Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0002968

Physical Location & Seq

Genomic Coordinates Forward (+)

24075943 .. 24078696

Gene Structure 2754 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g21460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2754 bp

ATGGGCTCAAAAGAATATAGATATTCCTGTGGACGGGCCTGGGTTGAGAGTGAGACAATAGCCCACCATCGATACGCCGTCGTCCCGCTCGTCCACGCCGCTTTTTCCTCCTCCCCCACAATGAACACCCAAACGAAAACCCCATTTCTACTCATTCATCTCAGATTGTTTCCATTCGTATTTTCTTCACATTTCAGAGCTTCTGCGGCAACTGCAATGCTCTGTGGTCGTAGCCGTTGCGTTAGAACTGTTGGAGCTCGCGTCGGACCTCATAACTCTACTACCGGAAAGGCGCTTGCCTGTGAGCCCACTAGCCATTTTTCTGGGCACCCATTGATCTTCGCCGAGCTCGCTGCATTTTTCTCATCGTTTTCCTCGAGAAACTCCGACCCAGGTTCTGATTTTAGCTCTGAATTCAAAGCTCGTTCTTTTGACATTGATGGTTTTGGAGATTCAAGTAATGGGTATGATAGAGCTAGGAAAATGGGTTCTGAAAATTTCGGGGATTTGAGTCTCTTAGGGAGTAGGAAGAATGATTGCGATAATGATCAGAGTAAAAAGTTTGGTATTTTTGATGACATTGAAGGGTCTGATGGTGGAGAAGAAGAGAATAGCGGTGACGAGGATAATGACGGTGGTGGTGGTGGTGGTGGTGATGGGGATTTAACGGTGTTGGATTCGTCGAATCGGGTTCACGAAAAAGGCGAAAACTTTGGGAGAGTTGATGGAGATGAAGAGGAATTCAGGCATCCATTGGTGAGAGAGGTTTGTAGGTTAATTGAGTTTAGGTCAGGTTGGAGCCCTAAGCTTGAAGGAGAATTAAAGAACTTGTTAAGAAGCTTGAAGCCGAGGCAAGTTTGCGCCGTGTTGAAGTCTCAGAGTGATGAGAGAGTTGCCTTGAAGTTTTTCTATTGGGCTGATAGGCAGTGGAGGTATAAGCATCACCCAGTTGTGTACTATGCAATGCTTGAGGTGTTAAGCAAGACTAAGTTGTGTCAAGGTGCTAAGAGGGTTCTCCGTCTTATGGCACGTAGAGGAATTGAGCGTAGCCCTGAAGCTTTTGGTTGTGTGATGGTGTCTTATAGCAGGGCGGGCAAGTTGAGGCATGCCCTGCGTGTGCTGACATTGATGCAGAAGGCCGGAGTTGAGCTTAATGTGTCAATGTGCAACACTGCAATTCATGTTTTGGTGACGGGGAATAAGTTGGAGAAGGCTTTGAGGGTGTTGGAAAGGATGCAACTTGTTGGAATTACACCAGATGTTGTCACTTATAATTGCTTGATAAAGGGGTATTGTGATGTGCATCGCATCCAGGATGCATTGGAGCTGATTGATGAAATGCCGAAAAGAGGGTGCGCCCCGGATAAAGTTAGTTACTATACTGTGATGGGTTTCCTCTGTAAGGAGAATAGGGTCGAAGAAGTGAGGGGATTGATGGAGAAGATGATTAAGGACAGTGGATTGTTACCGGACCAGGTCACTTATAATAATCTTGTCCATGTGCTTTCTAAGCACGGTTATGGAGATGAGGCTCTTGAGTTTTTAAGGGAAGCTGAAGAGAGGGGACTTCGGTTTGATAAGGTTGGGTATAGTGCAATTGTTCATTCATTCTGTAAGGACAGTAGGATTGATAAGGCAAAAGAAATTGTGAATGAAATGTTCTCAAAAGGTTGCACTCCAGATGTTGTAACATACACTGCTGTTCTTGATGGGTATTGCCGGCTTGGGAAGGTGGATCGAGCTAAAAAGATGCTTCAACACATGTACAAGCATGGTTGCAGGCCTAATACCGTATCATATACAGCCTTGTTAAATGGGCTTTGTCGTAGTCAAAACTCATTAGAGGCAAGAGAGATGATGAAAGTGAGCGAGGAACAATGGTGGACTCCGAATGCCATCACTTATAGTGTTGTGATGCATGGGTTCCGTAGGGAAGGGAAGTTAGTTGAGGCTTGTGATATCGTCAGAGAGATGGTTAATAAGGGTTTTTTCCCTAACCCAGTCGAAATTAATTTACTAATTCAGTCTCTTTGCCGAGAAGGGAAGATAACTGAGGCTAAACGTTTCATGGAGGAGTGTCTAAGTAAGGGATGTGCAATTAATGTTGTAAATTTTACAACTGTGATTCATGGATATTGTCAAAAGGATGACTTGGACGCTGCTTTGTCATTGCTTGATGACATGTATCTGAGCAACAAACACCCAGACACGGTCACTTATACAACAGTGATCCATGCGTTGGGAAAGAATGGTCGAATACAAGAGGCGACCGAACTTATGAAGAAGATGCTGGGAAAAGGGTTGGATCCGACTCCAGTAACATACAGGACAGTCATCCACTGGTATTGTCAAATGGGTAAGGTGGACGAGTTATTACAATTATTGGAGAAGATGTTCTTAAGACAAAATTGCAAAACAGCATACAATCAAGTGATTGAGAAGCTTTGTAGTTTTGGGAACCTTGAGGAGGCTGATAAACTATTAGGTAAGGTGTTGAGAACAGCTTCTAGAGTCGATGCTAAGACGTGCCATTCTCTTATGGGTGGTTATTTAAGAAATGGGGATCCTCTGTCAGCATACAAAGTGGCTTGTCGAATGTTCAACCGGAATCTTATTCCTGATTTAAAGTTATGTGAGAAGGTGACCAAGAGACTGATGTTAGATGGAAACTCCAAAGAGGCAGACAACCTAATGTTACGTTTTGTTGAGCGTGGATGCATATCAAACCAACATCAGGAACATTTGCAAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

918

Amino Acids

103.31

Weight (kDa)

8.44

Isoelectric Point (pI)

36.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	327 - 443	1.3e-10	Fungal tetratrico peptide repeats
PPR_long	PF17177	357 - 517	6.3e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	373 - 431	1.9e-12	Pentatricopeptide repeat domain
PPR_2	PF13041	385 - 433	5e-12	PPR repeat family
PPR_3	PF13812	416 - 466	6.5e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	416 - 447	3.1e-11	PPR repeat
PPR_2	PF13041	419 - 468	1.3e-16	PPR repeat family
PPR	PF01535	422 - 452	2.6e-07	PPR repeat
PPR_2	PF13041	454 - 496	2.7e-06	PPR repeat family
PPR_2	PF13041	490 - 539	1e-08	PPR repeat family
PPR_long	PF17177	494 - 643	1.2e-09	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	515 - 566	8.6e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	521 - 553	1.7e-06	PPR repeat
PPR_2	PF13041	527 - 574	1.6e-13	PPR repeat family
PPR_3	PF13812	549 - 605	9.9e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	556 - 588	2.5e-12	PPR repeat
PPR_2	PF13041	560 - 609	3.7e-18	PPR repeat family
PPR	PF01535	563 - 593	4.2e-07	PPR repeat
PPR_2	PF13041	630 - 666	8e-06	PPR repeat family
PPR_long	PF17177	683 - 799	9e-07	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	696 - 728	1.2e-08	PPR repeat
PPR_2	PF13041	701 - 747	1.4e-12	PPR repeat family
PPR_3	PF13812	723 - 782	1.8e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	734 - 763	4.6e-09	PPR repeat
PPR_2	PF13041	735 - 780	2.6e-12	PPR repeat family
