Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0002968

Physical Location & Seq

Genomic Coordinates Forward (+)

35775537 .. 35779166

Gene Structure 3630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG327300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1983 bp

ATGTTGGTTACATCCGCCCGTACAGTCCTCAGGAGGCGGCTTTGCTCTATAGAGTCTACGTCAAGGAGTAGGAATAGTTGTAGCAGGGCGGCAGCTAATGTTGAAGACAACAATGGTATTGGGAGGAACAAGGAGAGCAGGATGCAACCAGAGACCATGGCTTCCGGTGGGGATAACATCTCTGCTACTAAAGGCGTTGTTTCTAGGGTTGAACCTACACAATATGTTCACGGTGCAACCCAGCTTATGGCAATACAGATTGATGCAGCAATAAATCCCGGGAATAGTGGTAGGCCAGCAATCATGGGAAATAAAGTTGATGGTGTTGCTTTCCAAAACCTTTCTGGTGCAGAGAATATTGGTTATATAATTCCTGTTCCTGTAATAAAGCATTTTATTGCTGGAGTTGAAGAAAGAGGTAAATATTATGGAGATGGAGATGAAGATGAATATAGAGACCCTTTGGTGAGAGAGGTTTGTAGGTTAATTGAGCTTAGAACAGCTTGGACCCCAAAGTTTGAAGGTGAATTAAGGCACTTGTTACGAAGCTTGAAGCCAAAGCAGGTTTGTGCTGTTTTGAAGTCTCAGGCTGATGAAAGAGTTGCTTTGGAGGTTTTCTACTGGGCTGATAGGCAGTGGAGGTATAAGCATGACCCAATTGTGTACTATGCAATGCTTGAGGTGCTTAGTAAGACCAAGTTGTGCCAAGGTGCTAGGAGGATTCTTAGGTTAATGGCCCGTAGGCGGATTGAGCTTCGTTCTGAAGCTTTTGGTCATGTGATGGTGTCATATAGTCGAGCGGGCAAGTTAAGACATGCGTTGCGTGTGTTGACTTTGATGCAGAAAGCGGGGCTTGAGCTTGATTTGTCAATGTGTAATACTGCAATTTATGTTTTGGTGAAAGGTAATAAGTTAGAGAAGGCGTTGAGGACCTTGGAAAGGATGAAGCTTGTTGGGATTGCACCAAATGTTGTCACTTATAACTGTTTGATAAAGGGGTATTGTGATTTGCATCGTGTAGAAGATGCAATCCAGGTGATTGATGAAATGCCGATGAAGGGTTGTGCTCCTGATAAAGTTAGTTATTATACTGTCATGAATTTCCTTTGTAAGGAGAAGAGGGTCAAAGAAGTGAGGGACTTGATGGAGAAGATGATCAAGGATGGTGGGTTGTTACCAGACCAGGTCACTTATAGTAATCTTGTCCATGTGCTTTGTAAGCACGGCTATGGTGATGAGGCACTTGAATTTTTAAGGGAAGCCGAAGAGAGGGGATTTCGGTTTGATAAGGTTGGGTATAGTGCAATTGTACATTCATTTTGTAAGGATGGTAGGATTGACATGGCAAAAGAAATTGTTAGTGAAATGTTCTCAAAAGGTTGCACACCAGATGTTGTTACATACACTACTGTTCTGAATGGGTATTGTCGACTTGGGAAGGTGGATCAAGCTAAAAAGATGCTTCAGCACATGTATAAGCATGGGTGCAAGCCAAATACTGTATCATATACGGCCATAATAAATGGGCTTTGTCATGGTGGGAACTTATTGGAGGCAAGGGAGATGATGAACATGAGTGAGGAAGAATGGTGGACACCAAATGCCATCACTTACAGTGTTCTGATGCATGGGTTCCGGAGGGAAGGGAAATTGGTTGAGGCTTGTGATATTGTCAAACAGATGATTAAAAAGGGACTTTTTCCTACCCCAATTGAAATTAATCTCTTAATTCAGTCTCTTTGCCAAGAGGGGAAGATGGATGAGGCTAAACATTTCATGGAGGAGTGTTTAAACAAAGGTTGTGCTGTTAATGTTGTCAATTTTACTACTGTTATTCATGGTTATTGTCAAAAAGATGACTTGGAAGCTGCTCTGTCATTGCTTGATGACATGTATCTCAGCAAGAAACACGCAGATGCAGTAACTTATACAGCAGTGATCAATGCATTGGGAAAGAAGGGTAGAATACAAGAGGCAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

