Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0001625

Physical Location & Seq

Genomic Coordinates Reverse (-)

2337221 .. 2341731

Gene Structure 4511 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGAAAGGTTGTCAGAGGGTGCATTGGAAAGGTTATGGTAGCAGTGAAGATACATGGGAACCAATTGAAGGCTTAAGGTATACCACTTCTTATGATATGATTATGAATATTAACTGCCAAGAAAGTATACAAGATTTTGTAAGAAATGGGAGGAAAGTGAAAATTTTGCCACTTCCAGGAGATGTTGATGTAATATGCGGGGGCCCTCCTTGCCAAGGAATTAGTGGCTATAATCGCTATAGAAACGTTGATTCTCCATTGGATGATGAGAGGAATCATCAAATTGTAGTCTTCATGGATATTGTAAACTTCTTGAAGCCAAAGTTTGTGCTGATGGAAAATGTTGTTGACATTTTGAGATTTGACAAAGCTTCTCTGGGAAGATATGCACTTAGTCGTTTGGTGCATATGAAGTACCAAGCGAGGCTGGGAATACTTGCTGCTGGTTGTTATGGCCTTCCTCAATTTCGGTTGCGTGTTTTCTTGTGGGGTGCTCATGCTTGTGAGGCCAAAAGAGCCAGACGTATTTTCCCCTCTTTTTTATCTTCGCAGAATCTGCCACAGTTTCCTCTTCCAACACATGATGTCATAATGAGATACTGGCCTCCACCAGAGTTCGAGCGGAACACTGTTGCTTACGATGAAGAACAACCTCGTGAATTATTAGAAAAAGCTCTTGTTCTTCGTGATGCCATCTCGGATCTTCCTTCTGTCTCAAATGATGAAAAAAGAGAAGAAATGCCATTCCAAAAGCCTCCTGAAACAGATTTCCAAAGATATATAAGGTCAACACAGCATGAGATGATGGGATCTGCGTTTGATGGTACTACGAAAGCAAAAGTTTCACTTTATGACCGTCGGACTTACCACTTATACGAAGATGATTACTTACGAGTTTGTCAGATTCCAAAAAGAAAGGGAGAAAATTTCCGGGATCTACCTGGTGTTGTTGTAGGAAGTGACAATGTGGCTCGGAGAGAGTCAACTGAAAAGCATTCTCTGTTGCCATCTGGAAGGCCATTAGTGATTATCGTTGATTGTCTTATTTCTTTGGGCAGGTATTGTCAGATTGGAAATGCAGTTCCAGTTTCGGTTGCACGAGCTTTAGGATATGCGTTGGGATTGGCAGTTCGAAAACTCAGCGGAAATGATCCACTCATGACTCTCCCCAATAAGTTTTCTCATTCAAACTTCTTCCAATTCACAAAAAAATTGCCTCTCGAGACCGAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003886 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009008 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010426 GO:0016740 GO:0016741 GO:0032259 GO:0032776 GO:0033554 GO:0034605 GO:0034641 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090116 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko05206 map00270 map01100 map05206

Pfam Domains

Protein Families

BAH Chromo DNA_methylase

Protein Analysis

412

Amino Acids

47.1

Weight (kDa)

8.6

Isoelectric Point (pI)