PPR	PF01535	738 - 768	1.3e-07	PPR repeat
PPR_1	PF12854	766 - 798	2.5e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30290 AT1G30290
fragaria_vesca	FvH4_3g05050 FvH4_3g05050 FvH4_3g05050 FvH4_3g05050 FvH4_3g05050 FvH4_3g05050 FvH4_3g05050 FvH4_3g05050
malus_domestica	MD10G1258300.v1.1
prunus_persica	Prupe.4G085500_v2.0.a1 Prupe.4G085500_v2.0.a1
pyrus_communis	pycom05g26000 pycom10g21460
rosa_chinensis	RchiOBHm_Chr3g0490541 RchiOBHm_Chr3g0490551 RchiOBHm_Chr5g0014911
rosa_laevigata	RLG00000022885 RLG00000032150
rosa_multiflora	Rmu_sc0003862.1_g000007 Rmu_sc0013610.1_g000002
rosa_roxburghii	Rroxscaffold_1G00061660 Rroxscaffold_6G00393420
rosa_rugosa	Rorug03G0243900 Rorug05G0021400
rosa_samantha	Rh3AG293300 Rh3AG293400 Rh3BG329800 Rh3CG327300 Rh3CG327400 Rh3DG326700 Rh5AG117100 Rh5BG114100 Rh5CG125600 Rh5DG113500
rosa_wichuraiana	Rw3G025970 Rw5G010080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1272, 1485
AccB1I	GGYRCC	1 cut(s)	327
AccB7I	CCANNNNNTGG	1 cut(s)	2239
AccBSI	CCGCTC	1 cut(s)	88
AccII	CGCG	1 cut(s)	261
AciI	CCGC	5 cut(s)	86, 99, 206, 615, 1091
AclI	AACGTT	1 cut(s)	2062
AclWI	GGATC	6 cut(s)	1743, 2224, 2300, 2313, 2558, 2571
AcsI	RAATTY	4 cut(s)	413, 496, 740, 2110
AcuI	CTGAAG	2 cut(s)	1074, 1575
AfaI	GTAC	2 cut(s)	956, 1766
AfiI	CCNNNNNNNGG	8 cut(s)	33, 1024, 1349, 1402, 2209, 2239, 2467, 2734
AflII	CTTAAG	1 cut(s)	2398
AflIII	ACRYGT	2 cut(s)	1761, 2181
AgsI	TTSAA	9 cut(s)	418, 456, 584, 812, 844, 871, 901, 1757, 2602
AjiI	CACGTC	1 cut(s)	2526
AjnI	CCWGG	4 cut(s)	38, 391, 1311, 1473
AloI	GAACNNNNNNTCC	4 cut(s)	472, 504, 2378, 2410
Alw21I	GWGCWC	2 cut(s)	259, 351
Alw26I	GTCTC	5 cut(s)	47, 518, 879, 2031, 2644
AlwI	GGATC	6 cut(s)	1743, 2224, 2300, 2313, 2558, 2571
AlwNI	CAGNNNCTG	1 cut(s)	398
Ama87I	CYCGRG	1 cut(s)	376
AoxI	GGCC	3 cut(s)	36, 1137, 1781
ApeKI	GCWGC	2 cut(s)	353, 2159
ApoI	RAATTY	4 cut(s)	413, 496, 740, 2110
AseI	ATTAAT	2 cut(s)	2010, 2100
Asp700I	GAANNNNTTC	3 cut(s)	905, 2393, 2503
AspLEI	GCGC	3 cut(s)	295, 863, 1358
AspS9I	GGNCC	3 cut(s)	36, 266, 1471
AsuC2I	CCSGG	1 cut(s)	1361
AsuHPI	GGTGA	6 cut(s)	629, 665, 769, 935, 1201, 2653
AvaI	CYCGRG	1 cut(s)	376
AvaII	GGWCC	2 cut(s)	266, 1471
BaeGI	GKGCMC	1 cut(s)	330
BamHI	GGATCC	2 cut(s)	2305, 2563
BanI	GGYRCC	1 cut(s)	327
BanII	GRGCYC	5 cut(s)	8, 259, 309, 351, 803
Bbv12I	GWGCWC	2 cut(s)	259, 351
BbvI	GCAGC	2 cut(s)	340, 2146
BceAI	ACGGC	3 cut(s)	62, 219, 848
BcgI	CGANNNNNNTGC	2 cut(s)	335, 369
BciT130I	CCWGG	4 cut(s)	40, 393, 1313, 1475
BclI	TGATCA	1 cut(s)	547
BcnI	CCSGG	1 cut(s)	1361
BcoDI	GTCTC	5 cut(s)	47, 518, 879, 2031, 2644
BfaI	CTAG	3 cut(s)	312, 477, 2508
BfoI	RGCGCY	1 cut(s)	296
BfrI	CTTAAG	1 cut(s)	2398
BisI	GCNGC	4 cut(s)	99, 207, 354, 2160
BlsI	GCNGC	4 cut(s)	100, 208, 355, 2161
Bme1390I	CCNGG	5 cut(s)	40, 393, 1313, 1361, 1475
Bme18I	GGWCC	2 cut(s)	266, 1471
BmeT110I	CYCGRG	1 cut(s)	376
BmgBI	CACGTC	1 cut(s)	2526
BmgT120I	GGNCC	3 cut(s)	36, 266, 1471
BmiI	GGNNCC	6 cut(s)	329, 800, 1925, 2307, 2459, 2565
BmrFI	CCNGG	5 cut(s)	40, 393, 1313, 1361, 1475
BmrI	ACTGGG	2 cut(s)	941, 1994
BmuI	ACTGGG	2 cut(s)	941, 1994
BpmI	CTGGAG	2 cut(s)	1662, 2298
Bpu10I	CCTNAGC	1 cut(s)	804
BpuEI	CTTGAG	3 cut(s)	989, 1556, 2483
BpuMI	CCSGG	1 cut(s)	1361
Bsa29I	ATCGAT	1 cut(s)	70
BsaAI	YACGTR	1 cut(s)	1031
BsaBI	GATNNNNATC	3 cut(s)	546, 1302, 2719
BsaJI	CCNNGG	4 cut(s)	39, 391, 848, 1359
BsaWI	WCCGGW	3 cut(s)	284, 1468, 2604
BsaXI	ACNNNNNCTCC	4 cut(s)	246, 276, 2378, 2408
Bsc4I	CCNNNNNNNGG	8 cut(s)	33, 1024, 1349, 1402, 2209, 2239, 2467, 2734
Bse118I	RCCGGY	1 cut(s)	1719
Bse1I	ACTGG	4 cut(s)	947, 2000, 2315, 2345
Bse3DI	GCAATG	3 cut(s)	222, 969, 2168
Bse8I	GATNNNNATC	3 cut(s)	546, 1302, 2719
BseBI	CCWGG	4 cut(s)	40, 393, 1313, 1475
BseCI	ATCGAT	1 cut(s)	70
BseDI	CCNNGG	4 cut(s)	39, 391, 848, 1359
BseGI	GGATG	8 cut(s)	748, 1239, 1308, 1321, 2096, 2152, 2334, 2720
BseJI	GATNNNNATC	3 cut(s)	546, 1302, 2719
BseLI	CCNNNNNNNGG	8 cut(s)	33, 1024, 1349, 1402, 2209, 2239, 2467, 2734
BseMI	GCAATG	3 cut(s)	222, 969, 2168
BseMII	CTCAG	4 cut(s)	175, 890, 2043, 2180
BseNI	ACTGG	4 cut(s)	947, 2000, 2315, 2345
BseRI	GAGGAG	3 cut(s)	100, 2087, 2480
BseSI	GKGCMC	1 cut(s)	330
BseXI	GCAGC	2 cut(s)	340, 2146
BseYI	CCCAGC	1 cut(s)	2290
Bsh1236I	CGCG	1 cut(s)	261
Bsh1285I	CGRYCG	1 cut(s)	2271
BshFI	GGCC	3 cut(s)	38, 1139, 1783
BshNI	GGYRCC	1 cut(s)	327
BshVI	ATCGAT	1 cut(s)	70
BsiEI	CGRYCG	1 cut(s)	2271
BsiHKAI	GWGCWC	2 cut(s)	259, 351
BsiHKCI	CYCGRG	1 cut(s)	376
BsiSI	CCGG	6 cut(s)	285, 1140, 1361, 1469, 1720, 2605
BslFI	GGGAC	2 cut(s)	68, 1578
BslI	CCNNNNNNNGG	8 cut(s)	33, 1024, 1349, 1402, 2209, 2239, 2467, 2734
