Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002968

Physical Location & Seq

Genomic Coordinates Reverse (-)

10273860 .. 10277961

Gene Structure 4102 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG113500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2469 bp

ATGGTCTCTATTCGTAGCTACATTCGAACCGGAGGAGCAGCTCGGCTCAGACCTCATAACTCGTGTGAGTCCACCACATCTTTCTCTCAGTACCCTTTAACTTTTGTTGAGCGCCCTCAATTTTTCTCAACAGTTAGCTCAACAAACTCAAGTTCAGATTTTTGCTCTGGAATTAGACCTCATTCTGTTGAAAGTTATGATTTTGATGATTCTAATAATGGGAAAGGTAGTTCTAGGAAAATGGGTAATCGAAATATGGCGGGTTTGAGTTTCTTAGGAGGTGCCCAGAGTGATTGTGAAAACCCACAAAGTGAAAGTTTCAAACTTTGTGAAGTTTCAGATAGCGGAGAAGAGAATAATAGTGATGGAGATGATGATGATGAGTTAATGATGTTGAATTCTAATAGGGGTCGTGAGCAAAAAGAGAATCTGGGAAGAGTTGAAGGAGATGGGGATGAGGATGAATATAGACACCCTTTGGTGAGAGAGGTTTGCAGGTTAATTGAGCTTAGAACAGCTTGGACCCCAAAGTTTGAAGGTGAGTTAAGGCACTTGTTCCGAAGCCTGAAGCCGAAGCAGGTCTGTGCTGTTTTGAAGTCTCAGGCTGATGAAAGGGTTGCTTTGAAGATTTTTTACTGGGCTGATAGGCAGTGGCGGTATAAGCATGACCCGATTGTGTACTATGCAATGCTTGAGGTGCTTGGCAAGACTAAGTTGTGCCAAGGTGCTAGGAGGGTTCTTAGGTTAATGGCCCGTAGGCGGATTGACCTTCGTTCTGAAGCTTTTCGCCATGTGATGGTGTCATATAGTCGAGCGGGCAAGTTGAGGCACGCGTTGCGTGTGTTGACTTTGATGCAGAAAGCGGGGCTTGAGCTTGATTTGTCAATGTGTAATACTGCAATTTATGTTTTGGTTAAGGCTAATAAGTTGGAGAAGGCGTTGAGGACCTTGGAAAGGATGAAGCTTGTTGGGATTGCACCAAATGTAATCACTTTTAACTGTTTGATAAAGGGGTATTGTGATCTGCATCGTGTAGAAGATGCAATCCAGGTGATTGATGAAATGCCGAGGAAGGGGTGTGCTCCTGATAAAGTTAGTTACTATACTGTGATGGATTTCCTTTGTAAGGAGAAGAGGGTCAGAGAAGTGAGGGACTTGATGGAGAAGATGATCAAGGATAGTGGGTTGTTACCAGACCAGGTCACGTATAATAATCTTGTCCATGTGCTTTGTAATCATAGCTATGGTGATGAGGCACTTGAATTTTTAAGGGAAGCTGAAGAGAAGGGATTTCGGTTTGATAAGGTTGGGTACAGTGCAATTGTACATTCATTTTGTAAGGATGGTCGGACTGACATGGCAAAAGAAATTGTTAGTGAAATGTTCTCAAAAGGTTGCATCCCAGATGTTGTAACATACACTGCTGTTCTGAATGGGTATTGTCGACTTGGGAAGTTGGATCAAGCTAAAAAGATGCTTCAGCACATGCATAAGCATGGTTGCAAGCCAAATACTGTATCATATACGGCCTTATTAAATGGGCTTTGTCATGATGGGAACTCATTGGAGGCAAGAGAGATGATGAACACGAGTGAGGAAGAATGGTGGACACCAAATGCCATCACTTATAGTGTTCTGATGCATGGGTTTCGGAGGGAGGGGAAATTGGTTGAGGCTTGTGATACTGTCAAAGAGATGATTAAAAAGGGATTTTTCCCTACCCCAGTTGAAATTAATCTCTTAATTCAGTCTCTTTGCCAAGAGGGGAAGATGGATGAGGCTAAGCGTTTCATGGAGGAGTGTCTAAATAAAGATTGTGCTGTTAATGTTGTCAATTTTACTACTGTTATTCATGGATATTGTCAAAAAGATGACTTGGAAGCTGCTCTATCGTTGCTTGATGACATGTATCTCAGCAATAAACACCCAGATGCAGTAACTTATACAGCAATGATCAGTGCATTGGGAAAGAAAGGTAGAATACAAGACGCAACTGAACTTATGATGAAGATGCTGAATAAGGGTATTGACCCGACTCCTGTCACATACAGGACGATCATCCATTGGTATTGTAAGATGAGTAGGGTGGATGATTTGTTGAAATTATTGGAGCAGATGTTCTTAAGGCAAAACTGCAAAACAGCATATAATCAAGTGATTGAGAAGCTTTGTAGTTTTGGGAACTTCGAGGACGCTGATAAACTATTGGGTAAGGTGTTGAGAACAGCTTCAAGAGTTGATGCTAAAACATGCCATGTTGTTATGGATGGTTATTTGAGAAAGGGGATTCCTCTGTCAGCATACAAAGTGGCTTGTCGAATGTTCAATCGGAATCTGATTCCTGATTTAAAGTTGTGTGAGAAGGTGTCGAAGAGACTGATGCTAGAAGGAAACTCCAAAGAGGCAGACAACCTTATGCTACGGTTTGTTGATCGTGGATGCATATCAAACCAACATCAGGAAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

822

Amino Acids

93.84

Weight (kDa)

8.33

Isoelectric Point (pI)

33.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	231 - 321	1.7e-07	Fungal tetratrico peptide repeats
PPR_long	PF17177	259 - 412	5e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	281 - 339	1.6e-12	Pentatricopeptide repeat domain
PPR_2	PF13041	295 - 341	4.1e-11	PPR repeat family
PPR_1	PF12854	324 - 355	1e-10	PPR repeat
PPR_2	PF13041	327 - 376	1.4e-15	PPR repeat family
PPR	PF01535	330 - 360	1.1e-06	PPR repeat
PPR_2	PF13041	362 - 412	2.4e-09	PPR repeat family
PPR_long	PF17177	388 - 553	1.2e-12	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	395 - 425	4.4e-06	PPR repeat
PPR_2	PF13041	398 - 447	1.5e-08	PPR repeat family
PPR_3	PF13812	423 - 478	1.1e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	429 - 461	8.3e-06	PPR repeat
PPR_2	PF13041	435 - 482	5.8e-13	PPR repeat family
PPR_3	PF13812	457 - 513	4.8e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	464 - 496	1e-11	PPR repeat
PPR_2	PF13041	468 - 517	5.1e-19	PPR repeat family
PPR	PF01535	471 - 501	8.2e-08	PPR repeat
PPR_1	PF12854	499 - 529	5.5e-07	PPR repeat
PPR_1	PF12854	604 - 636	3e-07	PPR repeat
PPR_2	PF13041	609 - 657	1.9e-13	PPR repeat family
PPR_3	PF13812	631 - 692	2.8e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	642 - 671	5.4e-07	PPR repeat
PPR_2	PF13041	643 - 692	3e-14	PPR repeat family
PPR	PF01535	646 - 676	6.1e-07	PPR repeat
PPR_1	PF12854	674 - 706	7.4e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30290 AT1G30290
fragaria_vesca	FvH4_3g05050 FvH4_3g05050 FvH4_3g05050 FvH4_3g05050 FvH4_3g05050 FvH4_3g05050 FvH4_3g05050 FvH4_3g05050
malus_domestica	MD10G1258300.v1.1
