Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002968

Physical Location & Seq

Genomic Coordinates Reverse (-)

13496797 .. 13503204

Gene Structure 6408 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00393420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2652 bp

ATGCATCCCGGACCGGTTTGCGGTGAAGACGAAGGCCAAAGAGATCGAGGTCGGAGGTCCGGGCGGCGTGGTCGACCGCAAAGTGGTAGTCCGATCAAGGTCGACCGGAAAGTGGTTATCGGCGAGTCCACCCGACTAGAAAGTGGTCGGGATGTTCGGAGGGTTCGTCCGGCAACCGCGGCGCAGCCATCGCCGTCTTCTCGACGCAGAGGAGGGACGAGTAGGAATAGTTGTAGCAGGGCGGCAGCTAATGTTGAAGACAACAATGGTATTGGGAGGAACAAGGAGAGCAGGAGCACAAAGGACCTGGCATTGGACTCTGGGCTCAACTCCCAACCAGAGACCATGGCTTCCGGTGGGGATAACATCTCTGTTACTAAAGGCATTGTTTCTAGGGTTGAACCTACACAATATGTTCATGGTGCAACCCAGCTTATGGCAAAACAGATCGATGCAGCAATAAATCCCGGGAATAGTGGTGGCCCAGCAATCATGGGAAATAAAGTTGCTGGTGTTGCTTTCCAAAACCTTTCCGGTGCAGGGAATATTGGTTATATAATTCCTGTTCCTGTAATAAAGCATTTTATTGCTGGAGTTGAAGAAAGAGGTAAATATTATGGAGATGGAGATGAAGATGAATATAGAGACCCTTTGGTGAGAGAGGTTTGTAGGTTAATTGAGCTTAGAACAGCTTGGACCCCAAAGTTTGAAGGTGAATTAAGGCACTTGTTACGAAGCTTGAAGCCAAAGCAGGCTTGTGCTGTTTTGAAGTCTCAGGCTGATGAAAGAGTTGCTTTGGAGGTTTTCTACTGGGCTGATAGGCAGTGGAGGTATAAGCATGACCCGATTGTGTACTATGCAATGCTTGAGGTGCTTAGTAAGACCAAGTTGTGCCAAGGTGCTAGGAGGATTCTTAGGTTAATGGCCCGTAGGCGGATTGAGCTTCGTTCTGAAGCTTTTGGTCATGTGATGGTGTCATATAGTCGAGCGGGCAAGTTAAGACATGCGTTGCGTGTGTTGACTTTGATGCAGAAAGCGGGGCTTGAGCTTGATTTGTCAATGTGTAATACTGCAATTTATGTTTTGGTGAAAGGTAATAAGTTAGAGAAGGCGTTGAGGACCTTGGAAAGGATGAAGCTTGTTGGGATTGCACCAAATGTTGTCACTTATAACTGTTTGATAAAGGGGTATTGTGATTTGCATCGTGTAGAAGATGCAATCCAGGTGATTGATGAAATGCCAATGAAGGGGTGTGCTCCTGATAAAGTTAGTTATTATACTGTGATGAATTTCCTTTGTAAGGAGAAGAGGGTCAAAGAAGTGAGGGACTTGATGGAGAAGATGATCAAGGATGGTGGGTTGTTACCAGACCAGGTCACTTATAGTAATCTTGTCCATGTGCTTTGTAAGCACGGCTATGGTGATGAGGCACTTGAATTTTTAAGGGAAGCCGAAGAGAAGGGATTTCGGTTTGATAAGGTTGGGTATACTGCAATTGTACATTCATTTTGTAAGGATGGTAGGATTGACATGGCAAAAGAAATTGTTAGTGAAATGTTCTCAAAAGGTTGCACACCAGATGTTGTTACATACACTGCTGTTCTGAATGGGTATTGTCGACTTGGGAAGGTGGATCAAGCTAAAAAGATGCTTCAACACATGTATAAGCATGGGTGCAAGCCAAATACTGTATCATATACGGCCATAATAAATGGGCTTTGTCGTGGTGGGAACTCATTGGAGGCAAGGGAGATGATGAACATGAGTGAGGAAGAATGGTGGACACCAAATGCCATCACTTACAGTGTTCTAATGCATGGGTTTCGGAGGGAAGGAAAATTGGTTGAGGCTTGTGATATTGTCAAACAGATGATTAAAAAGGGACTTTTTCCTACCCCAGTTGAAATTAATCTCTTAATTCAGTCTCTTTGCCAAGAGGGGAAGATGGATGAGGCTAAACATTTCATGGAGGAGTGTTTAAACAAAGGTTGTGCTGTTAATGTTGTCAATTTTACTACTGTAATTCATGGTTATTGTCAAAAAGATGACTTGGAAGCTGCTCTATCATTGCTTGATGACATGTATCTCAGCAACAAACACGCAGATCCAGTAACTTATACAGCAGTGATCAATGCATTGGGAAAGAACGGTAGAATACAAAAGGCAACAGAACTTATGATGAAGATGCTGGGTAAGGGTATTGACCCGACTCCCGTCACATACAGGACAATCATCCACTGGTATTGTAAGATGAATAGGGTGGATGATTTGTTGAAATTATTGGAGAAGATGTTCTTGAGGCAACGTTGCAAAACAACATATAATCAAGTGATTGAGAAGCTTTGTAGTTTTGGGAACTTTGAGGATGCTGATAAACTATTGGGTAAGGTGTTGAGAACAGCTTCAAGAGTTGATGCTAAAACATGCCATGTTGTTATGGATGGTTATTTGAGAAAAGGGGTTCCTCTGTTAGCATACAAAGTGGCTTGTCGAATGTTCAATCGGAATCTGATTCCAGATTTAAAGTTGTGTCAGAAGGTGACCAAGAGATTGATGCTAGAAGGAAACTCCAAAGAGGCAGACAACCTTATGTTACGGTTTGTTGAGCGTGGGTGCATATCAAACCAACTTCAGGAACATCTGGAAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

883

Amino Acids

99.38

Weight (kDa)

9.18

Isoelectric Point (pI)

38.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	294 - 379	3.2e-06	Fungal tetratrico peptide repeats
PPR_long	PF17177	320 - 483	3.7e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	339 - 397	5.4e-12	Pentatricopeptide repeat domain
PPR_2	PF13041	354 - 399	3.5e-11	PPR repeat family
PPR_1	PF12854	382 - 413	1.3e-11	PPR repeat
PPR_2	PF13041	385 - 434	5e-16	PPR repeat family
PPR	PF01535	388 - 418	5.5e-07	PPR repeat
PPR_2	PF13041	420 - 470	1.1e-09	PPR repeat family
PPR_1	PF12854	453 - 483	1.1e-07	PPR repeat
PPR_2	PF13041	456 - 498	5.8e-06	PPR repeat family
PPR_long	PF17177	478 - 611	2.9e-10	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	481 - 537	2.6e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	487 - 519	2.3e-06	PPR repeat
PPR_2	PF13041	493 - 540	2.1e-14	PPR repeat family
PPR_1	PF12854	522 - 554	2.3e-12	PPR repeat
PPR_3	PF13812	525 - 571	8.8e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	526 - 575	5.5e-19	PPR repeat family
PPR	PF01535	529 - 559	4.2e-07	PPR repeat
PPR_1	PF12854	557 - 587	2e-08	PPR repeat
TPR_24	PF23276	597 - 691	3.7e-06	Fungal tetratrico peptide repeats
PPR_1	PF12854	662 - 694	4.8e-08	PPR repeat
PPR_2	PF13041	667 - 713	1.2e-10	PPR repeat family
PPR_3	PF13812	689 - 750	2.3e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	702 - 746	1.6e-10	PPR repeat family
PPR	PF01535	704 - 734	7.9e-07	PPR repeat
PPR_1	PF12854	732 - 764	1.1e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30290 AT1G30290