660

Amino Acids

74.42

Weight (kDa)

8.78

Isoelectric Point (pI)

36.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	231 - 316	2.1e-06	Fungal tetratrico peptide repeats
PPR_long	PF17177	257 - 420	2.3e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	280 - 334	1.5e-11	Pentatricopeptide repeat domain
PPR_2	PF13041	291 - 336	2.5e-11	PPR repeat family
PPR_1	PF12854	319 - 350	8.9e-12	PPR repeat
PPR_2	PF13041	322 - 371	3.4e-16	PPR repeat family
PPR	PF01535	325 - 355	3.9e-07	PPR repeat
PPR_2	PF13041	357 - 407	7.8e-10	PPR repeat family
PPR_1	PF12854	390 - 420	7.6e-08	PPR repeat
PPR_2	PF13041	393 - 442	1.2e-08	PPR repeat family
PPR	PF01535	396 - 426	7.8e-06	PPR repeat
PPR_long	PF17177	418 - 547	2.4e-09	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	418 - 468	1.4e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	424 - 456	2.7e-06	PPR repeat
PPR_2	PF13041	430 - 477	2e-14	PPR repeat family
PPR_1	PF12854	459 - 491	1.8e-13	PPR repeat
PPR_3	PF13812	459 - 508	3.9e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	463 - 512	1.8e-19	PPR repeat family
PPR	PF01535	466 - 496	1.7e-07	PPR repeat
PPR_1	PF12854	494 - 524	2.2e-08	PPR repeat
TPR_24	PF23276	534 - 628	3.1e-06	Fungal tetratrico peptide repeats
PPR_1	PF12854	599 - 631	3.4e-08	PPR repeat
PPR_2	PF13041	604 - 652	2e-11	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30290 AT1G30290
fragaria_vesca	FvH4_3g05050 FvH4_3g05050 FvH4_3g05050 FvH4_3g05050 FvH4_3g05050 FvH4_3g05050 FvH4_3g05050 FvH4_3g05050
malus_domestica	MD10G1258300.v1.1
prunus_persica	Prupe.4G085500_v2.0.a1 Prupe.4G085500_v2.0.a1
pyrus_communis	pycom05g26000 pycom10g21460
rosa_chinensis	RchiOBHm_Chr3g0490541 RchiOBHm_Chr3g0490551 RchiOBHm_Chr5g0014911
rosa_laevigata	RLG00000022885 RLG00000032150
rosa_multiflora	Rmu_sc0003862.1_g000007 Rmu_sc0013610.1_g000002
rosa_roxburghii	Rroxscaffold_1G00061660 Rroxscaffold_6G00393420
rosa_rugosa	Rorug03G0243900 Rorug05G0021400
rosa_samantha	Rh3AG293300 Rh3AG293400 Rh3BG329800 Rh3CG327300 Rh3CG327400 Rh3DG326700 Rh5AG117100 Rh5BG114100 Rh5CG125600 Rh5DG113500