prunus_persica	Prupe.4G085500_v2.0.a1 Prupe.4G085500_v2.0.a1
pyrus_communis	pycom05g26000 pycom10g21460
rosa_chinensis	RchiOBHm_Chr3g0490541 RchiOBHm_Chr3g0490551 RchiOBHm_Chr5g0014911
rosa_laevigata	RLG00000022885 RLG00000032150
rosa_multiflora	Rmu_sc0003862.1_g000007 Rmu_sc0013610.1_g000002
rosa_roxburghii	Rroxscaffold_1G00061660 Rroxscaffold_6G00393420
rosa_rugosa	Rorug03G0243900 Rorug05G0021400
rosa_samantha	Rh3AG293300 Rh3AG293400 Rh3BG329800 Rh3CG327300 Rh3CG327400 Rh3DG326700 Rh5AG117100 Rh5BG114100 Rh5CG125600 Rh5DG113500
rosa_wichuraiana	Rw3G025970 Rw5G010080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	486, 568
AccB1I	GGYRCC	1 cut(s)	281
AccB7I	CCANNNNNTGG	1 cut(s)	796
AccBSI	CCGCTC	1 cut(s)	815
AccI	GTMKAC	1 cut(s)	1444
AccII	CGCG	1 cut(s)	833
AciI	CCGC	6 cut(s)	260, 345, 655, 760, 815, 863
AclWI	GGATC	1 cut(s)	1467
AcsI	RAATTY	2 cut(s)	397, 1262
AcuI	CTGAAG	4 cut(s)	587, 798, 1299, 1463
AdeI	CACNNNGTG	1 cut(s)	311
AfaI	GTAC	4 cut(s)	92, 680, 1313, 1326
AfiI	CCNNNNNNNGG	6 cut(s)	759, 796, 954, 1073, 1126, 2458
AflII	CTTAAG	1 cut(s)	2122
AflIII	ACRYGT	2 cut(s)	831, 1905
AjnI	CCWGG	2 cut(s)	1047, 1197
AloI	GAACNNNNNNTCC	4 cut(s)	214, 246, 2102, 2134
Alw21I	GWGCWC	1 cut(s)	1084
Alw26I	GTCTC	4 cut(s)	10, 603, 1755, 2368
AlwI	GGATC	1 cut(s)	1467
AoxI	GGCC	2 cut(s)	750, 1527
ApeKI	GCWGC	2 cut(s)	38, 1883
ApoI	RAATTY	2 cut(s)	397, 1262
AseI	ATTAAT	1 cut(s)	1734
Asp700I	GAANNNNTTC	2 cut(s)	783, 2227
AspLEI	GCGC	1 cut(s)	114
AspS9I	GGNCC	3 cut(s)	522, 751, 945
AsuHPI	GGTGA	4 cut(s)	493, 551, 1063, 1259
AsuII	TTCGAA	1 cut(s)	25
AvaII	GGWCC	2 cut(s)	522, 945
BaeGI	GKGCMC	1 cut(s)	286
BanI	GGYRCC	1 cut(s)	281
BarI	GAAGNNNNNNTAC	2 cut(s)	617, 649
BauI	CACGAG	2 cut(s)	61, 1588
Bbv12I	GWGCWC	1 cut(s)	1084
BbvI	GCAGC	2 cut(s)	50, 1870
BceAI	ACGGC	1 cut(s)	1542
BcgI	CGANNNNNNTGC	2 cut(s)	1631, 1665
BciT130I	CCWGG	2 cut(s)	1049, 1199
BclI	TGATCA	2 cut(s)	1170, 1953
BcoDI	GTCTC	4 cut(s)	10, 603, 1755, 2368
BfaI	CTAG	3 cut(s)	234, 729, 2384
BfoI	RGCGCY	1 cut(s)	115
BfrI	CTTAAG	1 cut(s)	2122
BfuAI	ACCTGC	2 cut(s)	486, 568
BisI	GCNGC	2 cut(s)	39, 1884
BlpI	GCTNAGC	1 cut(s)	1782
BlsI	GCNGC	2 cut(s)	40, 1885
Bme1390I	CCNGG	2 cut(s)	1049, 1199
Bme18I	GGWCC	2 cut(s)	522, 945