fragaria_vesca	FvH4_3g05050 FvH4_3g05050 FvH4_3g05050 FvH4_3g05050 FvH4_3g05050 FvH4_3g05050 FvH4_3g05050 FvH4_3g05050
malus_domestica	MD10G1258300.v1.1
prunus_persica	Prupe.4G085500_v2.0.a1 Prupe.4G085500_v2.0.a1
pyrus_communis	pycom05g26000 pycom10g21460
rosa_chinensis	RchiOBHm_Chr3g0490541 RchiOBHm_Chr3g0490551 RchiOBHm_Chr5g0014911
rosa_laevigata	RLG00000022885 RLG00000032150
rosa_multiflora	Rmu_sc0003862.1_g000007 Rmu_sc0013610.1_g000002
rosa_roxburghii	Rroxscaffold_1G00061660 Rroxscaffold_6G00393420
rosa_rugosa	Rorug03G0243900 Rorug05G0021400
rosa_samantha	Rh3AG293300 Rh3AG293400 Rh3BG329800 Rh3CG327300 Rh3CG327400 Rh3DG326700 Rh5AG117100 Rh5BG114100 Rh5CG125600 Rh5DG113500
rosa_wichuraiana	Rw3G025970 Rw5G010080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1170
AccB7I	CCANNNNNTGG	1 cut(s)	436
AccBSI	CCGCTC	1 cut(s)	989
AccI	GTMKAC	4 cut(s)	73, 102, 1487, 1618
AccII	CGCG	1 cut(s)	179
AciI	CCGC	9 cut(s)	21, 64, 77, 177, 179, 242, 934, 989, 1037
AclI	AACGTT	1 cut(s)	2305
AclWI	GGATC	2 cut(s)	1641, 2099
AcoI	YGGCCR	1 cut(s)	1701
AcsI	RAATTY	2 cut(s)	1288, 1436
AcuI	CTGAAG	2 cut(s)	972, 2615
AfaI	GTAC	2 cut(s)	854, 1500
AflIII	ACRYGT	2 cut(s)	1659, 2079
AgeI	ACCGGT	1 cut(s)	13
AjnI	CCWGG	3 cut(s)	306, 1221, 1371
AloI	GAACNNNNNNTCC	2 cut(s)	2276, 2308
Alw21I	GWGCWC	2 cut(s)	299, 1258
Alw26I	GTCTC	4 cut(s)	335, 639, 777, 1929
AlwI	GGATC	2 cut(s)	1641, 2099
Ama87I	CYCGRG	1 cut(s)	467
AoxI	GGCC	4 cut(s)	34, 481, 924, 1701
ApeKI	GCWGC	4 cut(s)	184, 245, 455, 2057
ApoI	RAATTY	2 cut(s)	1288, 1436
ArsI	GACNNNNNNTTYG	2 cut(s)	73, 105
AseI	ATTAAT	1 cut(s)	1908
AsiGI	ACCGGT	1 cut(s)	13
Asp700I	GAANNNNTTC	2 cut(s)	2291, 2401
AspLEI	GCGC	1 cut(s)	184
AspS9I	GGNCC	7 cut(s)	11, 57, 304, 482, 696, 925, 1119
AsuC2I	CCSGG	4 cut(s)	9, 61, 468, 469
AsuHPI	GGTGA	7 cut(s)	35, 667, 725, 1099, 1237, 1433, 2551
AvaI	CYCGRG	1 cut(s)	467
AvaII	GGWCC	5 cut(s)	11, 57, 304, 696, 1119
BanII	GRGCYC	1 cut(s)	327
BbsI	GAAGAC	3 cut(s)	33, 189, 264
Bbv12I	GWGCWC	2 cut(s)	299, 1258
BbvI	GCAGC	4 cut(s)	196, 257, 467, 2044
BccI	CCATC	9 cut(s)	196, 617, 964, 1327, 1346, 1511, 1802, 1939, 2435
BceAI	ACGGC	3 cut(s)	178, 1429, 1716
BcgI	CGANNNNNNTGC	2 cut(s)	1805, 1839
BciT130I	CCWGG	3 cut(s)	308, 1223, 1373
