus_persica Prupe.1G436400_v2.0.a1 Prupe.1G436500_v2.0.a1 Prupe.1G436600_v2.0.a1 Prupe.1G436700_v2.0.a1 Prupe.1G436800_v2.0.a1 Prupe.1G436900_v2.0.a1 Prupe.1G437000_v2.0.a1 Prupe.1G437100_v2.0.a1 Prupe.1G437200_v2.0.a1
pyrus_communis pycom08g08330 pycom08g08350 pycom08g08360 pycom08g08370 pycom08g08380 pycom15g07870 pycom15g07900
rosa_chinensis RchiOBHm_Chr3g0490571 RchiOBHm_Chr6g0278301 RchiOBHm_Chr6g0278331 RchiOBHm_Chr6g0307631 RchiOBHm_Chr6g0307841 RchiOBHm_Chr7g0227521
rosa_laevigata RLG00000001641 RLG00000006852 RLG00000010696 RLG00000010698 RLG00000010699 RLG00000010700 RLG00000013236
rosa_multiflora Rmu_co8134650.1_g000001 Rmu_sc0000031.1_g000033 Rmu_sc0000031.1_g000046 Rmu_sc0000791.1_g000066 Rmu_sc0001016.1_g000015 Rmu_sc0001016.1_g000032 Rmu_sc0001772.1_g000026 Rmu_sc0001772.1_g000027 Rmu_sc0001772.1_g000034 Rmu_sc0001772.1_g000067 Rmu_sc0003252.1_g000012 Rmu_sc0003862.1_g000006
rosa_roxburghii Rroxscaffold_1G00006670 Rroxscaffold_3G00232100 Rroxscaffold_5G00373780 Rroxscaffold_6G00393410 Rroxscaffold_7G00160830 Rroxscaffold_7G00160860 Rroxscaffold_7G00160880 Rroxscaffold_7G00190470
rosa_rugosa Rorug03G0243900 Rorug04G0257200 Rorug06G0116100 Rorug06G0361100 Rorug06G0361200 Rorug06G0361200 Rorug06G0361300
rosa_samantha Rh2AG314100 Rh4AG313500 Rh6BG229500 Rh6BG480600 Rh6BG480800 Rh6BG480900 Rh6BG481100 Rh7AG392700 Rh7AG394500 Rh7AG394600 Rh7AG394700 Rh7CG412100
rosa_wichuraiana Rw0G001040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 275
AciI CCGC 2 cut(s) 7, 281
AfaI GTAC 1 cut(s) 53
AgsI TTSAA 1 cut(s) 82
AjnI CCWGG 2 cut(s) 116, 261
AluBI AGCT 3 cut(s) 112, 176, 238
AluI AGCT 3 cut(s) 112, 176, 238
Alw21I GWGCWC 1 cut(s) 240
Alw26I GTCTC 2 cut(s) 96, 224
Ama87I CYCGRG 2 cut(s) 149, 227
ApeKI GCWGC 2 cut(s) 61, 134
AspLEI GCGC 1 cut(s) 157
AsuHPI GGTGA 2 cut(s) 139, 244
AvaI CYCGRG 2 cut(s) 149, 227
BanII GRGCYC 1 cut(s) 240
BauI CACGAG 1 cut(s) 55
Bbv12I GWGCWC 1 cut(s) 240
BbvI GCAGC 2 cut(s) 73, 121
BccI CCATC 1 cut(s) 206
BceAI ACGGC 1 cut(s) 121
BciT130I CCWGG 2 cut(s) 118, 263
BcoDI GTCTC 2 cut(s) 96, 224
BfmI CTRYAG 2 cut(s) 169, 269
BfoI RGCGCY 1 cut(s) 158
BisI GCNGC 2 cut(s) 62, 135
BlsI GCNGC 2 cut(s) 63, 136
Bme1390I CCNGG 2 cut(s) 118, 263
BmeT110I CYCGRG 2 cut(s) 149, 227
BmrFI CCNGG 2 cut(s) 118, 263
BmsI GCATC 1 cut(s) 190
BsaI GGTCTC 1 cut(s) 224
BsaJI CCNNGG 2 cut(s) 117, 261
BseBI CCWGG 2 cut(s) 118, 263
BseDI CCNNGG 2 cut(s) 117, 261
BseGI GGATG 2 cut(s) 127, 217
BseMII CTCAG 1 cut(s) 18
BseXI GCAGC 2 cut(s) 73, 121
BsiHKAI GWGCWC 1 cut(s) 240
BsiHKCI CYCGRG 2 cut(s) 149, 227
BsmAI GTCTC 2 cut(s) 96, 224
BsmBI CGTCTC 1 cut(s) 96
Bso31I GGTCTC 1 cut(s) 224
BsoBI CYCGRG 2 cut(s) 149, 227
Bsp1286I GDGCHC 1 cut(s) 240
Bsp143I GATC 1 cut(s) 66
BspACI CCGC 2 cut(s) 7, 281
BspCNI CTCAG 1 cut(s) 19
BspTNI GGTCTC 1 cut(s) 224
BssECI CCNNGG 2 cut(s) 117, 261
BssMI GATC 1 cut(s) 66
BssNAI GTATAC 1 cut(s) 276
BssSI CACGAG 1 cut(s) 55
Bst1107I GTATAC 1 cut(s) 276
Bst2BI CACGAG 1 cut(s) 55
Bst2UI CCWGG 2 cut(s) 118, 263
Bst4CI ACNGT 1 cut(s) 273
