Prupe.1G436500_v2.0.a1

calcium ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000732
Physical Location & Seq
Forward (+)
37227209 .. 37227744
536 bp
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UTR
Exon/CDS
Intron
Prupe.1G436500.1

Sequence Viewer

Length: 288 bp
ATGGTTAGATACGTCCCTGCTTCTCCTCCTCCGGAGATGATGGTGAAGGAGGCCTATGTCGTATGGAGTAGGAAGCAGGTAGAGGATTTGTTGAAAAGTTTTGACATGGACAAAGACGGCAAGCTTTCCAAGCAGGAGTTGCAGGCAGCTCTCAATAAACTTGGGTCGCGTTGTGTCTTCTTAAGAGTTTTGAGAGCTCTACGCCATGCAGATTCCAACAAGGACGGGTTGATTTCTATAGACGATCACCTTGTTAACTATCTCTTTGAGTGCCGTTATAAGCTATAA

Protein Analysis

96

Amino Acids

11.03

Weight (kDa)

8.95

Isoelectric Point (pI)

51.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000732)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g34500 FvH4_2g34510 FvH4_2g34530
prunus_persica Prupe.1G436400_v2.0.a1 Prupe.1G436500_v2.0.a1 Prupe.1G436600_v2.0.a1 Prupe.1G436700_v2.0.a1 Prupe.1G436800_v2.0.a1 Prupe.1G436900_v2.0.a1 Prupe.1G437000_v2.0.a1 Prupe.1G437100_v2.0.a1 Prupe.1G437200_v2.0.a1
pyrus_communis pycom08g08330 pycom08g08350 pycom08g08360 pycom08g08370 pycom08g08380 pycom15g07870 pycom15g07900
rosa_chinensis RchiOBHm_Chr3g0490571 RchiOBHm_Chr6g0278301 RchiOBHm_Chr6g0278331 RchiOBHm_Chr6g0307631 RchiOBHm_Chr6g0307841 RchiOBHm_Chr7g0227521
rosa_laevigata RLG00000001641 RLG00000006852 RLG00000010696 RLG00000010698 RLG00000010699 RLG00000010700 RLG00000013236
rosa_multiflora Rmu_co8134650.1_g000001 Rmu_sc0000031.1_g000033 Rmu_sc0000031.1_g000046 Rmu_sc0000791.1_g000066 Rmu_sc0001016.1_g000015 Rmu_sc0001016.1_g000032 Rmu_sc0001772.1_g000026 Rmu_sc0001772.1_g000027 Rmu_sc0001772.1_g000034 Rmu_sc0001772.1_g000067 Rmu_sc0003252.1_g000012 Rmu_sc0003862.1_g000006
rosa_roxburghii Rroxscaffold_1G00006670 Rroxscaffold_3G00232100 Rroxscaffold_5G00373780 Rroxscaffold_6G00393410 Rroxscaffold_7G00160830 Rroxscaffold_7G00160860 Rroxscaffold_7G00160880 Rroxscaffold_7G00190470
rosa_rugosa Rorug03G0243900 Rorug04G0257200 Rorug06G0116100 Rorug06G0361100 Rorug06G0361200 Rorug06G0361200 Rorug06G0361300
rosa_samantha Rh2AG314100 Rh4AG313500 Rh6BG229500 Rh6BG480600 Rh6BG480800 Rh6BG480900 Rh6BG481100 Rh7AG392700 Rh7AG394500 Rh7AG394600 Rh7AG394700 Rh7CG412100
rosa_wichuraiana Rw0G001040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 279
Acc36I ACCTGC 1 cut(s) 67
AccII CGCG 1 cut(s) 169
AccIII TCCGGA 1 cut(s) 31
AflII CTTAAG 1 cut(s) 181
AgsI TTSAA 1 cut(s) 94
AluBI AGCT 4 cut(s) 124, 149, 197, 283
AluI AGCT 4 cut(s) 124, 149, 197, 283
Alw21I GWGCWC 1 cut(s) 199
Aor13HI TCCGGA 1 cut(s) 31
AoxI GGCC 1 cut(s) 51
ApeKI GCWGC 1 cut(s) 146
AsuHPI GGTGA 2 cut(s) 55, 239
BanII GRGCYC 1 cut(s) 199
BbsI GAAGAC 1 cut(s) 169
Bbv12I GWGCWC 1 cut(s) 199
BbvI GCAGC 1 cut(s) 158
BccI CCATC 1 cut(s) 34
BceAI ACGGC 2 cut(s) 133, 258
BfmI CTRYAG 1 cut(s) 237
BfrI CTTAAG 1 cut(s) 181
BfuAI ACCTGC 1 cut(s) 67
BisI GCNGC 1 cut(s) 147
BlsI GCNGC 1 cut(s) 148
BpiI GAAGAC 1 cut(s) 169
BsaWI WCCGGW 1 cut(s) 31
BseAI TCCGGA 1 cut(s) 31
BseRI GAGGAG 2 cut(s) 15, 18