BclI	TGATCA	2 cut(s)	1344, 2127
BcnI	CCSGG	4 cut(s)	9, 61, 468, 469
BcoDI	GTCTC	4 cut(s)	335, 639, 777, 1929
BfaI	CTAG	5 cut(s)	137, 393, 903, 2558, 2650
BisI	GCNGC	7 cut(s)	65, 180, 185, 243, 246, 456, 2058
BlsI	GCNGC	7 cut(s)	66, 181, 186, 244, 247, 457, 2059
Bme1390I	CCNGG	7 cut(s)	9, 61, 308, 468, 469, 1223, 1373
Bme18I	GGWCC	5 cut(s)	11, 57, 304, 696, 1119
BmeT110I	CYCGRG	1 cut(s)	467
BmgT120I	GGNCC	7 cut(s)	11, 57, 304, 482, 696, 925, 1119
BmiI	GGNNCC	2 cut(s)	698, 2463
BmrFI	CCNGG	7 cut(s)	9, 61, 308, 468, 469, 1223, 1373
BmrI	ACTGGG	2 cut(s)	820, 1892
BmuI	ACTGGG	2 cut(s)	820, 1892
BoxI	GACNNNNGTC	1 cut(s)	2213
BpiI	GAAGAC	3 cut(s)	33, 189, 264
BpmI	CTGGAG	1 cut(s)	612
BpuEI	CTTGAG	3 cut(s)	887, 1064, 2317
BpuMI	CCSGG	4 cut(s)	9, 61, 468, 469
Bsa29I	ATCGAT	1 cut(s)	450
BsaBI	GATNNNNATC	1 cut(s)	1200
BsaI	GGTCTC	2 cut(s)	335, 639
BsaJI	CCNNGG	5 cut(s)	177, 345, 467, 895, 1122
BsaWI	WCCGGW	4 cut(s)	13, 105, 353, 533
BsaXI	ACNNNNNCTCC	4 cut(s)	151, 181, 2276, 2306
Bse118I	RCCGGY	1 cut(s)	13
Bse1I	ACTGG	4 cut(s)	815, 1898, 2108, 2243
Bse3DI	GCAATG	2 cut(s)	867, 2066
Bse8I	GATNNNNATC	1 cut(s)	1200
BseBI	CCWGG	3 cut(s)	308, 1223, 1373
BseCI	ATCGAT	1 cut(s)	450
BseDI	CCNNGG	5 cut(s)	177, 345, 467, 895, 1122
BseJI	GATNNNNATC	1 cut(s)	1200
BseMI	GCAATG	2 cut(s)	867, 2066
BseMII	CTCAG	2 cut(s)	788, 2101
BseNI	ACTGG	4 cut(s)	815, 1898, 2108, 2243
BseRI	GAGGAG	2 cut(s)	225, 1985
BseXI	GCAGC	4 cut(s)	196, 257, 467, 2044
BseYI	CCCAGC	3 cut(s)	429, 484, 2188
BsgI	GTGCAG	1 cut(s)	558
Bsh1236I	CGCG	1 cut(s)	179
Bsh1285I	CGRYCG	2 cut(s)	77, 106
BshFI	GGCC	4 cut(s)	36, 483, 926, 1703
BshTI	ACCGGT	1 cut(s)	13
BshVI	ATCGAT	1 cut(s)	450
BsiEI	CGRYCG	2 cut(s)	77, 106
BsiHKAI	GWGCWC	2 cut(s)	299, 1258
BsiHKCI	CYCGRG	1 cut(s)	467
BsiSI	CCGG	8 cut(s)	9, 14, 60, 106, 170, 354, 468, 534
BslFI	GGGAC	3 cut(s)	229, 1340, 1896
BsmAI	GTCTC	4 cut(s)	335, 639, 777, 1929
BsmFI	GGGAC	3 cut(s)	229, 1340, 1896
BsnI	GGCC	4 cut(s)	36, 483, 926, 1703
Bso31I	GGTCTC	2 cut(s)	335, 639
BsoBI	CYCGRG	1 cut(s)	467
Bsp1286I	GDGCHC	3 cut(s)	299, 327, 1258
Bsp1407I	TGTACA	1 cut(s)	1498
Bsp143I	GATC	7 cut(s)	43, 93, 447, 1344, 1633, 2104, 2127
Bsp19I	CCATGG	1 cut(s)	345
BspACI	CCGC	9 cut(s)	21, 64, 77, 177, 179, 242, 934, 989, 1037
