Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0002968

Physical Location & Seq

Genomic Coordinates Forward (+)

35162604 .. 35166569

Gene Structure 3966 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G025970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2322 bp

ATGCAACCAGAGACCATGGCTTCCGGTGGGGATAACATCTCTGTTACTAAAGGCGTTGTTTCTAGGGTTGAACCTACACAATATGTTCACGGTGCAACCCAGCTTATGGCAATACAGATTGATGCAGCAATAAATCCCAGGAATAGTGGTAGCCCAGCAATCATGGGAAATAAAGTTGATGGTGTTGCTTTCCAAAACCTTTCTGGTGCAGAGAATATTGGTTATATAATTCCTGTTCCTGTAATAAAGCATTTTATTGCTGGAGTTGAAGAAAGAGGTAAATATTATGGAGATGGAGATGAAGATGAATATAGAGACCCTTTGGTGAGAGAGGTTTGTAGGTTAATTGAGCTTAGAACAGCTTGGACCCCAAAGTTTGAAGGTGAATTAAGGCACTTGTTACGAAGCTTGAAGCCAAAGCAGGTTTGTGCTGTTTTGAAGTCTCAGGCTGATGAAAGAGTTGCTTTGGAGGTTTTCTACTGGGCTGATAGGCAGTGGAGGTATAAGCATGACCCAATTGTGTACTATGCAATGCTTGAGGTGCTTAGTAAGACCAAGTTGTGCCAAGGTGCTAGGAGGATTCTTAGGTTAATGGCCCGTAGGCGGATTGAGCTTCGTTCTGAAGCTTTTGGTCATGTGATGGTGTCATATAGTCGAGCGGGCAAGTTAAGACATGCGTTGCGTGTGTTGACTTTGATGCAGAAAGCGGGGCTTGAGCTTGATTTGTCAATGTGTAATACTGCAATTTATGTTTTGGTGAAAGGTAATAAGTTAGAGAAGGCGTTGAGGACCTTGGAAAGGATGAAGCTTGTTGGGATTGCACCAAATGTTGTCACTTATAACTGTTTGATAAAGGGGTATTGTGATTTGCATCGTGTAGAAGATGCAATCCAGGTGATTGATGAAATGCCGATGAAGGGGTGTGCTCCTGATAAAGTTAGTTATTATACTGTCATGAATTTCCTTTGTAAGGAGAAGAGGGTCAAAGAAGTGAGGGACTTGATGGAGAAGATGATCAAGGATGGTGAGTTGTTACCAGACCAGGTCACTTATAGTAATCTTGTCCATGTGCTTTGTAAGCACGGCTATGGTGATGAGGCACTTGAATTTTTAAGGGAAGCCGAAGAGAGGGGATTTCGGTTTGATAAGGTTGGGTATAGTGCAATTGTACATTCATTTTGTAAGGATGGTAGGATTGACATGGCAAAAGAAATTGTTAGTGAAATGTTCTCAAAAGGTTGCACACCAGATGTTGTTACATACACTACTGTTCTGAATGGGCATTGTCGACTTGGGAAGGTGGATCAAGCTAAAAAGATGCTTCAGCACATGTATAAGCATGGGTGCAAGCCAAATACTGTATCATATACGGCCATAATAAATGGGCTTTGTCATGGTGGGAACTTATTGGAGGCAAGGGAGATGATGAACATGAGTGAGGAAGAATGGTGGACACCAAATGCCATCACTTACAGTGTTCTGATGCATGGGTTCCGGAGGGAAGGGAAATTGGTTGAGGCTTGTGATATTGTCAAACAGATGATTAAAAAGGGACTTTTTCCTACCCCAATTGAAATTAATCTCTTAATTCAGTCTCTTTGCCAAGAGGGGAAGATGGATGAGGCTAAACATTTCATGGAGGAGTGTTTAAACAAAGGTTGTGCTGTTAATGTTGTCAATTTTACTACTGTTATTCATGGTTATTGTCAAAAAGATGACTTGGAAGCTGCTCTGTCATTGCTTGATGACATGTATCTCAGCAACAAACACGCAGATGCAGTAACTTATACAGCAGTGATCAATGCATTGGGAAAGAAGGGTAGAATACAAGAGGCAACAGAACTTATGATGAAGATGCTGGGTAAGGGTATTGACCCAACTCCCGTCACATACAGGACGATCATCCACTGGTATTGTAAGATGAATAGGGTGGATGATTTGTTAAAATTATTGGAGAAGATGTTCTTGAGGCAACGTTGCAAAACAACATATAATCAAGTGATTGAGAAGCTTTGTAGTTTTGGGAACTTTGAGGCTGCTGATAAACTATTGGGTAAGGTGTTGAGAACAGCTTCAAGAGTTGATGCTAAAACATGCCATGTTGTTATGGATGGTTATTTGAGAAAAGAGGTTCCTCTATTAGCATACAAAGTGGCTTGTCGAATGTTCAATCGGAATCTGATTCCTGATTTAAAGTTGTGTCAGAAGGTGACCAAGAGATTGATGCTAGAAGGATACTCCAAAGAGGCAGACAACCTTATGTTACGGTTTGTTGAGCGTGGATGCATATCAAACCAACTTCAGGAACATCTGGAAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

773

Amino Acids

88.0

Weight (kDa)

8.74

Isoelectric Point (pI)

30.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	184 - 269	2.7e-06	Fungal tetratrico peptide repeats
PPR_long	PF17177	210 - 373	3.6e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	229 - 287	4.5e-12	Pentatricopeptide repeat domain
PPR_2	PF13041	244 - 289	3e-11	PPR repeat family
PPR_1	PF12854	272 - 303	1.1e-11	PPR repeat
PPR_2	PF13041	275 - 324	4.2e-16	PPR repeat family
PPR	PF01535	278 - 308	4.7e-07	PPR repeat
PPR_1	PF12854	344 - 373	4.4e-07	PPR repeat
PPR_2	PF13041	346 - 395	1.4e-08	PPR repeat family
PPR	PF01535	349 - 379	9.5e-06	PPR repeat
PPR_long	PF17177	371 - 500	2.7e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	371 - 426	1.8e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	377 - 409	3.3e-06	PPR repeat
PPR_2	PF13041	383 - 430	6e-14	PPR repeat family
PPR_3	PF13812	405 - 461	6.7e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	412 - 444	1.6e-12	PPR repeat
PPR_2	PF13041	416 - 465	9.4e-19	PPR repeat family
PPR	PF01535	419 - 449	1.9e-06	PPR repeat
PPR_1	PF12854	447 - 477	2.7e-08	PPR repeat
TPR_24	PF23276	489 - 581	6.9e-06	Fungal tetratrico peptide repeats
PPR_1	PF12854	552 - 584	4.1e-08	PPR repeat
PPR_2	PF13041	557 - 603	2.8e-11	PPR repeat family
PPR_3	PF13812	579 - 640	1.5e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	592 - 636	4.5e-11	PPR repeat family
PPR	PF01535	594 - 624	9.7e-07	PPR repeat
PPR_1	PF12854	622 - 654	9.2e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30290 AT1G30290
fragaria_vesca	FvH4_3g05050 FvH4_3g05050 FvH4_3g05050 FvH4_3g05050 FvH4_3g05050 FvH4_3g05050 FvH4_3g05050 FvH4_3g05050