BmgT120I	GGNCC	3 cut(s)	522, 751, 945
BmiI	GGNNCC	2 cut(s)	283, 524
BmrFI	CCNGG	2 cut(s)	1049, 1199
BmrI	ACTGGG	2 cut(s)	646, 1718
BmuI	ACTGGG	2 cut(s)	646, 1718
BoxI	GACNNNNGTC	1 cut(s)	2039
Bpu1102I	GCTNAGC	1 cut(s)	1782
Bpu14I	TTCGAA	1 cut(s)	25
BpuEI	CTTGAG	3 cut(s)	133, 713, 890
BsaAI	YACGTR	1 cut(s)	1206
BsaBI	GATNNNNATC	2 cut(s)	1026, 2443
BsaI	GGTCTC	1 cut(s)	10
BsaJI	CCNNGG	3 cut(s)	721, 948, 1067
BsaWI	WCCGGW	1 cut(s)	29
BsaXI	ACNNNNNCTCC	4 cut(s)	923, 953, 2102, 2132
Bsc4I	CCNNNNNNNGG	6 cut(s)	759, 796, 954, 1073, 1126, 2458
Bse1I	ACTGG	2 cut(s)	641, 1724
Bse3DI	GCAATG	2 cut(s)	693, 1956
Bse8I	GATNNNNATC	2 cut(s)	1026, 2443
BseBI	CCWGG	2 cut(s)	1049, 1199
BseDI	CCNNGG	3 cut(s)	721, 948, 1067
BseJI	GATNNNNATC	2 cut(s)	1026, 2443
BseLI	CCNNNNNNNGG	6 cut(s)	759, 796, 954, 1073, 1126, 2458
BseMI	GCAATG	2 cut(s)	693, 1956
BseMII	CTCAG	4 cut(s)	61, 101, 614, 1927
BseNI	ACTGG	2 cut(s)	641, 1724
BseRI	GAGGAG	2 cut(s)	48, 1811
BseSI	GKGCMC	1 cut(s)	286
BseXI	GCAGC	2 cut(s)	50, 1870
Bsh1236I	CGCG	1 cut(s)	833
BshFI	GGCC	2 cut(s)	752, 1529
BshNI	GGYRCC	1 cut(s)	281
BsiHKAI	GWGCWC	1 cut(s)	1084
BsiSI	CCGG	1 cut(s)	30
BslFI	GGGAC	1 cut(s)	1166
BslI	CCNNNNNNNGG	6 cut(s)	759, 796, 954, 1073, 1126, 2458
BsmAI	GTCTC	4 cut(s)	10, 603, 1755, 2368
BsmFI	GGGAC	1 cut(s)	1166
BsnI	GGCC	2 cut(s)	752, 1529
Bso31I	GGTCTC	1 cut(s)	10
Bsp119I	TTCGAA	1 cut(s)	25
Bsp1286I	GDGCHC	2 cut(s)	286, 1084
Bsp1407I	TGTACA	1 cut(s)	1324
Bsp143I	GATC	6 cut(s)	1021, 1170, 1459, 1953, 2055, 2431
Bsp1720I	GCTNAGC	1 cut(s)	1782
BspACI	CCGC	6 cut(s)	260, 345, 655, 760, 815, 863
BspANI	GGCC	2 cut(s)	752, 1529
BspCNI	CTCAG	4 cut(s)	60, 100, 613, 1926
BspFNI	CGCG	1 cut(s)	833
BspHI	TCATGA	1 cut(s)	1549
BspLI	GGNNCC	2 cut(s)	283, 524
BspMI	ACCTGC	2 cut(s)	486, 568
BspPI	GGATC	1 cut(s)	1467
BspT104I	TTCGAA	1 cut(s)	25
BspT107I	GGYRCC	1 cut(s)	281
BspTI	CTTAAG	1 cut(s)	2122
BspTNI	GGTCTC	1 cut(s)	10
BsrBI	CCGCTC	1 cut(s)	815
BsrDI	GCAATG	2 cut(s)	693, 1956
BsrGI	TGTACA	1 cut(s)	1324
BsrI	ACTGG	2 cut(s)	641, 1724
BssECI	CCNNGG	3 cut(s)	721, 948, 1067
BssMI	GATC	6 cut(s)	1021, 1170, 1459, 1953, 2055, 2431
BssSI	CACGAG	2 cut(s)	61, 1588
BssT1I	CCWWGG	2 cut(s)	721, 948
Bst2BI	CACGAG	2 cut(s)	61, 1588
Bst2UI	CCWGG	2 cut(s)	1049, 1199