BsmAI	GTCTC	5 cut(s)	47, 518, 879, 2031, 2644
BsmFI	GGGAC	2 cut(s)	68, 1578
BsmI	GAATGC	1 cut(s)	1897
BsnI	GGCC	3 cut(s)	38, 1139, 1783
BsoBI	CYCGRG	1 cut(s)	376
Bsp1286I	GDGCHC	6 cut(s)	8, 259, 309, 330, 351, 803
Bsp1407I	TGTACA	1 cut(s)	1764
Bsp143I	GATC	6 cut(s)	336, 547, 1735, 2229, 2305, 2563
BspACI	CCGC	5 cut(s)	86, 99, 206, 615, 1091
BspANI	GGCC	3 cut(s)	38, 1139, 1783
BspCNI	CTCAG	4 cut(s)	174, 889, 2044, 2181
BspDI	ATCGAT	1 cut(s)	70
BspFNI	CGCG	1 cut(s)	261
BspLI	GGNNCC	6 cut(s)	329, 800, 1925, 2307, 2459, 2565
BspPI	GGATC	6 cut(s)	1743, 2224, 2300, 2313, 2558, 2571
BspT107I	GGYRCC	1 cut(s)	327
BspTI	CTTAAG	1 cut(s)	2398
BsrBI	CCGCTC	1 cut(s)	88
BsrDI	GCAATG	3 cut(s)	222, 969, 2168
BsrFI	RCCGGY	1 cut(s)	1719
BsrGI	TGTACA	1 cut(s)	1764
BsrI	ACTGG	4 cut(s)	947, 2000, 2315, 2345
BssAI	RCCGGY	1 cut(s)	1719
BssECI	CCNNGG	4 cut(s)	39, 391, 848, 1359
BssMI	GATC	6 cut(s)	336, 547, 1735, 2229, 2305, 2563
Bst2UI	CCWGG	4 cut(s)	40, 393, 1313, 1475
Bst6I	CTCTTC	3 cut(s)	600, 729, 1551
BstAFI	CTTAAG	1 cut(s)	2398
BstAPI	GCANNNNNTGC	1 cut(s)	1111
BstAUI	TGTACA	1 cut(s)	1764
BstBAI	YACGTR	1 cut(s)	1031
BstC8I	GCNNGC	7 cut(s)	259, 297, 351, 1093, 1107, 1721, 1781
BstEII	GGTNACC	1 cut(s)	2641
BstENI	CCTNNNNNAGG	2 cut(s)	1400, 2465
BstF5I	GGATG	8 cut(s)	748, 1239, 1308, 1321, 2096, 2152, 2334, 2720
BstFNI	CGCG	1 cut(s)	261
BstH2I	RGCGCY	1 cut(s)	296
BstHHI	GCGC	3 cut(s)	295, 863, 1358
BstKTI	GATC	6 cut(s)	339, 550, 1738, 2232, 2308, 2566
BstMAI	GTCTC	5 cut(s)	47, 518, 879, 2031, 2644
BstMBI	GATC	6 cut(s)	336, 547, 1735, 2229, 2305, 2563
BstMCI	CGRYCG	1 cut(s)	2271
BstMWI	GCNNNNNNNGC	6 cut(s)	206, 212, 350, 1092, 1111, 1510
BstNI	CCWGG	4 cut(s)	40, 393, 1313, 1475
BstNSI	RCATGY	3 cut(s)	1109, 1765, 2185
BstPI	GGTNACC	1 cut(s)	2641
BstSCI	CCNGG	5 cut(s)	38, 391, 1311, 1359, 1473
BstSLI	GKGCMC	1 cut(s)	330
BstUI	CGCG	1 cut(s)	261
BstV1I	GCAGC	2 cut(s)	340, 2146
BstX2I	RGATCY	2 cut(s)	2305, 2563
BstXI	CCANNNNNNTGG	1 cut(s)	323
BstYI	RGATCY	2 cut(s)	2305, 2563
Bsu15I	ATCGAT	1 cut(s)	70
BsuRI	GGCC	3 cut(s)	38, 1139, 1783
BsuTUI	ATCGAT	1 cut(s)	70
BtgZI	GCGATG	1 cut(s)	1289
BtrI	CACGTC	1 cut(s)	2526
BtsCI	GGATG	8 cut(s)	748, 1239, 1308, 1321, 2096, 2152, 2334, 2720
BtsI	GCAGTG	3 cut(s)	932, 1170, 1695
BtsIMutI	CAGTG	6 cut(s)	932, 1170, 1462, 1695, 2232, 2338