malus_domestica	MD10G1258300.v1.1
prunus_persica	Prupe.4G085500_v2.0.a1 Prupe.4G085500_v2.0.a1
pyrus_communis	pycom05g26000 pycom10g21460
rosa_chinensis	RchiOBHm_Chr3g0490541 RchiOBHm_Chr3g0490551 RchiOBHm_Chr5g0014911
rosa_laevigata	RLG00000022885 RLG00000032150
rosa_multiflora	Rmu_sc0003862.1_g000007 Rmu_sc0013610.1_g000002
rosa_roxburghii	Rroxscaffold_1G00061660 Rroxscaffold_6G00393420
rosa_rugosa	Rorug03G0243900 Rorug05G0021400
rosa_samantha	Rh3AG293300 Rh3AG293400 Rh3BG329800 Rh3CG327300 Rh3CG327400 Rh3DG326700 Rh5AG117100 Rh5BG114100 Rh5CG125600 Rh5DG113500
rosa_wichuraiana	Rw3G025970 Rw5G010080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	840
Acc36I	ACCTGC	1 cut(s)	412
AccB7I	CCANNNNNTGG	1 cut(s)	106
AccBSI	CCGCTC	1 cut(s)	659
AccI	GTMKAC	1 cut(s)	1288
AccIII	TCCGGA	1 cut(s)	1494
AciI	CCGC	3 cut(s)	604, 659, 707
AclI	AACGTT	1 cut(s)	1975
AclWI	GGATC	1 cut(s)	1311
AcoI	YGGCCR	1 cut(s)	1371
AcsI	RAATTY	2 cut(s)	958, 1106
AcuI	CTGAAG	3 cut(s)	642, 1307, 2285
AfaI	GTAC	2 cut(s)	524, 1170
AfiI	CCNNNNNNNGG	7 cut(s)	106, 603, 798, 917, 970, 1128, 2302
AflIII	ACRYGT	2 cut(s)	1329, 1749
AgsI	TTSAA	9 cut(s)	71, 269, 380, 412, 439, 1106, 1574, 2076, 2170
AjnI	CCWGG	3 cut(s)	137, 891, 1041
AloI	GAACNNNNNNTCC	2 cut(s)	1946, 1978
Alw21I	GWGCWC	1 cut(s)	928
Alw26I	GTCTC	4 cut(s)	5, 309, 447, 1599
AlwI	GGATC	1 cut(s)	1311
Aor13HI	TCCGGA	1 cut(s)	1494
AoxI	GGCC	2 cut(s)	594, 1371
ApeKI	GCWGC	3 cut(s)	125, 1727, 2036
ApoI	RAATTY	2 cut(s)	958, 1106
AseI	ATTAAT	1 cut(s)	1578
Asp700I	GAANNNNTTC	2 cut(s)	1961, 2071
AspS9I	GGNCC	3 cut(s)	366, 595, 789
AsuHPI	GGTGA	7 cut(s)	337, 395, 769, 907, 1037, 1103, 2221
AvaII	GGWCC	2 cut(s)	366, 789
Bbv12I	GWGCWC	1 cut(s)	928
BbvI	GCAGC	3 cut(s)	137, 1714, 2023
BccI	CCATC	9 cut(s)	173, 287, 634, 997, 1016, 1181, 1472, 1609, 2105
BceAI	ACGGC	2 cut(s)	1099, 1386
BciT130I	CCWGG	3 cut(s)	139, 893, 1043
BciVI	GTATCC	1 cut(s)	2228
BclI	TGATCA	2 cut(s)	1014, 1797
BcoDI	GTCTC	4 cut(s)	5, 309, 447, 1599
BfaI	CTAG	4 cut(s)	63, 573, 2228, 2320
BfuAI	ACCTGC	1 cut(s)	412
BfuI	GTATCC	1 cut(s)	2228
BisI	GCNGC	3 cut(s)	126, 1728, 2037