BspANI	GGCC	4 cut(s)	36, 483, 926, 1703
BspCNI	CTCAG	2 cut(s)	787, 2100
BspDI	ATCGAT	1 cut(s)	450
BspFNI	CGCG	1 cut(s)	179
BspLI	GGNNCC	2 cut(s)	698, 2463
BspPI	GGATC	2 cut(s)	1641, 2099
BspTNI	GGTCTC	2 cut(s)	335, 639
BsrBI	CCGCTC	1 cut(s)	989
BsrDI	GCAATG	2 cut(s)	867, 2066
BsrFI	RCCGGY	1 cut(s)	13
BsrGI	TGTACA	1 cut(s)	1498
BsrI	ACTGG	4 cut(s)	815, 1898, 2108, 2243
BssAI	RCCGGY	1 cut(s)	13
BssECI	CCNNGG	5 cut(s)	177, 345, 467, 895, 1122
BssMI	GATC	7 cut(s)	43, 93, 447, 1344, 1633, 2104, 2127
BssNAI	GTATAC	1 cut(s)	1488
BssT1I	CCWWGG	3 cut(s)	345, 895, 1122
Bst1107I	GTATAC	1 cut(s)	1488
Bst2UI	CCWGG	3 cut(s)	308, 1223, 1373
Bst4CI	ACNGT	7 cut(s)	1175, 1282, 1690, 1805, 2020, 2150, 2598
Bst6I	CTCTTC	2 cut(s)	1301, 1449
BstAUI	TGTACA	1 cut(s)	1498
BstC8I	GCNNGC	3 cut(s)	753, 991, 1679
BstDEI	CTNAG	5 cut(s)	683, 774, 875, 914, 2087
BstDSI	CCRYGG	2 cut(s)	177, 345
BstEII	GGTNACC	1 cut(s)	2539
BstENI	CCTNNNNNAGG	2 cut(s)	1126, 1298
BstFNI	CGCG	1 cut(s)	179
BstHHI	GCGC	1 cut(s)	184
BstKTI	GATC	7 cut(s)	46, 96, 450, 1347, 1636, 2107, 2130
BstMAI	GTCTC	4 cut(s)	335, 639, 777, 1929
BstMBI	GATC	7 cut(s)	43, 93, 447, 1344, 1633, 2104, 2127
BstMCI	CGRYCG	2 cut(s)	77, 106
BstMWI	GCNNNNNNNGC	6 cut(s)	179, 190, 515, 871, 940, 1408
BstNI	CCWGG	3 cut(s)	308, 1223, 1373
BstNSI	RCATGY	4 cut(s)	1007, 1663, 2083, 2427
BstPAI	GACNNNNGTC	1 cut(s)	2213
BstPI	GGTNACC	1 cut(s)	2539
BstSCI	CCNGG	7 cut(s)	7, 59, 306, 466, 467, 1221, 1371
BstUI	CGCG	1 cut(s)	179
BstV1I	GCAGC	4 cut(s)	196, 257, 467, 2044
BstV2I	GAAGAC	3 cut(s)	33, 189, 264
BstX2I	RGATCY	1 cut(s)	2104
BstYI	RGATCY	1 cut(s)	2104
BstZ17I	GTATAC	1 cut(s)	1488
Bsu15I	ATCGAT	1 cut(s)	450
BsuRI	GGCC	4 cut(s)	36, 483, 926, 1703
BsuTUI	ATCGAT	1 cut(s)	450
BtgI	CCRYGG	2 cut(s)	177, 345
BtgZI	GCGATG	1 cut(s)	174
BtsI	GCAGTG	3 cut(s)	830, 1593, 2130
BtsIMutI	CAGTG	5 cut(s)	830, 1593, 1810, 2130, 2236
Cac8I	GCNNGC	3 cut(s)	753, 991, 1679
CfoI	GCGC	1 cut(s)	184
Cfr10I	RCCGGY	1 cut(s)	13
Cfr13I	GGNCC	7 cut(s)	11, 57, 304, 482, 696, 925, 1119
Cfr42I	CCGCGG	1 cut(s)	180
Cfr9I	CCCGGG	1 cut(s)	467
ClaI	ATCGAT	1 cut(s)	450
CpoI	CGGWCCG	1 cut(s)	11
CseI	GACGC	1 cut(s)	213
CsiI	ACCWGGT	1 cut(s)	1371
Csp6I	GTAC	2 cut(s)	853, 1499
CspAI	ACCGGT	1 cut(s)	13
CspCI	CAANNNNNGTGG	4 cut(s)	1336, 1371, 2225, 2260