Cac8I	GCNNGC	7 cut(s)	259, 297, 351, 1093, 1107, 1721, 1781
CaiI	CAGNNNCTG	1 cut(s)	398
CfoI	GCGC	3 cut(s)	295, 863, 1358
Cfr10I	RCCGGY	1 cut(s)	1719
Cfr13I	GGNCC	3 cut(s)	36, 266, 1471
ClaI	ATCGAT	1 cut(s)	70
CseI	GACGC	2 cut(s)	250, 2165
CsiI	ACCWGGT	1 cut(s)	1473
Csp6I	GTAC	2 cut(s)	955, 1765
CspCI	CAANNNNNGTGG	2 cut(s)	2327, 2362
CviQI	GTAC	2 cut(s)	955, 1765
DpnI	GATC	6 cut(s)	338, 549, 1737, 2231, 2307, 2565
DpnII	GATC	6 cut(s)	336, 547, 1735, 2229, 2305, 2563
DraI	TTTAAA	1 cut(s)	2625
Eam1104I	CTCTTC	3 cut(s)	600, 729, 1551
EarI	CTCTTC	3 cut(s)	600, 729, 1551
Ecl136II	GAGCTC	2 cut(s)	257, 349
Eco147I	AGGCCT	1 cut(s)	1783
Eco24I	GRGCYC	5 cut(s)	8, 259, 309, 351, 803
Eco32I	GATATC	1 cut(s)	1960
Eco47I	GGWCC	2 cut(s)	266, 1471
Eco53kI	GAGCTC	2 cut(s)	257, 349
Eco57I	CTGAAG	2 cut(s)	1074, 1575
Eco88I	CYCGRG	1 cut(s)	376
Eco91I	GGTNACC	1 cut(s)	2641
EcoICRI	GAGCTC	2 cut(s)	257, 349
EcoNI	CCTNNNNNAGG	2 cut(s)	1400, 2465
EcoO65I	GGTNACC	1 cut(s)	2641
EcoRI	GAATTC	2 cut(s)	413, 740
EcoRII	CCWGG	4 cut(s)	38, 391, 1311, 1473
EcoRV	GATATC	1 cut(s)	1960
EcoT22I	ATGCAT	3 cut(s)	1321, 1920, 2720
EcoT38I	GRGCYC	5 cut(s)	8, 259, 309, 351, 803
FalI	AAGNNNNNCTT	4 cut(s)	2135, 2167, 2381, 2413
FaqI	GGGAC	2 cut(s)	68, 1578
FauI	CCCGC	2 cut(s)	93, 1084
FbaI	TGATCA	1 cut(s)	547
Fnu4HI	GCNGC	4 cut(s)	99, 207, 354, 2160
FokI	GGATG	8 cut(s)	735, 1246, 1295, 1328, 2103, 2159, 2321, 2727
FriOI	GRGCYC	5 cut(s)	8, 259, 309, 351, 803
Fsp4HI	GCNGC	4 cut(s)	99, 207, 354, 2160
FspBI	CTAG	3 cut(s)	312, 477, 2508
GlaI	GCGC	3 cut(s)	294, 862, 1357
GluI	GCNGC	4 cut(s)	99, 207, 354, 2160
GsaI	CCCAGC	1 cut(s)	2294
GsuI	CTGGAG	2 cut(s)	1662, 2298
HaeII	RGCGCY	1 cut(s)	296
HaeIII	GGCC	3 cut(s)	38, 1139, 1783
HapII	CCGG	6 cut(s)	285, 1140, 1361, 1469, 1720, 2605
HgaI	GACGC	2 cut(s)	250, 2165
HhaI	GCGC	3 cut(s)	295, 863, 1358
Hin6I	GCGC	3 cut(s)	293, 861, 1356
HinP1I	GCGC	3 cut(s)	293, 861, 1356
HindIII	AAGCTT	4 cut(s)	806, 838, 1056, 2441
HinfI	GANTC	9 cut(s)	452, 511, 677, 685, 1885, 2125, 2311, 2511, 2608
HpaII	CCGG	6 cut(s)	285, 1140, 1361, 1469, 1720, 2605
HphI	GGTGA	6 cut(s)	629, 665, 769, 935, 1201, 2653
Hpy166II	GTNNAC	6 cut(s)	32, 94, 694, 955, 1884, 2365
Hpy188III	TCNNGA	8 cut(s)	378, 695, 1535, 1679, 1706, 2508, 2618, 2735
Hpy8I	GTNNAC	6 cut(s)	32, 94, 694, 955, 1884, 2365