BlsI	GCNGC	3 cut(s)	127, 1729, 2038
Bme1390I	CCNGG	3 cut(s)	139, 893, 1043
Bme18I	GGWCC	2 cut(s)	366, 789
BmgT120I	GGNCC	3 cut(s)	366, 595, 789
BmiI	GGNNCC	3 cut(s)	368, 1493, 2133
BmrFI	CCNGG	3 cut(s)	139, 893, 1043
BmrI	ACTGGG	1 cut(s)	490
BmuI	ACTGGG	1 cut(s)	490
BpmI	CTGGAG	1 cut(s)	282
BpuEI	CTTGAG	3 cut(s)	557, 734, 1987
BsaBI	GATNNNNATC	2 cut(s)	870, 2287
BsaI	GGTCTC	2 cut(s)	5, 309
BsaJI	CCNNGG	4 cut(s)	15, 137, 565, 792
BsaWI	WCCGGW	2 cut(s)	23, 1494
BsaXI	ACNNNNNCTCC	2 cut(s)	1946, 1976
Bsc4I	CCNNNNNNNGG	7 cut(s)	106, 603, 798, 917, 970, 1128, 2302
Bse1I	ACTGG	2 cut(s)	485, 1913
Bse3DI	GCAATG	2 cut(s)	537, 1736
Bse8I	GATNNNNATC	2 cut(s)	870, 2287
BseAI	TCCGGA	1 cut(s)	1494
BseBI	CCWGG	3 cut(s)	139, 893, 1043
BseDI	CCNNGG	4 cut(s)	15, 137, 565, 792
BseGI	GGATG	8 cut(s)	807, 1027, 1192, 1624, 1902, 1939, 2116, 2288
BseJI	GATNNNNATC	2 cut(s)	870, 2287
BseLI	CCNNNNNNNGG	7 cut(s)	106, 603, 798, 917, 970, 1128, 2302
BseMI	GCAATG	2 cut(s)	537, 1736
BseMII	CTCAG	2 cut(s)	458, 1771
BseNI	ACTGG	2 cut(s)	485, 1913
BseRI	GAGGAG	1 cut(s)	1655
BseXI	GCAGC	3 cut(s)	137, 1714, 2023
BseYI	CCCAGC	3 cut(s)	99, 154, 1858
BsgI	GTGCAG	1 cut(s)	228
BshFI	GGCC	2 cut(s)	596, 1373
BsiHKAI	GWGCWC	1 cut(s)	928
BsiSI	CCGG	2 cut(s)	24, 1495
BslFI	GGGAC	2 cut(s)	1010, 1566
BslI	CCNNNNNNNGG	7 cut(s)	106, 603, 798, 917, 970, 1128, 2302
BsmAI	GTCTC	4 cut(s)	5, 309, 447, 1599
BsmFI	GGGAC	2 cut(s)	1010, 1566
BsnI	GGCC	2 cut(s)	596, 1373
Bso31I	GGTCTC	2 cut(s)	5, 309
Bsp1286I	GDGCHC	1 cut(s)	928
Bsp13I	TCCGGA	1 cut(s)	1494
Bsp1407I	TGTACA	1 cut(s)	1168
Bsp143I	GATC	4 cut(s)	1014, 1303, 1797, 1899
Bsp19I	CCATGG	1 cut(s)	15
BspACI	CCGC	3 cut(s)	604, 659, 707
BspANI	GGCC	2 cut(s)	596, 1373
BspCNI	CTCAG	2 cut(s)	457, 1770
BspEI	TCCGGA	1 cut(s)	1494
BspHI	TCATGA	1 cut(s)	954
BspLI	GGNNCC	3 cut(s)	368, 1493, 2133
BspMI	ACCTGC	1 cut(s)	412
BspPI	GGATC	1 cut(s)	1311
BspTNI	GGTCTC	2 cut(s)	5, 309
BsrBI	CCGCTC	1 cut(s)	659
BsrDI	GCAATG	2 cut(s)	537, 1736
BsrGI	TGTACA	1 cut(s)	1168
BsrI	ACTGG	2 cut(s)	485, 1913
BssECI	CCNNGG	4 cut(s)	15, 137, 565, 792
BssMI	GATC	4 cut(s)	1014, 1303, 1797, 1899
BssT1I	CCWWGG	3 cut(s)	15, 565, 792