CspI	CGGWCCG	1 cut(s)	11
CviQI	GTAC	2 cut(s)	853, 1499
DdeI	CTNAG	5 cut(s)	683, 774, 875, 914, 2087
DpnI	GATC	7 cut(s)	45, 95, 449, 1346, 1635, 2106, 2129
DpnII	GATC	7 cut(s)	43, 93, 447, 1344, 1633, 2104, 2127
DraI	TTTAAA	2 cut(s)	1980, 2523
EaeI	YGGCCR	1 cut(s)	1701
Eam1104I	CTCTTC	2 cut(s)	1301, 1449
EarI	CTCTTC	2 cut(s)	1301, 1449
EciI	GGCGGA	1 cut(s)	949
Eco130I	CCWWGG	3 cut(s)	345, 895, 1122
Eco24I	GRGCYC	1 cut(s)	327
Eco31I	GGTCTC	2 cut(s)	335, 639
Eco47I	GGWCC	5 cut(s)	11, 57, 304, 696, 1119
Eco57I	CTGAAG	2 cut(s)	972, 2615
Eco88I	CYCGRG	1 cut(s)	467
Eco91I	GGTNACC	1 cut(s)	2539
EcoNI	CCTNNNNNAGG	2 cut(s)	1126, 1298
EcoO109I	RGGNCCY	2 cut(s)	304, 1119
EcoO65I	GGTNACC	1 cut(s)	2539
EcoRII	CCWGG	3 cut(s)	306, 1221, 1371
EcoT14I	CCWWGG	3 cut(s)	345, 895, 1122
EcoT22I	ATGCAT	3 cut(s)	6, 1818, 2137
EcoT38I	GRGCYC	1 cut(s)	327
ErhI	CCWWGG	3 cut(s)	345, 895, 1122
FalI	AAGNNNNNCTT	6 cut(s)	778, 810, 1026, 1058, 2279, 2311
FaqI	GGGAC	3 cut(s)	229, 1340, 1896
FauI	CCCGC	2 cut(s)	982, 1030
FbaI	TGATCA	2 cut(s)	1344, 2127
FblI	GTMKAC	4 cut(s)	73, 102, 1487, 1618
Fnu4HI	GCNGC	7 cut(s)	65, 180, 185, 243, 246, 456, 2058
FokI	GGATG	9 cut(s)	164, 1144, 1364, 1529, 1961, 2219, 2276, 2378, 2453
FriOI	GRGCYC	1 cut(s)	327
Fsp4HI	GCNGC	7 cut(s)	65, 180, 185, 243, 246, 456, 2058
FspBI	CTAG	5 cut(s)	137, 393, 903, 2558, 2650
GlaI	GCGC	1 cut(s)	183
GluI	GCNGC	7 cut(s)	65, 180, 185, 243, 246, 456, 2058
GsaI	CCCAGC	3 cut(s)	433, 488, 2192
GsuI	CTGGAG	1 cut(s)	612
HaeIII	GGCC	4 cut(s)	36, 483, 926, 1703
HapII	CCGG	8 cut(s)	9, 14, 60, 106, 170, 354, 468, 534
HgaI	GACGC	1 cut(s)	213
HhaI	GCGC	1 cut(s)	184
Hin6I	GCGC	1 cut(s)	182
HinP1I	GCGC	1 cut(s)	182
HincII	GTYRAC	4 cut(s)	74, 103, 1020, 1619
HindII	GTYRAC	4 cut(s)	74, 103, 1020, 1619
HindIII	AAGCTT	4 cut(s)	736, 954, 1136, 2339
HinfI	GANTC	6 cut(s)	125, 317, 910, 2209, 2506, 2512
HpaII	CCGG	8 cut(s)	9, 14, 60, 106, 170, 354, 468, 534
HphI	GGTGA	7 cut(s)	35, 667, 725, 1099, 1237, 1433, 2551
Hpy166II	GTNNAC	8 cut(s)	74, 103, 129, 853, 1020, 1488, 1619, 1782
Hpy188I	TCNGA	9 cut(s)	54, 93, 159, 952, 1605, 1827, 2505, 2511, 2535
Hpy188III	TCNNGA	8 cut(s)	149, 201, 1259, 2296, 2406, 2516, 2633, 2642
Hpy8I	GTNNAC	8 cut(s)	74, 103, 129, 853, 1020, 1488, 1619, 1782