Hpy99I	CGWCG	3 cut(s)	83, 266, 685
HpyAV	CCTTC	8 cut(s)	578, 806, 1129, 1204, 1723, 1928, 2033, 2632
HpyCH4IV	ACGT	4 cut(s)	1030, 2062, 2525, 2698
HpyF10VI	GCNNNNNNNGC	6 cut(s)	206, 212, 350, 1092, 1111, 1510
HpySE526I	ACGT	4 cut(s)	1030, 2062, 2525, 2698
HspAI	GCGC	3 cut(s)	293, 861, 1356
KroI	GCCGGC	1 cut(s)	1719
KroNI	GCCGGC	1 cut(s)	1721
Ksp22I	TGATCA	1 cut(s)	547
Kzo9I	GATC	6 cut(s)	336, 547, 1735, 2229, 2305, 2563
LmnI	GCTCC	3 cut(s)	254, 798, 1324
Lsp1109I	GCAGC	2 cut(s)	340, 2146
MabI	ACCWGGT	1 cut(s)	1473
MaeI	CTAG	3 cut(s)	312, 477, 2508
MaeII	ACGT	4 cut(s)	1030, 2062, 2525, 2698
MalI	GATC	6 cut(s)	338, 549, 1737, 2231, 2307, 2565
MbiI	CCGCTC	1 cut(s)	88
MboI	GATC	6 cut(s)	336, 547, 1735, 2229, 2305, 2563
MfeI	CAATTG	1 cut(s)	1596
MflI	RGATCY	2 cut(s)	2305, 2563
MhlI	GDGCHC	6 cut(s)	8, 259, 309, 330, 351, 803
MlyI	GAGTC	4 cut(s)	520, 1879, 2305, 2520
Mph1103I	ATGCAT	3 cut(s)	1321, 1920, 2720
MroNI	GCCGGC	1 cut(s)	1719
MroXI	GAANNNNTTC	3 cut(s)	905, 2393, 2503
MslI	CAYNNNNRTG	1 cut(s)	1518
MspCI	CTTAAG	1 cut(s)	2398
MspI	CCGG	6 cut(s)	285, 1140, 1361, 1469, 1720, 2605
MspR9I	CCNGG	5 cut(s)	40, 393, 1313, 1361, 1475
MunI	CAATTG	1 cut(s)	1596
Mva1269I	GAATGC	1 cut(s)	1897
MvaI	CCWGG	4 cut(s)	40, 393, 1313, 1475
MvnI	CGCG	1 cut(s)	261
MwoI	GCNNNNNNNGC	6 cut(s)	206, 212, 350, 1092, 1111, 1510
NaeI	GCCGGC	1 cut(s)	1721
NciI	CCSGG	1 cut(s)	1361
NdeII	GATC	6 cut(s)	336, 547, 1735, 2229, 2305, 2563
NgoMIV	GCCGGC	1 cut(s)	1719
NlaIV	GGNNCC	6 cut(s)	329, 800, 1925, 2307, 2459, 2565
NmeAIII	GCCGAG	3 cut(s)	370, 873, 2060
NmuCI	GTSAC	6 cut(s)	617, 1189, 1264, 1477, 2212, 2641
NsiI	ATGCAT	3 cut(s)	1321, 1920, 2720
NspI	RCATGY	3 cut(s)	1109, 1765, 2185
PaeI	GCATGC	1 cut(s)	1109
PaeR7I	CTCGAG	1 cut(s)	376
PceI	AGGCCT	1 cut(s)	1783
PciI	ACATGT	2 cut(s)	1761, 2181
PcsI	WCGNNNNNNNCGW	3 cut(s)	87, 374, 702
PctI	GAATGC	1 cut(s)	1897
PdiI	GCCGGC	1 cut(s)	1721
PdmI	GAANNNNTTC	3 cut(s)	905, 2393, 2503
PfeI	GAWTC	5 cut(s)	452, 677, 685, 2125, 2608
PflFI	GACNNNGTC	2 cut(s)	1475, 2210
PflMI	CCANNNNNTGG	1 cut(s)	2239
PfoI	TCCNGGA	1 cut(s)	1311
PkrI	GCNGC	4 cut(s)	100, 208, 355, 2161
PleI	GAGTC	4 cut(s)	519, 1879, 2305, 2519
PpsI	GAGTC	4 cut(s)	519, 1879, 2305, 2519
Ppu21I	YACGTR	1 cut(s)	1031
PscI	ACATGT	2 cut(s)	1761, 2181
PshBI	ATTAAT	2 cut(s)	2010, 2100
PsiI	TTATAA	2 cut(s)	1272, 1485