Bst2UI	CCWGG	3 cut(s)	139, 893, 1043
Bst4CI	ACNGT	8 cut(s)	92, 845, 952, 1270, 1360, 1475, 1690, 2268
Bst6I	CTCTTC	2 cut(s)	971, 1119
BstAUI	TGTACA	1 cut(s)	1168
BstC8I	GCNNGC	2 cut(s)	661, 1349
BstDEI	CTNAG	5 cut(s)	353, 444, 545, 584, 1757
BstDSI	CCRYGG	1 cut(s)	15
BstEII	GGTNACC	1 cut(s)	2209
BstENI	CCTNNNNNAGG	2 cut(s)	796, 968
BstF5I	GGATG	8 cut(s)	807, 1027, 1192, 1624, 1902, 1939, 2116, 2288
BstKTI	GATC	4 cut(s)	1017, 1306, 1800, 1902
BstMAI	GTCTC	4 cut(s)	5, 309, 447, 1599
BstMBI	GATC	4 cut(s)	1014, 1303, 1797, 1899
BstMWI	GCNNNNNNNGC	3 cut(s)	541, 610, 1078
BstNI	CCWGG	3 cut(s)	139, 893, 1043
BstNSI	RCATGY	4 cut(s)	677, 1333, 1753, 2097
BstPI	GGTNACC	1 cut(s)	2209
BstSCI	CCNGG	3 cut(s)	137, 891, 1041
BstV1I	GCAGC	3 cut(s)	137, 1714, 2023
BsuI	GTATCC	1 cut(s)	2228
BsuRI	GGCC	2 cut(s)	596, 1373
BtgI	CCRYGG	1 cut(s)	15
BtsCI	GGATG	8 cut(s)	807, 1027, 1192, 1624, 1902, 1939, 2116, 2288
BtsI	GCAGTG	2 cut(s)	500, 1800
BtsIMutI	CAGTG	4 cut(s)	500, 1480, 1800, 1906
BveI	ACCTGC	1 cut(s)	412
Cac8I	GCNNGC	2 cut(s)	661, 1349
CciI	TCATGA	1 cut(s)	954
Cfr13I	GGNCC	3 cut(s)	366, 595, 789
CsiI	ACCWGGT	1 cut(s)	1041
Csp6I	GTAC	2 cut(s)	523, 1169
CspCI	CAANNNNNGTGG	2 cut(s)	1895, 1930
CviQI	GTAC	2 cut(s)	523, 1169
DdeI	CTNAG	5 cut(s)	353, 444, 545, 584, 1757
DpnI	GATC	4 cut(s)	1016, 1305, 1799, 1901
DpnII	GATC	4 cut(s)	1014, 1303, 1797, 1899
DraI	TTTAAA	2 cut(s)	1650, 2193
EaeI	YGGCCR	1 cut(s)	1371
Eam1104I	CTCTTC	2 cut(s)	971, 1119
EarI	CTCTTC	2 cut(s)	971, 1119
EciI	GGCGGA	1 cut(s)	619
Eco130I	CCWWGG	3 cut(s)	15, 565, 792
Eco31I	GGTCTC	2 cut(s)	5, 309
Eco47I	GGWCC	2 cut(s)	366, 789
Eco57I	CTGAAG	3 cut(s)	642, 1307, 2285
Eco91I	GGTNACC	1 cut(s)	2209
EcoNI	CCTNNNNNAGG	2 cut(s)	796, 968
EcoO109I	RGGNCCY	1 cut(s)	789
EcoO65I	GGTNACC	1 cut(s)	2209
EcoRII	CCWGG	3 cut(s)	137, 891, 1041
EcoT14I	CCWWGG	3 cut(s)	15, 565, 792
EcoT22I	ATGCAT	3 cut(s)	1488, 1807, 2288
ErhI	CCWWGG	3 cut(s)	15, 565, 792
FalI	AAGNNNNNCTT	6 cut(s)	448, 480, 696, 728, 1949, 1981
FaqI	GGGAC	2 cut(s)	1010, 1566
FauI	CCCGC	2 cut(s)	652, 700
FbaI	TGATCA	2 cut(s)	1014, 1797
FblI	GTMKAC	1 cut(s)	1288
Fnu4HI	GCNGC	3 cut(s)	126, 1728, 2037