Hpy99I	CGWCG	1 cut(s)	207
HpyAV	CCTTC	9 cut(s)	26, 704, 1102, 1240, 1453, 1621, 1826, 2530, 2555
HpyCH4III	ACNGT	7 cut(s)	1175, 1282, 1690, 1805, 2020, 2150, 2598
HpyCH4IV	ACGT	1 cut(s)	2305
HpyF10VI	GCNNNNNNNGC	6 cut(s)	179, 190, 515, 871, 940, 1408
HpyF3I	CTNAG	5 cut(s)	683, 774, 875, 914, 2087
HpySE526I	ACGT	1 cut(s)	2305
HspAI	GCGC	1 cut(s)	182
Ksp22I	TGATCA	2 cut(s)	1344, 2127
KspI	CCGCGG	1 cut(s)	180
Kzo9I	GATC	7 cut(s)	43, 93, 447, 1344, 1633, 2104, 2127
LmnI	GCTCC	2 cut(s)	294, 1261
Lsp1109I	GCAGC	4 cut(s)	196, 257, 467, 2044
MabI	ACCWGGT	1 cut(s)	1371
MaeI	CTAG	5 cut(s)	137, 393, 903, 2558, 2650
MaeII	ACGT	1 cut(s)	2305
MalI	GATC	7 cut(s)	45, 95, 449, 1346, 1635, 2106, 2129
MbiI	CCGCTC	1 cut(s)	989
MboI	GATC	7 cut(s)	43, 93, 447, 1344, 1633, 2104, 2127
MfeI	CAATTG	1 cut(s)	1494
MflI	RGATCY	1 cut(s)	2104
MhlI	GDGCHC	3 cut(s)	299, 327, 1258
MlyI	GAGTC	3 cut(s)	134, 311, 2203
MmeI	TCCRAC	1 cut(s)	32
Mph1103I	ATGCAT	3 cut(s)	6, 1818, 2137
MroXI	GAANNNNTTC	2 cut(s)	2291, 2401
MslI	CAYNNNNRTG	1 cut(s)	1416
MspA1I	CMGCKG	1 cut(s)	179
MspI	CCGG	8 cut(s)	9, 14, 60, 106, 170, 354, 468, 534
MspR9I	CCNGG	7 cut(s)	9, 61, 308, 468, 469, 1223, 1373
MssI	GTTTAAAC	1 cut(s)	1980
MunI	CAATTG	1 cut(s)	1494
MvaI	CCWGG	3 cut(s)	308, 1223, 1373
MvnI	CGCG	1 cut(s)	179
MwoI	GCNNNNNNNGC	6 cut(s)	179, 190, 515, 871, 940, 1408
NciI	CCSGG	4 cut(s)	9, 61, 468, 469
NcoI	CCATGG	1 cut(s)	345
NdeII	GATC	7 cut(s)	43, 93, 447, 1344, 1633, 2104, 2127
NlaIV	GGNNCC	2 cut(s)	698, 2463
NmuCI	GTSAC	4 cut(s)	1162, 1375, 2215, 2539
NsiI	ATGCAT	3 cut(s)	6, 1818, 2137
NspI	RCATGY	4 cut(s)	1007, 1663, 2083, 2427
PciI	ACATGT	2 cut(s)	1659, 2079
PcsI	WCGNNNNNNNCGW	1 cut(s)	163
PdmI	GAANNNNTTC	2 cut(s)	2291, 2401
PfeI	GAWTC	3 cut(s)	910, 2506, 2512
PflFI	GACNNNGTC	1 cut(s)	1373
PflMI	CCANNNNNTGG	1 cut(s)	436
PfoI	TCCNGGA	1 cut(s)	7
PinAI	ACCGGT	1 cut(s)	13
PkrI	GCNGC	7 cut(s)	66, 181, 186, 244, 247, 457, 2059
PleI	GAGTC	3 cut(s)	133, 311, 2203
PmeI	GTTTAAAC	1 cut(s)	1980
PpsI	GAGTC	3 cut(s)	133, 311, 2203
PpuMI	RGGWCCY	2 cut(s)	304, 1119
PscI	ACATGT	2 cut(s)	1659, 2079
PshAI	GACNNNNGTC	1 cut(s)	2213
PshBI	ATTAAT	1 cut(s)	1908
PsiI	TTATAA	1 cut(s)	1170
Psp1406I	AACGTT	1 cut(s)	2305
Psp5II	RGGWCCY	2 cut(s)	304, 1119
Psp6I	CCWGG	3 cut(s)	306, 1221, 1371