rosa_wichuraiana	Rw3G025970 Rw5G010080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	981
Acc36I	ACCTGC	1 cut(s)	553
AccB7I	CCANNNNNTGG	1 cut(s)	247
AccBSI	CCGCTC	1 cut(s)	800
AccI	GTMKAC	2 cut(s)	56, 1429
AccIII	TCCGGA	1 cut(s)	1635
AciI	CCGC	6 cut(s)	15, 37, 89, 745, 800, 848
AclWI	GGATC	1 cut(s)	1452
AcoI	YGGCCR	1 cut(s)	1512
AcsI	RAATTY	2 cut(s)	1099, 1247
AcuI	CTGAAG	2 cut(s)	783, 1448
AfaI	GTAC	3 cut(s)	22, 665, 1311
AfiI	CCNNNNNNNGG	6 cut(s)	247, 744, 939, 1058, 1111, 1269
AflIII	ACRYGT	2 cut(s)	1470, 1890
AgsI	TTSAA	8 cut(s)	104, 212, 410, 521, 553, 580, 1247, 1715
AjnI	CCWGG	2 cut(s)	1032, 1182
Alw21I	GWGCWC	1 cut(s)	1069
Alw26I	GTCTC	4 cut(s)	146, 450, 588, 1740
AlwI	GGATC	1 cut(s)	1452
Ama87I	CYCGRG	1 cut(s)	278
Aor13HI	TCCGGA	1 cut(s)	1635
AoxI	GGCC	3 cut(s)	293, 735, 1512
ApeKI	GCWGC	3 cut(s)	92, 266, 1868
ApoI	RAATTY	2 cut(s)	1099, 1247
AseI	ATTAAT	1 cut(s)	1719
AspS9I	GGNCC	3 cut(s)	507, 736, 930
AsuC2I	CCSGG	2 cut(s)	279, 280
AsuHPI	GGTGA	5 cut(s)	478, 536, 910, 1048, 1244
AvaI	CYCGRG	1 cut(s)	278
AvaII	GGWCC	2 cut(s)	507, 930
AxyI	CCTNAGG	1 cut(s)	29
BbsI	GAAGAC	1 cut(s)	111
Bbv12I	GWGCWC	1 cut(s)	1069
BbvI	GCAGC	3 cut(s)	104, 278, 1855
BccI	CCATC	8 cut(s)	314, 428, 775, 1138, 1157, 1322, 1613, 1750
BceAI	ACGGC	2 cut(s)	1240, 1527
BciT130I	CCWGG	2 cut(s)	1034, 1184
BclI	TGATCA	2 cut(s)	1155, 1938
BcnI	CCSGG	2 cut(s)	279, 280
BcoDI	GTCTC	4 cut(s)	146, 450, 588, 1740
BfaI	CTAG	2 cut(s)	204, 714
BfmI	CTRYAG	1 cut(s)	48
BfuAI	ACCTGC	1 cut(s)	553
BisI	GCNGC	5 cut(s)	38, 90, 93, 267, 1869
BlsI	GCNGC	5 cut(s)	39, 91, 94, 268, 1870
Bme1390I	CCNGG	4 cut(s)	279, 280, 1034, 1184
Bme18I	GGWCC	2 cut(s)	507, 930
BmeT110I	CYCGRG	1 cut(s)	278
BmgT120I	GGNCC	3 cut(s)	507, 736, 930
BmiI	GGNNCC	2 cut(s)	509, 1634
BmrFI	CCNGG	4 cut(s)	279, 280, 1034, 1184
BmrI	ACTGGG	1 cut(s)	631
BmsI	GCATC	8 cut(s)	132, 253, 828, 1015, 1021, 1449, 1614, 1906
BmuI	ACTGGG	1 cut(s)	631
BpiI	GAAGAC	1 cut(s)	111
BpmI	CTGGAG	1 cut(s)	423
BpuEI	CTTGAG	2 cut(s)	698, 875
BpuMI	CCSGG	2 cut(s)	279, 280
BsaBI	GATNNNNATC	1 cut(s)	1011