FokI	GGATG	8 cut(s)	814, 1034, 1199, 1631, 1889, 1946, 2123, 2295
Fsp4HI	GCNGC	3 cut(s)	126, 1728, 2037
FspBI	CTAG	4 cut(s)	63, 573, 2228, 2320
GluI	GCNGC	3 cut(s)	126, 1728, 2037
GsaI	CCCAGC	3 cut(s)	103, 158, 1862
GsuI	CTGGAG	1 cut(s)	282
HaeIII	GGCC	2 cut(s)	596, 1373
HapII	CCGG	2 cut(s)	24, 1495
HincII	GTYRAC	2 cut(s)	690, 1289
HindII	GTYRAC	2 cut(s)	690, 1289
HindIII	AAGCTT	4 cut(s)	406, 624, 806, 2009
HinfI	GANTC	3 cut(s)	580, 2176, 2182
HpaII	CCGG	2 cut(s)	24, 1495
HphI	GGTGA	7 cut(s)	337, 395, 769, 907, 1037, 1103, 2221
Hpy166II	GTNNAC	5 cut(s)	88, 523, 690, 1289, 1452
Hpy188I	TCNGA	6 cut(s)	622, 1275, 1482, 2175, 2181, 2205
Hpy188III	TCNNGA	8 cut(s)	929, 955, 1495, 1966, 2076, 2186, 2303, 2312
Hpy8I	GTNNAC	5 cut(s)	88, 523, 690, 1289, 1452
HpyAV	CCTTC	8 cut(s)	374, 772, 910, 1291, 1496, 1810, 2200, 2225
HpyCH4III	ACNGT	8 cut(s)	92, 845, 952, 1270, 1360, 1475, 1690, 2268
HpyCH4IV	ACGT	1 cut(s)	1975
HpyF10VI	GCNNNNNNNGC	3 cut(s)	541, 610, 1078
HpyF3I	CTNAG	5 cut(s)	353, 444, 545, 584, 1757
HpySE526I	ACGT	1 cut(s)	1975
Kpn2I	TCCGGA	1 cut(s)	1494
Ksp22I	TGATCA	2 cut(s)	1014, 1797
Kzo9I	GATC	4 cut(s)	1014, 1303, 1797, 1899
LmnI	GCTCC	1 cut(s)	931
Lsp1109I	GCAGC	3 cut(s)	137, 1714, 2023
MabI	ACCWGGT	1 cut(s)	1041
MaeI	CTAG	4 cut(s)	63, 573, 2228, 2320
MaeII	ACGT	1 cut(s)	1975
MalI	GATC	4 cut(s)	1016, 1305, 1799, 1901
MbiI	CCGCTC	1 cut(s)	659
MboI	GATC	4 cut(s)	1014, 1303, 1797, 1899
MfeI	CAATTG	3 cut(s)	516, 1164, 1569
MhlI	GDGCHC	1 cut(s)	928
Mph1103I	ATGCAT	3 cut(s)	1488, 1807, 2288
MroI	TCCGGA	1 cut(s)	1494
MroXI	GAANNNNTTC	2 cut(s)	1961, 2071
MslI	CAYNNNNRTG	2 cut(s)	1086, 1773
MspI	CCGG	2 cut(s)	24, 1495
MspR9I	CCNGG	3 cut(s)	139, 893, 1043
MssI	GTTTAAAC	1 cut(s)	1650
MunI	CAATTG	3 cut(s)	516, 1164, 1569
MvaI	CCWGG	3 cut(s)	139, 893, 1043
MwoI	GCNNNNNNNGC	3 cut(s)	541, 610, 1078
NcoI	CCATGG	1 cut(s)	15
NdeII	GATC	4 cut(s)	1014, 1303, 1797, 1899
NlaIV	GGNNCC	3 cut(s)	368, 1493, 2133
NmuCI	GTSAC	4 cut(s)	832, 1045, 1885, 2209
NsiI	ATGCAT	3 cut(s)	1488, 1807, 2288
NspI	RCATGY	4 cut(s)	677, 1333, 1753, 2097
PagI	TCATGA	1 cut(s)	954
PciI	ACATGT	2 cut(s)	1329, 1749