Bst4CI	ACNGT	8 cut(s)	133, 1001, 1108, 1316, 1516, 1687, 1846, 2424
Bst6I	CTCTTC	5 cut(s)	345, 430, 1127, 1275, 2366
BstAFI	CTTAAG	1 cut(s)	2122
BstAPI	GCANNNNNTGC	1 cut(s)	835
BstAUI	TGTACA	1 cut(s)	1324
BstBAI	YACGTR	1 cut(s)	1206
BstBI	TTCGAA	1 cut(s)	25
BstC8I	GCNNGC	3 cut(s)	817, 831, 1505
BstDEI	CTNAG	9 cut(s)	47, 87, 274, 509, 600, 711, 740, 1782, 1913
BstENI	CCTNNNNNAGG	2 cut(s)	952, 1124
BstFNI	CGCG	1 cut(s)	833
BstH2I	RGCGCY	1 cut(s)	115
BstHHI	GCGC	1 cut(s)	114
BstKTI	GATC	6 cut(s)	1024, 1173, 1462, 1956, 2058, 2434
BstMAI	GTCTC	4 cut(s)	10, 603, 1755, 2368
BstMBI	GATC	6 cut(s)	1021, 1170, 1459, 1953, 2055, 2431
BstMWI	GCNNNNNNNGC	3 cut(s)	661, 697, 835
BstNI	CCWGG	2 cut(s)	1049, 1199
BstNSI	RCATGY	3 cut(s)	1489, 1909, 2253
BstPAI	GACNNNNGTC	1 cut(s)	2039
BstSCI	CCNGG	2 cut(s)	1047, 1197
BstSLI	GKGCMC	1 cut(s)	286
BstUI	CGCG	1 cut(s)	833
BstV1I	GCAGC	2 cut(s)	50, 1870
BsuRI	GGCC	2 cut(s)	752, 1529
BtsI	GCAGTG	2 cut(s)	656, 1419
BtsIMutI	CAGTG	4 cut(s)	656, 1321, 1419, 1963
BveI	ACCTGC	2 cut(s)	486, 568
Cac8I	GCNNGC	3 cut(s)	817, 831, 1505
CciI	TCATGA	1 cut(s)	1549
CfoI	GCGC	1 cut(s)	114
Cfr13I	GGNCC	3 cut(s)	522, 751, 945
CseI	GACGC	2 cut(s)	1997, 2201
CsiI	ACCWGGT	1 cut(s)	1197
Csp6I	GTAC	4 cut(s)	91, 679, 1312, 1325
CspCI	CAANNNNNGTGG	2 cut(s)	1162, 1197
CviQI	GTAC	4 cut(s)	91, 679, 1312, 1325
DdeI	CTNAG	9 cut(s)	47, 87, 274, 509, 600, 711, 740, 1782, 1913
DpnI	GATC	6 cut(s)	1023, 1172, 1461, 1955, 2057, 2433
DpnII	GATC	6 cut(s)	1021, 1170, 1459, 1953, 2055, 2431
DraI	TTTAAA	1 cut(s)	2349
DraIII	CACNNNGTG	1 cut(s)	311
Eam1104I	CTCTTC	5 cut(s)	345, 430, 1127, 1275, 2366
EarI	CTCTTC	5 cut(s)	345, 430, 1127, 1275, 2366
EciI	GGCGGA	1 cut(s)	775
Eco130I	CCWWGG	2 cut(s)	721, 948
Eco31I	GGTCTC	1 cut(s)	10
Eco47I	GGWCC	2 cut(s)	522, 945
Eco57I	CTGAAG	4 cut(s)	587, 798, 1299, 1463
EcoNI	CCTNNNNNAGG	2 cut(s)	952, 1124
EcoO109I	RGGNCCY	1 cut(s)	945
EcoRI	GAATTC	1 cut(s)	397
EcoRII	CCWGG	2 cut(s)	1047, 1197
EcoT14I	CCWWGG	2 cut(s)	721, 948
EcoT22I	ATGCAT	3 cut(s)	1491, 1644, 2444
ErhI	CCWWGG	2 cut(s)	721, 948
FalI	AAGNNNNNCTT	4 cut(s)	604, 636, 852, 884
FaqI	GGGAC	1 cut(s)	1166
FauI	CCCGC	3 cut(s)	253, 808, 856
FbaI	TGATCA	2 cut(s)	1170, 1953
FblI	GTMKAC	1 cut(s)	1444
Fnu4HI	GCNGC	2 cut(s)	39, 1884