Psp124BI	GAGCTC	2 cut(s)	259, 351
Psp1406I	AACGTT	1 cut(s)	2062
Psp6I	CCWGG	4 cut(s)	38, 391, 1311, 1473
PspEI	GGTNACC	1 cut(s)	2641
PspFI	CCCAGC	1 cut(s)	2290
PspGI	CCWGG	4 cut(s)	38, 391, 1311, 1473
PspN4I	GGNNCC	6 cut(s)	329, 800, 1925, 2307, 2459, 2565
PspPI	GGNCC	3 cut(s)	36, 266, 1471
PstNI	CAGNNNCTG	1 cut(s)	398
PsuI	RGATCY	2 cut(s)	2305, 2563
PsyI	GACNNNGTC	2 cut(s)	1475, 2210
RsaI	GTAC	2 cut(s)	956, 1766
RsaNI	GTAC	2 cut(s)	955, 1765
RseI	CAYNNNNRTG	1 cut(s)	1518
SacI	GAGCTC	2 cut(s)	259, 351
SatI	GCNGC	4 cut(s)	99, 207, 354, 2160
Sau3AI	GATC	6 cut(s)	336, 547, 1735, 2229, 2305, 2563
Sau96I	GGNCC	3 cut(s)	36, 266, 1471
SchI	GAGTC	4 cut(s)	520, 1879, 2305, 2520
ScrFI	CCNGG	5 cut(s)	40, 393, 1313, 1361, 1475
SduI	GDGCHC	6 cut(s)	8, 259, 309, 330, 351, 803
SexAI	ACCWGGT	1 cut(s)	1473
Sfr274I	CTCGAG	1 cut(s)	376
SinI	GGWCC	2 cut(s)	266, 1471
SlaI	CTCGAG	1 cut(s)	376
SmiMI	CAYNNNNRTG	1 cut(s)	1518
SmlI	CTYRAG	5 cut(s)	376, 968, 1535, 2398, 2462
SmoI	CTYRAG	5 cut(s)	376, 968, 1535, 2398, 2462
SphI	GCATGC	1 cut(s)	1109
SseBI	AGGCCT	1 cut(s)	1783
SsiI	CCGC	5 cut(s)	86, 99, 206, 615, 1091
SspMI	CTAG	3 cut(s)	312, 477, 2508
SstI	GAGCTC	2 cut(s)	259, 351
StuI	AGGCCT	1 cut(s)	1783
StyD4I	CCNGG	5 cut(s)	38, 391, 1311, 1359, 1473
TaiI	ACGT	4 cut(s)	1033, 2065, 2528, 2701
TaqI	TCGA	9 cut(s)	70, 377, 683, 1416, 1738, 2004, 2254, 2514, 2593
TaqII	GACCGA	1 cut(s)	2285
TatI	WGTACW	2 cut(s)	954, 1764
TauI	GCSGC	2 cut(s)	101, 209
TfiI	GAWTC	5 cut(s)	452, 677, 685, 2125, 2608
TscAI	CASTG	6 cut(s)	932, 1177, 1462, 1702, 2232, 2345
TseFI	GTSAC	6 cut(s)	617, 1189, 1264, 1477, 2212, 2641
TseI	GCWGC	2 cut(s)	353, 2159
Tsp45I	GTSAC	6 cut(s)	617, 1189, 1264, 1477, 2212, 2641
TspGWI	ACGGA	2 cut(s)	1007, 1916
TspRI	CASTG	6 cut(s)	932, 1177, 1462, 1702, 2232, 2345
Tth111I	GACNNNGTC	2 cut(s)	1475, 2210
Van91I	CCANNNNNTGG	1 cut(s)	2239
Vha464I	CTTAAG	1 cut(s)	2398
VpaK11BI	GGWCC	2 cut(s)	266, 1471
VspI	ATTAAT	2 cut(s)	2010, 2100
XagI	CCTNNNNNAGG	2 cut(s)	1400, 2465
XapI	RAATTY	4 cut(s)	413, 496, 740, 2110
XbaI	TCTAGA	1 cut(s)	2507
XceI	RCATGY	3 cut(s)	1109, 1765, 2185
XhoI	CTCGAG	1 cut(s)	376
XmnI	GAANNNNTTC	3 cut(s)	905, 2393, 2503
XspI	CTAG	3 cut(s)	312, 477, 2508
Zsp2I	ATGCAT	3 cut(s)	1321, 1920, 2720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.