BsaI	GGTCTC	2 cut(s)	146, 450
BsaJI	CCNNGG	4 cut(s)	156, 278, 706, 933
BsaWI	WCCGGW	2 cut(s)	164, 1635
Bsc4I	CCNNNNNNNGG	6 cut(s)	247, 744, 939, 1058, 1111, 1269
Bse1I	ACTGG	1 cut(s)	626
Bse21I	CCTNAGG	1 cut(s)	29
Bse3DI	GCAATG	2 cut(s)	678, 1877
Bse8I	GATNNNNATC	1 cut(s)	1011
BseAI	TCCGGA	1 cut(s)	1635
BseBI	CCWGG	2 cut(s)	1034, 1184
BseDI	CCNNGG	4 cut(s)	156, 278, 706, 933
BseGI	GGATG	6 cut(s)	11, 147, 948, 1168, 1333, 1765
BseJI	GATNNNNATC	1 cut(s)	1011
BseLI	CCNNNNNNNGG	6 cut(s)	247, 744, 939, 1058, 1111, 1269
BseMI	GCAATG	2 cut(s)	678, 1877
BseMII	CTCAG	3 cut(s)	43, 599, 1912
BseNI	ACTGG	1 cut(s)	626
BseRI	GAGGAG	1 cut(s)	1796
BseXI	GCAGC	3 cut(s)	104, 278, 1855
BseYI	CCCAGC	1 cut(s)	240
BsgI	GTGCAG	1 cut(s)	369
BshFI	GGCC	3 cut(s)	295, 737, 1514
BsiHKAI	GWGCWC	1 cut(s)	1069
BsiHKCI	CYCGRG	1 cut(s)	278
BsiSI	CCGG	3 cut(s)	165, 279, 1636
BslFI	GGGAC	2 cut(s)	1151, 1707
BslI	CCNNNNNNNGG	6 cut(s)	247, 744, 939, 1058, 1111, 1269
BsmAI	GTCTC	4 cut(s)	146, 450, 588, 1740
BsmFI	GGGAC	2 cut(s)	1151, 1707
BsnI	GGCC	3 cut(s)	295, 737, 1514
Bso31I	GGTCTC	2 cut(s)	146, 450
BsoBI	CYCGRG	1 cut(s)	278
Bsp1286I	GDGCHC	1 cut(s)	1069
Bsp13I	TCCGGA	1 cut(s)	1635
Bsp1407I	TGTACA	1 cut(s)	1309
Bsp143I	GATC	3 cut(s)	1155, 1444, 1938
Bsp19I	CCATGG	1 cut(s)	156
BspACI	CCGC	6 cut(s)	15, 37, 89, 745, 800, 848
BspANI	GGCC	3 cut(s)	295, 737, 1514
BspCNI	CTCAG	3 cut(s)	42, 598, 1911
BspEI	TCCGGA	1 cut(s)	1635
BspHI	TCATGA	1 cut(s)	1095
BspLI	GGNNCC	2 cut(s)	509, 1634
BspMI	ACCTGC	1 cut(s)	553
BspPI	GGATC	1 cut(s)	1452
BspTNI	GGTCTC	2 cut(s)	146, 450
BsrBI	CCGCTC	1 cut(s)	800
BsrDI	GCAATG	2 cut(s)	678, 1877
BsrGI	TGTACA	1 cut(s)	1309
BsrI	ACTGG	1 cut(s)	626
BssECI	CCNNGG	4 cut(s)	156, 278, 706, 933
BssMI	GATC	3 cut(s)	1155, 1444, 1938
BssT1I	CCWWGG	3 cut(s)	156, 706, 933
Bst2UI	CCWGG	2 cut(s)	1034, 1184
Bst4CI	ACNGT	8 cut(s)	25, 233, 986, 1093, 1411, 1501, 1616, 1831
Bst6I	CTCTTC	2 cut(s)	1112, 1260
BstAUI	TGTACA	1 cut(s)	1309
BstC8I	GCNNGC	3 cut(s)	297, 802, 1490
BstDEI	CTNAG	6 cut(s)	29, 494, 585, 686, 725, 1898
BstDSI	CCRYGG	1 cut(s)	156