Fsp4HI	GCNGC	2 cut(s)	39, 1884
FspBI	CTAG	3 cut(s)	234, 729, 2384
GlaI	GCGC	1 cut(s)	113
GluI	GCNGC	2 cut(s)	39, 1884
HaeII	RGCGCY	1 cut(s)	115
HaeIII	GGCC	2 cut(s)	752, 1529
HapII	CCGG	1 cut(s)	30
HgaI	GACGC	2 cut(s)	1997, 2201
HhaI	GCGC	1 cut(s)	114
Hin6I	GCGC	1 cut(s)	112
HinP1I	GCGC	1 cut(s)	112
HincII	GTYRAC	2 cut(s)	846, 1445
HindII	GTYRAC	2 cut(s)	846, 1445
HindIII	AAGCTT	3 cut(s)	780, 962, 2165
HinfI	GANTC	7 cut(s)	68, 209, 427, 2035, 2287, 2332, 2338
HpaII	CCGG	1 cut(s)	30
HphI	GGTGA	4 cut(s)	493, 551, 1063, 1259
Hpy166II	GTNNAC	5 cut(s)	72, 679, 846, 1445, 1608
Hpy188III	TCNNGA	7 cut(s)	168, 413, 1085, 1550, 2232, 2342, 2459
Hpy8I	GTNNAC	5 cut(s)	72, 679, 846, 1445, 1608
HpyAV	CCTTC	8 cut(s)	437, 530, 779, 928, 1066, 1279, 2356, 2381
HpyCH4III	ACNGT	8 cut(s)	133, 1001, 1108, 1316, 1516, 1687, 1846, 2424
HpyCH4IV	ACGT	1 cut(s)	1205
HpyF10VI	GCNNNNNNNGC	3 cut(s)	661, 697, 835
HpyF3I	CTNAG	9 cut(s)	47, 87, 274, 509, 600, 711, 740, 1782, 1913
HpySE526I	ACGT	1 cut(s)	1205
HspAI	GCGC	1 cut(s)	112
Ksp22I	TGATCA	2 cut(s)	1170, 1953
Kzo9I	GATC	6 cut(s)	1021, 1170, 1459, 1953, 2055, 2431
LmnI	GCTCC	3 cut(s)	35, 1087, 2110
Lsp1109I	GCAGC	2 cut(s)	50, 1870
MabI	ACCWGGT	1 cut(s)	1197
MaeI	CTAG	3 cut(s)	234, 729, 2384
MaeII	ACGT	1 cut(s)	1205
MaeIII	GTNAC	6 cut(s)	1097, 1188, 1201, 1411, 1936, 2041
MalI	GATC	6 cut(s)	1023, 1172, 1461, 1955, 2057, 2433
MbiI	CCGCTC	1 cut(s)	815
MboI	GATC	6 cut(s)	1021, 1170, 1459, 1953, 2055, 2431
MfeI	CAATTG	1 cut(s)	1320
MhlI	GDGCHC	2 cut(s)	286, 1084
MluI	ACGCGT	1 cut(s)	831
MlyI	GAGTC	2 cut(s)	77, 2029
MmeI	TCCRAC	3 cut(s)	909, 1328, 1437
Mph1103I	ATGCAT	3 cut(s)	1491, 1644, 2444
MroXI	GAANNNNTTC	2 cut(s)	783, 2227
MslI	CAYNNNNRTG	3 cut(s)	1242, 1494, 1929
MspCI	CTTAAG	1 cut(s)	2122
MspI	CCGG	1 cut(s)	30
MspR9I	CCNGG	2 cut(s)	1049, 1199
MunI	CAATTG	1 cut(s)	1320
MvaI	CCWGG	2 cut(s)	1049, 1199
MvnI	CGCG	1 cut(s)	833
MwoI	GCNNNNNNNGC	3 cut(s)	661, 697, 835
NdeII	GATC	6 cut(s)	1021, 1170, 1459, 1953, 2055, 2431
NlaIV	GGNNCC	2 cut(s)	283, 524
NmeAIII	GCCGAG	2 cut(s)	22, 1092
NmuCI	GTSAC	2 cut(s)	1201, 2041
NsiI	ATGCAT	3 cut(s)	1491, 1644, 2444
NspI	RCATGY	3 cut(s)	1489, 1909, 2253
NspV	TTCGAA	1 cut(s)	25
PagI	TCATGA	1 cut(s)	1549
PciI	ACATGT	1 cut(s)	1905