BseXI GCAGC 1 cut(s) 158
Bsh1236I CGCG 1 cut(s) 169
BshFI GGCC 1 cut(s) 53
BsiHKAI GWGCWC 1 cut(s) 199
BsiSI CCGG 1 cut(s) 32
BsnI GGCC 1 cut(s) 53
Bsp1286I GDGCHC 1 cut(s) 199
Bsp13I TCCGGA 1 cut(s) 31
Bsp143I GATC 1 cut(s) 244
BspANI GGCC 1 cut(s) 53
BspEI TCCGGA 1 cut(s) 31
BspFNI CGCG 1 cut(s) 169
BspMI ACCTGC 1 cut(s) 67
BspTI CTTAAG 1 cut(s) 181
BssMI GATC 1 cut(s) 244
BstAFI CTTAAG 1 cut(s) 181
BstAPI GCANNNNNTGC 1 cut(s) 139
BstC8I GCNNGC 2 cut(s) 122, 144
BstFNI CGCG 1 cut(s) 169
BstKTI GATC 1 cut(s) 247
BstMBI GATC 1 cut(s) 244
BstMWI GCNNNNNNNGC 2 cut(s) 130, 139
BstSFI CTRYAG 1 cut(s) 237
BstUI CGCG 1 cut(s) 169
BstV1I GCAGC 1 cut(s) 158
BstV2I GAAGAC 1 cut(s) 169
BsuRI GGCC 1 cut(s) 53
BveI ACCTGC 1 cut(s) 67
Cac8I GCNNGC 2 cut(s) 122, 144
CviAII CATG 2 cut(s) 106, 206
CviJI RGCY 5 cut(s) 53, 124, 149, 197, 283
CviKI_1 RGCY 5 cut(s) 53, 124, 149, 197, 283
DpnI GATC 1 cut(s) 246
DpnII GATC 1 cut(s) 244
Ecl136II GAGCTC 1 cut(s) 197
Eco147I AGGCCT 1 cut(s) 53
Eco24I GRGCYC 1 cut(s) 199
Eco53kI GAGCTC 1 cut(s) 197
EcoICRI GAGCTC 1 cut(s) 197
EcoT38I GRGCYC 1 cut(s) 199
FaeI CATG 2 cut(s) 109, 209
FaiI YATR 7 cut(s) 57, 64, 107, 207, 239, 279, 286
FatI CATG 2 cut(s) 105, 205
Fnu4HI GCNGC 1 cut(s) 147
FriOI GRGCYC 1 cut(s) 199
Fsp4HI GCNGC 1 cut(s) 147
GluI GCNGC 1 cut(s) 147
HaeIII GGCC 1 cut(s) 53
HapII CCGG 1 cut(s) 32
Hin1II CATG 2 cut(s) 109, 209
HincII GTYRAC 1 cut(s) 256
HindII GTYRAC 1 cut(s) 256
HindIII AAGCTT 1 cut(s) 122
HinfI GANTC 1 cut(s) 212
HpaI GTTAAC 1 cut(s) 256
HpaII CCGG 1 cut(s) 32
HphI GGTGA 2 cut(s) 55, 239
Hpy166II GTNNAC 1 cut(s) 256
Hpy188III TCNNGA 1 cut(s) 32
Hpy8I GTNNAC 1 cut(s) 256
HpyAV CCTTC 1 cut(s) 40
HpyCH4IV ACGT 1 cut(s) 12
HpyCH4V TGCA 2 cut(s) 142, 209
HpyF10VI GCNNNNNNNGC 2 cut(s) 130, 139
HpySE526I ACGT 1 cut(s) 12
Hsp92II CATG 2 cut(s) 109, 209
Kpn2I TCCGGA 1 cut(s) 31
KspAI GTTAAC 1 cut(s) 256
Kzo9I GATC 1 cut(s) 244
LpnPI CCDG 5 cut(s) 30, 45, 62, 119, 128
Lsp1109I GCAGC 1 cut(s) 158
MaeII ACGT 1 cut(s) 12
MalI GATC 1 cut(s) 246
MboI GATC 1 cut(s) 244
MboII GAAGA 1 cut(s) 169
MhlI GDGCHC 1 cut(s) 199
MmeI TCCRAC 1 cut(s) 240
MnlI CCTC 4 cut(s) 36, 39, 43, 76
MroI TCCGGA 1 cut(s) 31
MseI TTAA 2 cut(s) 182, 255
MspCI CTTAAG 1 cut(s) 181
MspI CCGG 1 cut(s) 32
MvnI CGCG 1 cut(s) 169
MwoI GCNNNNNNNGC 2 cut(s) 130, 139
NdeII GATC 1 cut(s) 244
NlaIII CATG 2 cut(s) 109, 209
PceI AGGCCT 1 cut(s) 53
PfeI GAWTC 1 cut(s) 212
PkrI GCNGC 1 cut(s) 148
PsiI TTATAA 1 cut(s) 279
Psp124BI GAGCTC 1 cut(s) 199
SacI GAGCTC 1 cut(s) 199
SaqAI TTAA 2 cut(s) 182, 255
SatI GCNGC 1 cut(s) 147
Sau3AI GATC 1 cut(s) 244
SduI GDGCHC 1 cut(s) 199
SetI ASST 7 cut(s) 15, 81, 126, 151, 199, 252, 285
SfcI CTRYAG 1 cut(s) 237
SmlI CTYRAG 1 cut(s) 181
SmoI CTYRAG 1 cut(s) 181
SseBI AGGCCT 1 cut(s) 53
SstI GAGCTC 1 cut(s) 199
StuI AGGCCT 1 cut(s) 53
TaiI ACGT 1 cut(s) 15
TfiI GAWTC 1 cut(s) 212
Tru1I TTAA 2 cut(s) 182, 255
Tru9I TTAA 2 cut(s) 182, 255
TseI GCWGC 1 cut(s) 146
Vha464I CTTAAG 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.