BstENI	CCTNNNNNAGG	2 cut(s)	937, 1109
BstF5I	GGATG	6 cut(s)	11, 147, 948, 1168, 1333, 1765
BstKTI	GATC	3 cut(s)	1158, 1447, 1941
BstMAI	GTCTC	4 cut(s)	146, 450, 588, 1740
BstMBI	GATC	3 cut(s)	1155, 1444, 1938
BstMWI	GCNNNNNNNGC	3 cut(s)	682, 751, 1219
BstNI	CCWGG	2 cut(s)	1034, 1184
BstNSI	RCATGY	3 cut(s)	818, 1474, 1894
BstSCI	CCNGG	4 cut(s)	277, 278, 1032, 1182
BstSFI	CTRYAG	1 cut(s)	48
BstV1I	GCAGC	3 cut(s)	104, 278, 1855
BstV2I	GAAGAC	1 cut(s)	111
Bsu36I	CCTNAGG	1 cut(s)	29
BsuRI	GGCC	3 cut(s)	295, 737, 1514
BtgI	CCRYGG	1 cut(s)	156
BtsCI	GGATG	6 cut(s)	11, 147, 948, 1168, 1333, 1765
BtsI	GCAGTG	2 cut(s)	641, 1941
BtsIMutI	CAGTG	3 cut(s)	641, 1621, 1941
BveI	ACCTGC	1 cut(s)	553
Cac8I	GCNNGC	3 cut(s)	297, 802, 1490
CciI	TCATGA	1 cut(s)	1095
Cfr13I	GGNCC	3 cut(s)	507, 736, 930
Cfr9I	CCCGGG	1 cut(s)	278
CsiI	ACCWGGT	1 cut(s)	1182
Csp6I	GTAC	3 cut(s)	21, 664, 1310
CspCI	CAANNNNNGTGG	2 cut(s)	1147, 1182
CviQI	GTAC	3 cut(s)	21, 664, 1310
DdeI	CTNAG	6 cut(s)	29, 494, 585, 686, 725, 1898
DpnI	GATC	3 cut(s)	1157, 1446, 1940
DpnII	GATC	3 cut(s)	1155, 1444, 1938
DraI	TTTAAA	1 cut(s)	1791
EaeI	YGGCCR	1 cut(s)	1512
Eam1104I	CTCTTC	2 cut(s)	1112, 1260
EarI	CTCTTC	2 cut(s)	1112, 1260
EciI	GGCGGA	2 cut(s)	4, 760
Eco130I	CCWWGG	3 cut(s)	156, 706, 933
Eco31I	GGTCTC	2 cut(s)	146, 450
Eco47I	GGWCC	2 cut(s)	507, 930
Eco57I	CTGAAG	2 cut(s)	783, 1448
Eco81I	CCTNAGG	1 cut(s)	29
Eco88I	CYCGRG	1 cut(s)	278
EcoNI	CCTNNNNNAGG	2 cut(s)	937, 1109
EcoO109I	RGGNCCY	1 cut(s)	930
EcoRII	CCWGG	2 cut(s)	1032, 1182
EcoT14I	CCWWGG	3 cut(s)	156, 706, 933
EcoT22I	ATGCAT	2 cut(s)	1629, 1948
ErhI	CCWWGG	3 cut(s)	156, 706, 933
FalI	AAGNNNNNCTT	4 cut(s)	589, 621, 837, 869
FaqI	GGGAC	2 cut(s)	1151, 1707
FauI	CCCGC	2 cut(s)	793, 841
FbaI	TGATCA	2 cut(s)	1155, 1938
FblI	GTMKAC	2 cut(s)	56, 1429
Fnu4HI	GCNGC	5 cut(s)	38, 90, 93, 267, 1869
FokI	GGATG	5 cut(s)	154, 955, 1175, 1340, 1772
Fsp4HI	GCNGC	5 cut(s)	38, 90, 93, 267, 1869
FspBI	CTAG	2 cut(s)	204, 714
GluI	GCNGC	5 cut(s)	38, 90, 93, 267, 1869
GsaI	CCCAGC	1 cut(s)	244
GsuI	CTGGAG	1 cut(s)	423
HaeIII	GGCC	3 cut(s)	295, 737, 1514