PdmI	GAANNNNTTC	2 cut(s)	783, 2227
PfeI	GAWTC	5 cut(s)	209, 427, 2287, 2332, 2338
PflFI	GACNNNGTC	1 cut(s)	1199
PflMI	CCANNNNNTGG	1 cut(s)	796
PkrI	GCNGC	2 cut(s)	40, 1885
PleI	GAGTC	2 cut(s)	76, 2029
PpsI	GAGTC	2 cut(s)	76, 2029
Ppu21I	YACGTR	1 cut(s)	1206
PpuMI	RGGWCCY	1 cut(s)	945
PscI	ACATGT	1 cut(s)	1905
PshAI	GACNNNNGTC	1 cut(s)	2039
PshBI	ATTAAT	1 cut(s)	1734
Psp5II	RGGWCCY	1 cut(s)	945
Psp6I	CCWGG	2 cut(s)	1047, 1197
PspGI	CCWGG	2 cut(s)	1047, 1197
PspN4I	GGNNCC	2 cut(s)	283, 524
PspPI	GGNCC	3 cut(s)	522, 751, 945
PspPPI	RGGWCCY	1 cut(s)	945
PsyI	GACNNNGTC	1 cut(s)	1199
RsaI	GTAC	4 cut(s)	92, 680, 1313, 1326
RsaNI	GTAC	4 cut(s)	91, 679, 1312, 1325
RseI	CAYNNNNRTG	3 cut(s)	1242, 1494, 1929
SalI	GTCGAC	1 cut(s)	1443
SatI	GCNGC	2 cut(s)	39, 1884
Sau3AI	GATC	6 cut(s)	1021, 1170, 1459, 1953, 2055, 2431
Sau96I	GGNCC	3 cut(s)	522, 751, 945
SchI	GAGTC	2 cut(s)	77, 2029
ScrFI	CCNGG	2 cut(s)	1049, 1199
SduI	GDGCHC	2 cut(s)	286, 1084
SexAI	ACCWGGT	1 cut(s)	1197
SfuI	TTCGAA	1 cut(s)	25
SinI	GGWCC	2 cut(s)	522, 945
SmiMI	CAYNNNNRTG	3 cut(s)	1242, 1494, 1929
SmlI	CTYRAG	4 cut(s)	148, 692, 869, 2122
SmoI	CTYRAG	4 cut(s)	148, 692, 869, 2122
SsiI	CCGC	6 cut(s)	260, 345, 655, 760, 815, 863
SspMI	CTAG	3 cut(s)	234, 729, 2384
StyD4I	CCNGG	2 cut(s)	1047, 1197
StyI	CCWWGG	2 cut(s)	721, 948
TaaI	ACNGT	8 cut(s)	133, 1001, 1108, 1316, 1516, 1687, 1846, 2424
TaiI	ACGT	1 cut(s)	1208
TaqI	TCGA	7 cut(s)	25, 250, 811, 1444, 2187, 2317, 2369
TatI	WGTACW	2 cut(s)	678, 1324
TfiI	GAWTC	5 cut(s)	209, 427, 2287, 2332, 2338
TscAI	CASTG	4 cut(s)	656, 1321, 1426, 1963
TseFI	GTSAC	2 cut(s)	1201, 2041
TseI	GCWGC	2 cut(s)	38, 1883
Tsp45I	GTSAC	2 cut(s)	1201, 2041
TspDTI	ATGAA	9 cut(s)	477, 624, 974, 1074, 1320, 1598, 1780, 1841, 2021
TspRI	CASTG	4 cut(s)	656, 1321, 1426, 1963
Tth111I	GACNNNGTC	1 cut(s)	1199
Van91I	CCANNNNNTGG	1 cut(s)	796
Vha464I	CTTAAG	1 cut(s)	2122
VpaK11BI	GGWCC	2 cut(s)	522, 945
VspI	ATTAAT	1 cut(s)	1734
XagI	CCTNNNNNAGG	2 cut(s)	952, 1124
XapI	RAATTY	2 cut(s)	397, 1262
XceI	RCATGY	3 cut(s)	1489, 1909, 2253
XmiI	GTMKAC	1 cut(s)	1444
XmnI	GAANNNNTTC	2 cut(s)	783, 2227
XspI	CTAG	3 cut(s)	234, 729, 2384
Zsp2I	ATGCAT	3 cut(s)	1491, 1644, 2444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.