PdmI	GAANNNNTTC	2 cut(s)	1961, 2071
PfeI	GAWTC	3 cut(s)	580, 2176, 2182
PflFI	GACNNNGTC	1 cut(s)	1043
PflMI	CCANNNNNTGG	1 cut(s)	106
PkrI	GCNGC	3 cut(s)	127, 1729, 2038
PmeI	GTTTAAAC	1 cut(s)	1650
PpuMI	RGGWCCY	1 cut(s)	789
PscI	ACATGT	2 cut(s)	1329, 1749
PshBI	ATTAAT	1 cut(s)	1578
PsiI	TTATAA	1 cut(s)	840
Psp1406I	AACGTT	1 cut(s)	1975
Psp5II	RGGWCCY	1 cut(s)	789
Psp6I	CCWGG	3 cut(s)	137, 891, 1041
PspEI	GGTNACC	1 cut(s)	2209
PspFI	CCCAGC	3 cut(s)	99, 154, 1858
PspGI	CCWGG	3 cut(s)	137, 891, 1041
PspN4I	GGNNCC	3 cut(s)	368, 1493, 2133
PspPI	GGNCC	3 cut(s)	366, 595, 789
PspPPI	RGGWCCY	1 cut(s)	789
PsyI	GACNNNGTC	1 cut(s)	1043
RsaI	GTAC	2 cut(s)	524, 1170
RsaNI	GTAC	2 cut(s)	523, 1169
RseI	CAYNNNNRTG	2 cut(s)	1086, 1773
SalI	GTCGAC	1 cut(s)	1287
SatI	GCNGC	3 cut(s)	126, 1728, 2037
Sau3AI	GATC	4 cut(s)	1014, 1303, 1797, 1899
Sau96I	GGNCC	3 cut(s)	366, 595, 789
ScrFI	CCNGG	3 cut(s)	139, 893, 1043
SduI	GDGCHC	1 cut(s)	928
SexAI	ACCWGGT	1 cut(s)	1041
SinI	GGWCC	2 cut(s)	366, 789
SmiMI	CAYNNNNRTG	2 cut(s)	1086, 1773
SmlI	CTYRAG	3 cut(s)	536, 713, 1966
SmoI	CTYRAG	3 cut(s)	536, 713, 1966
SsiI	CCGC	3 cut(s)	604, 659, 707
SspI	AATATT	2 cut(s)	217, 284
SspMI	CTAG	4 cut(s)	63, 573, 2228, 2320
StyD4I	CCNGG	3 cut(s)	137, 891, 1041
StyI	CCWWGG	3 cut(s)	15, 565, 792
TaaI	ACNGT	8 cut(s)	92, 845, 952, 1270, 1360, 1475, 1690, 2268
TaiI	ACGT	1 cut(s)	1978
TaqI	TCGA	3 cut(s)	655, 1288, 2161
TatI	WGTACW	2 cut(s)	522, 1168
TfiI	GAWTC	3 cut(s)	580, 2176, 2182
TscAI	CASTG	4 cut(s)	500, 1480, 1800, 1913
TseFI	GTSAC	4 cut(s)	832, 1045, 1885, 2209
TseI	GCWGC	3 cut(s)	125, 1727, 2036
Tsp45I	GTSAC	4 cut(s)	832, 1045, 1885, 2209
TspRI	CASTG	4 cut(s)	500, 1480, 1800, 1913
Tth111I	GACNNNGTC	1 cut(s)	1043
Van91I	CCANNNNNTGG	1 cut(s)	106
VpaK11BI	GGWCC	2 cut(s)	366, 789
VspI	ATTAAT	1 cut(s)	1578
XagI	CCTNNNNNAGG	2 cut(s)	796, 968
XapI	RAATTY	2 cut(s)	958, 1106
XceI	RCATGY	4 cut(s)	677, 1333, 1753, 2097
XcmI	CCANNNNNNNNNTGG	1 cut(s)	200
XmiI	GTMKAC	1 cut(s)	1288
XmnI	GAANNNNTTC	2 cut(s)	1961, 2071
XspI	CTAG	4 cut(s)	63, 573, 2228, 2320
Zsp2I	ATGCAT	3 cut(s)	1488, 1807, 2288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.