PspEI	GGTNACC	1 cut(s)	2539
PspFI	CCCAGC	3 cut(s)	429, 484, 2188
PspGI	CCWGG	3 cut(s)	306, 1221, 1371
PspN4I	GGNNCC	2 cut(s)	698, 2463
PspPI	GGNCC	7 cut(s)	11, 57, 304, 482, 696, 925, 1119
PspPPI	RGGWCCY	2 cut(s)	304, 1119
PsuI	RGATCY	1 cut(s)	2104
PsyI	GACNNNGTC	1 cut(s)	1373
RsaI	GTAC	2 cut(s)	854, 1500
RsaNI	GTAC	2 cut(s)	853, 1499
RseI	CAYNNNNRTG	1 cut(s)	1416
Rsr2I	CGGWCCG	1 cut(s)	11
RsrII	CGGWCCG	1 cut(s)	11
SacII	CCGCGG	1 cut(s)	180
SalI	GTCGAC	3 cut(s)	72, 101, 1617
SatI	GCNGC	7 cut(s)	65, 180, 185, 243, 246, 456, 2058
Sau3AI	GATC	7 cut(s)	43, 93, 447, 1344, 1633, 2104, 2127
Sau96I	GGNCC	7 cut(s)	11, 57, 304, 482, 696, 925, 1119
SchI	GAGTC	3 cut(s)	134, 311, 2203
ScrFI	CCNGG	7 cut(s)	9, 61, 308, 468, 469, 1223, 1373
SduI	GDGCHC	3 cut(s)	299, 327, 1258
SexAI	ACCWGGT	1 cut(s)	1371
Sfr303I	CCGCGG	1 cut(s)	180
SgrBI	CCGCGG	1 cut(s)	180
SinI	GGWCC	5 cut(s)	11, 57, 304, 696, 1119
SmaI	CCCGGG	1 cut(s)	469
SmiMI	CAYNNNNRTG	1 cut(s)	1416
SmlI	CTYRAG	3 cut(s)	866, 1043, 2296
SmoI	CTYRAG	3 cut(s)	866, 1043, 2296
SsiI	CCGC	9 cut(s)	21, 64, 77, 177, 179, 242, 934, 989, 1037
SspI	AATATT	2 cut(s)	547, 614
SspMI	CTAG	5 cut(s)	137, 393, 903, 2558, 2650
StyD4I	CCNGG	7 cut(s)	7, 59, 306, 466, 467, 1221, 1371
StyI	CCWWGG	3 cut(s)	345, 895, 1122
TaaI	ACNGT	7 cut(s)	1175, 1282, 1690, 1805, 2020, 2150, 2598
TaiI	ACGT	1 cut(s)	2308
TaqI	TCGA	8 cut(s)	46, 73, 102, 202, 450, 985, 1618, 2491
TatI	WGTACW	2 cut(s)	852, 1498
TauI	GCSGC	3 cut(s)	67, 182, 245
TfiI	GAWTC	3 cut(s)	910, 2506, 2512
TscAI	CASTG	5 cut(s)	830, 1600, 1810, 2130, 2243
TseFI	GTSAC	4 cut(s)	1162, 1375, 2215, 2539
TseI	GCWGC	4 cut(s)	184, 245, 455, 2057
Tsp45I	GTSAC	4 cut(s)	1162, 1375, 2215, 2539
TspMI	CCCGGG	1 cut(s)	467
TspRI	CASTG	5 cut(s)	830, 1600, 1810, 2130, 2243
Tth111I	GACNNNGTC	1 cut(s)	1373
Van91I	CCANNNNNTGG	1 cut(s)	436
VpaK11BI	GGWCC	5 cut(s)	11, 57, 304, 696, 1119
VspI	ATTAAT	1 cut(s)	1908
XagI	CCTNNNNNAGG	2 cut(s)	1126, 1298
XapI	RAATTY	2 cut(s)	1288, 1436
XceI	RCATGY	4 cut(s)	1007, 1663, 2083, 2427
XmaI	CCCGGG	1 cut(s)	467
XmiI	GTMKAC	4 cut(s)	73, 102, 1487, 1618
XmnI	GAANNNNTTC	2 cut(s)	2291, 2401
XspI	CTAG	5 cut(s)	137, 393, 903, 2558, 2650
Zsp2I	ATGCAT	3 cut(s)	6, 1818, 2137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.