HapII	CCGG	3 cut(s)	165, 279, 1636
HincII	GTYRAC	2 cut(s)	831, 1430
HindII	GTYRAC	2 cut(s)	831, 1430
HindIII	AAGCTT	3 cut(s)	547, 765, 947
HinfI	GANTC	2 cut(s)	53, 721
HpaII	CCGG	3 cut(s)	165, 279, 1636
HphI	GGTGA	5 cut(s)	478, 536, 910, 1048, 1244
Hpy166II	GTNNAC	6 cut(s)	57, 229, 664, 831, 1430, 1593
Hpy188I	TCNGA	3 cut(s)	763, 1416, 1623
Hpy188III	TCNNGA	4 cut(s)	31, 1070, 1096, 1636
Hpy8I	GTNNAC	6 cut(s)	57, 229, 664, 831, 1430, 1593
HpyAV	CCTTC	6 cut(s)	515, 913, 1051, 1432, 1637, 1951
HpyCH4III	ACNGT	8 cut(s)	25, 233, 986, 1093, 1411, 1501, 1616, 1831
HpyCH4IV	ACGT	1 cut(s)	59
HpyF10VI	GCNNNNNNNGC	3 cut(s)	682, 751, 1219
HpyF3I	CTNAG	6 cut(s)	29, 494, 585, 686, 725, 1898
HpySE526I	ACGT	1 cut(s)	59
Kpn2I	TCCGGA	1 cut(s)	1635
Ksp22I	TGATCA	2 cut(s)	1155, 1938
Kzo9I	GATC	3 cut(s)	1155, 1444, 1938
LmnI	GCTCC	1 cut(s)	1072
Lsp1109I	GCAGC	3 cut(s)	104, 278, 1855
LweI	GCATC	8 cut(s)	132, 253, 828, 1015, 1021, 1449, 1614, 1906
MabI	ACCWGGT	1 cut(s)	1182
MaeI	CTAG	2 cut(s)	204, 714
MaeII	ACGT	1 cut(s)	59
MaeIII	GTNAC	7 cut(s)	7, 540, 973, 1173, 1186, 1396, 1921
MalI	GATC	3 cut(s)	1157, 1446, 1940
MbiI	CCGCTC	1 cut(s)	800
MboI	GATC	3 cut(s)	1155, 1444, 1938
MboII	GAAGA	9 cut(s)	116, 422, 455, 1034, 1129, 1162, 1277, 1595, 1765
MfeI	CAATTG	3 cut(s)	657, 1305, 1710
MhlI	GDGCHC	1 cut(s)	1069
MlyI	GAGTC	1 cut(s)	62
Mph1103I	ATGCAT	2 cut(s)	1629, 1948
MroI	TCCGGA	1 cut(s)	1635
MslI	CAYNNNNRTG	2 cut(s)	1227, 1914
MspI	CCGG	3 cut(s)	165, 279, 1636
MspR9I	CCNGG	4 cut(s)	279, 280, 1034, 1184
MssI	GTTTAAAC	1 cut(s)	1791
MunI	CAATTG	3 cut(s)	657, 1305, 1710
MvaI	CCWGG	2 cut(s)	1034, 1184
MwoI	GCNNNNNNNGC	3 cut(s)	682, 751, 1219
NciI	CCSGG	2 cut(s)	279, 280
NcoI	CCATGG	1 cut(s)	156
NdeII	GATC	3 cut(s)	1155, 1444, 1938
NlaIV	GGNNCC	2 cut(s)	509, 1634
NmuCI	GTSAC	2 cut(s)	973, 1186
NsiI	ATGCAT	2 cut(s)	1629, 1948
NspI	RCATGY	3 cut(s)	818, 1474, 1894
PagI	TCATGA	1 cut(s)	1095
PciI	ACATGT	2 cut(s)	1470, 1890
PfeI	GAWTC	1 cut(s)	721
PflFI	GACNNNGTC	1 cut(s)	1184
PflMI	CCANNNNNTGG	1 cut(s)	247
PkrI	GCNGC	5 cut(s)	39, 91, 94, 268, 1870