BstC8I GCNNGC 1 cut(s) 110
BstDEI CTNAG 1 cut(s) 27
BstF5I GGATG 2 cut(s) 127, 217
BstH2I RGCGCY 1 cut(s) 158
BstHHI GCGC 1 cut(s) 157
BstKTI GATC 1 cut(s) 69
BstMAI GTCTC 2 cut(s) 96, 224
BstMBI GATC 1 cut(s) 66
BstMWI GCNNNNNNNGC 1 cut(s) 140
BstNI CCWGG 2 cut(s) 118, 263
BstSCI CCNGG 2 cut(s) 116, 261
BstSFI CTRYAG 2 cut(s) 169, 269
BstV1I GCAGC 2 cut(s) 73, 121
BstZ17I GTATAC 1 cut(s) 276
BtsCI GGATG 2 cut(s) 127, 217
Cac8I GCNNGC 1 cut(s) 110
CfoI GCGC 1 cut(s) 157
Csp6I GTAC 1 cut(s) 52
CviJI RGCY 6 cut(s) 25, 112, 134, 176, 216, 238
CviKI_1 RGCY 6 cut(s) 25, 112, 134, 176, 216, 238
CviQI GTAC 1 cut(s) 52
DdeI CTNAG 1 cut(s) 27
DpnI GATC 1 cut(s) 68
DpnII GATC 1 cut(s) 66
EciI GGCGGA 1 cut(s) 22
Ecl136II GAGCTC 1 cut(s) 238
Eco24I GRGCYC 1 cut(s) 240
Eco31I GGTCTC 1 cut(s) 224
Eco53kI GAGCTC 1 cut(s) 238
Eco88I CYCGRG 2 cut(s) 149, 227
EcoICRI GAGCTC 1 cut(s) 238
EcoRII CCWGG 2 cut(s) 116, 261
EcoT38I GRGCYC 1 cut(s) 240
Esp3I CGTCTC 1 cut(s) 96
FaiI YATR 5 cut(s) 39, 71, 90, 258, 276
FalI AAGNNNNNCTT 2 cut(s) 200, 232
FblI GTMKAC 1 cut(s) 275
Fnu4HI GCNGC 2 cut(s) 62, 135
FokI GGATG 2 cut(s) 134, 224
FriOI GRGCYC 1 cut(s) 240
Fsp4HI GCNGC 2 cut(s) 62, 135
GlaI GCGC 1 cut(s) 156
GluI GCNGC 2 cut(s) 62, 135
HaeII RGCGCY 1 cut(s) 158
HhaI GCGC 1 cut(s) 157
Hin6I GCGC 1 cut(s) 155
HinP1I GCGC 1 cut(s) 155
HphI GGTGA 2 cut(s) 139, 244
Hpy166II GTNNAC 2 cut(s) 54, 276
Hpy188III TCNNGA 2 cut(s) 227, 229
Hpy8I GTNNAC 2 cut(s) 54, 276
HpyAV CCTTC 2 cut(s) 124, 183
HpyCH4III ACNGT 1 cut(s) 273
HpyCH4V TGCA 1 cut(s) 37
HpyF10VI GCNNNNNNNGC 1 cut(s) 140
HpyF3I CTNAG 1 cut(s) 27
HspAI GCGC 1 cut(s) 155
Kzo9I GATC 1 cut(s) 66
LpnPI CCDG 5 cut(s) 39, 103, 130, 248, 275
Lsp1109I GCAGC 2 cut(s) 73, 121
LweI GCATC 1 cut(s) 190
MaeIII GTNAC 1 cut(s) 250
MalI GATC 1 cut(s) 68
MboI GATC 1 cut(s) 66
MhlI GDGCHC 1 cut(s) 240
MnlI CCTC 3 cut(s) 51, 118, 176
MslI CAYNNNNRTG 1 cut(s) 42
MspR9I CCNGG 2 cut(s) 118, 263
MvaI CCWGG 2 cut(s) 118, 263
MwoI GCNNNNNNNGC 1 cut(s) 140
NdeII GATC 1 cut(s) 66
NmuCI GTSAC 1 cut(s) 250
PaeR7I CTCGAG 1 cut(s) 227
PkrI GCNGC 2 cut(s) 63, 136
Psp124BI GAGCTC 1 cut(s) 240
Psp6I CCWGG 2 cut(s) 116, 261
PspGI CCWGG 2 cut(s) 116, 261
RsaI GTAC 1 cut(s) 53
RsaNI GTAC 1 cut(s) 52
RseI CAYNNNNRTG 1 cut(s) 42
SacI GAGCTC 1 cut(s) 240
SatI GCNGC 2 cut(s) 62, 135
Sau3AI GATC 1 cut(s) 66
ScrFI CCNGG 2 cut(s) 118, 263
SduI GDGCHC 1 cut(s) 240
SetI ASST 7 cut(s) 88, 114, 129, 178, 194, 240, 257
SfaNI GCATC 1 cut(s) 190
SfcI CTRYAG 2 cut(s) 169, 269
Sfr274I CTCGAG 1 cut(s) 227
SlaI CTCGAG 1 cut(s) 227
SmiMI CAYNNNNRTG 1 cut(s) 42
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
SsiI CCGC 2 cut(s) 7, 281
SstI GAGCTC 1 cut(s) 240
StyD4I CCNGG 2 cut(s) 116, 261
TaaI ACNGT 1 cut(s) 273
TaqI TCGA 1 cut(s) 228
TaqII GACCGA 1 cut(s) 248
TseFI GTSAC 1 cut(s) 250
TseI GCWGC 2 cut(s) 61, 134
Tsp45I GTSAC 1 cut(s) 250
TspDTI ATGAA 2 cut(s) 208, 258
TspGWI ACGGA 2 cut(s) 39, 114
XhoI CTCGAG 1 cut(s) 227
XmiI GTMKAC 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.