PleI	GAGTC	1 cut(s)	61
PmeI	GTTTAAAC	1 cut(s)	1791
PpsI	GAGTC	1 cut(s)	61
PpuMI	RGGWCCY	1 cut(s)	930
PscI	ACATGT	2 cut(s)	1470, 1890
PshBI	ATTAAT	1 cut(s)	1719
PsiI	TTATAA	1 cut(s)	981
Psp5II	RGGWCCY	1 cut(s)	930
Psp6I	CCWGG	2 cut(s)	1032, 1182
PspFI	CCCAGC	1 cut(s)	240
PspGI	CCWGG	2 cut(s)	1032, 1182
PspN4I	GGNNCC	2 cut(s)	509, 1634
PspPI	GGNCC	3 cut(s)	507, 736, 930
PspPPI	RGGWCCY	1 cut(s)	930
PsyI	GACNNNGTC	1 cut(s)	1184
RsaI	GTAC	3 cut(s)	22, 665, 1311
RsaNI	GTAC	3 cut(s)	21, 664, 1310
RseI	CAYNNNNRTG	2 cut(s)	1227, 1914
SalI	GTCGAC	1 cut(s)	1428
SatI	GCNGC	5 cut(s)	38, 90, 93, 267, 1869
Sau3AI	GATC	3 cut(s)	1155, 1444, 1938
Sau96I	GGNCC	3 cut(s)	507, 736, 930
SchI	GAGTC	1 cut(s)	62
ScrFI	CCNGG	4 cut(s)	279, 280, 1034, 1184
SduI	GDGCHC	1 cut(s)	1069
SexAI	ACCWGGT	1 cut(s)	1182
SfaNI	GCATC	8 cut(s)	132, 253, 828, 1015, 1021, 1449, 1614, 1906
SfcI	CTRYAG	1 cut(s)	48
SinI	GGWCC	2 cut(s)	507, 930
SmaI	CCCGGG	1 cut(s)	280
SmiMI	CAYNNNNRTG	2 cut(s)	1227, 1914
SmlI	CTYRAG	2 cut(s)	677, 854
SmoI	CTYRAG	2 cut(s)	677, 854
SsiI	CCGC	6 cut(s)	15, 37, 89, 745, 800, 848
SspI	AATATT	2 cut(s)	358, 425
SspMI	CTAG	2 cut(s)	204, 714
StyD4I	CCNGG	4 cut(s)	277, 278, 1032, 1182
StyI	CCWWGG	3 cut(s)	156, 706, 933
TaaI	ACNGT	8 cut(s)	25, 233, 986, 1093, 1411, 1501, 1616, 1831
TaiI	ACGT	1 cut(s)	62
TaqI	TCGA	2 cut(s)	796, 1429
TatI	WGTACW	2 cut(s)	663, 1309
TauI	GCSGC	2 cut(s)	40, 92
TfiI	GAWTC	1 cut(s)	721
TscAI	CASTG	3 cut(s)	641, 1621, 1941
TseFI	GTSAC	2 cut(s)	973, 1186
TseI	GCWGC	3 cut(s)	92, 266, 1868
Tsp45I	GTSAC	2 cut(s)	973, 1186
TspMI	CCCGGG	1 cut(s)	278
TspRI	CASTG	3 cut(s)	641, 1621, 1941
Tth111I	GACNNNGTC	1 cut(s)	1184
Van91I	CCANNNNNTGG	1 cut(s)	247
VpaK11BI	GGWCC	2 cut(s)	507, 930
VspI	ATTAAT	1 cut(s)	1719
XagI	CCTNNNNNAGG	2 cut(s)	937, 1109
XapI	RAATTY	2 cut(s)	1099, 1247
XceI	RCATGY	3 cut(s)	818, 1474, 1894
XcmI	CCANNNNNNNNNTGG	1 cut(s)	341
XmaI	CCCGGG	1 cut(s)	278
XmiI	GTMKAC	2 cut(s)	56, 1429
XspI	CTAG	2 cut(s)	204, 714
Zsp2I	ATGCAT	2 cut(s)	1629, 1948

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.