41.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_methylase	PF00145	50 - 373	1.9e-23	C-5 cytosine-specific DNA methylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80740 AT4G19020 AT4G19020
fragaria_vesca	FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610
malus_domestica	MD06G1022700.v1.1
prunus_persica	Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1
pyrus_communis	pycom06g01820 pycom06g01830 pycom06g01850 pycom06g01860
rosa_chinensis	RchiOBHm_Chr7g0212911
rosa_laevigata	RLG00000002855
rosa_multiflora	Rmu_co8277115.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246430
rosa_rugosa	Rorug07G0137700 Rorug07G0137800 Rorug07G0137900 Rorug07G0138000 Rorug07G0138100
rosa_samantha	Rh7AG269200 Rh7BG264800 Rh7CG288400 Rh7DG277400
rosa_wichuraiana	Rw7G023390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1047
AccBSI	CCGCTC	1 cut(s)	622
AccI	GTMKAC	2 cut(s)	80, 127
AciI	CCGC	3 cut(s)	198, 622, 1143
AclI	AACGTT	1 cut(s)	246
AclWI	GGATC	4 cut(s)	708, 817, 942, 1145
AcsI	RAATTY	2 cut(s)	162, 925
AfaI	GTAC	2 cut(s)	416, 826
AfiI	CCNNNNNNNGG	3 cut(s)	68, 176, 215
AflII	CTTAAG	1 cut(s)	73
AgsI	TTSAA	3 cut(s)	68, 316, 1188
AjnI	CCWGG	2 cut(s)	175, 940
AloI	GAACNNNNNNTCC	4 cut(s)	1065, 1097, 1113, 1145
AluBI	AGCT	3 cut(s)	371, 674, 1103
AluI	AGCT	3 cut(s)	371, 674, 1103
Alw21I	GWGCWC	1 cut(s)	496
Alw26I	GTCTC	2 cut(s)	718, 1217
AlwI	GGATC	4 cut(s)	708, 817, 942, 1145
AlwNI	CAGNNNCTG	1 cut(s)	556
Ama87I	CYCGRG	1 cut(s)	1220
AoxI	GGCC	5 cut(s)	202, 454, 507, 602, 1016
ApaI	GGGCCC	1 cut(s)	206
ApeKI	GCWGC	1 cut(s)	440
ApoI	RAATTY	2 cut(s)	162, 925
AspS9I	GGNCC	2 cut(s)	202, 203
AsuC2I	CCSGG	1 cut(s)	932
AsuII	TTCGAA	1 cut(s)	1132
AvaI	CYCGRG	1 cut(s)	1220
BaeGI	GKGCMC	1 cut(s)	206
BanII	GRGCYC	1 cut(s)	206
BauI	CACGAG	2 cut(s)	654, 1098
BbsI	GAAGAC	1 cut(s)	283
Bbv12I	GWGCWC	1 cut(s)	496
BbvI	GCAGC	1 cut(s)	427
BccI	CCATC	5 cut(s)	328, 701, 799, 815, 1015
BciT130I	CCWGG	2 cut(s)	177, 942
BcnI	CCSGG	1 cut(s)	932
BcoDI	GTCTC	2 cut(s)	718, 1217
BfmI	CTRYAG	1 cut(s)	238
BfrI	CTTAAG	1 cut(s)	73
BfuAI	ACCTGC	1 cut(s)	1047
BisI	GCNGC	1 cut(s)	441
BlsI	GCNGC	1 cut(s)	442
Bme1390I	CCNGG	3 cut(s)	177, 932, 942
BmeT110I	CYCGRG	1 cut(s)	1220
BmgT120I	GGNCC	2 cut(s)	202, 203
BmiI	GGNNCC	3 cut(s)	60, 203, 204
BmrFI	CCNGG	3 cut(s)	177, 932, 942
BmsI	GCATC	1 cut(s)	679
BpiI	GAAGAC	1 cut(s)	283
Bpu14I	TTCGAA	1 cut(s)	1132
BpuMI	CCSGG	1 cut(s)	932
BsaI	GGTCTC	1 cut(s)	1217
BsaJI	CCNNGG	1 cut(s)	214
Bsc4I	CCNNNNNNNGG	3 cut(s)	68, 176, 215
Bse1I	ACTGG	2 cut(s)	605, 1085
BseBI	CCWGG	2 cut(s)	177, 942
BseDI	CCNNGG	1 cut(s)	214
BseGI	GGATG	1 cut(s)	268
BseLI	CCNNNNNNNGG	3 cut(s)	68, 176, 215
BseMII	CTCAG	1 cut(s)	1153
BseNI	ACTGG	2 cut(s)	605, 1085
BseSI	GKGCMC	1 cut(s)	206
BseXI	GCAGC	1 cut(s)	427
BseYI	CCCAGC	1 cut(s)	427
BshFI	GGCC	5 cut(s)	204, 456, 509, 604, 1018
BsiHKAI	GWGCWC	1 cut(s)	496
BsiHKCI	CYCGRG	1 cut(s)	1220
BsiSI	CCGG	1 cut(s)	931
BslI	CCNNNNNNNGG	3 cut(s)	68, 176, 215
BsmAI	GTCTC	2 cut(s)	718, 1217
BsmI	GAATGC	1 cut(s)	994
BsnI	GGCC	5 cut(s)	204, 456, 509, 604, 1018
Bso31I	GGTCTC	1 cut(s)	1217
BsoBI	CYCGRG	1 cut(s)	1220
Bsp119I	TTCGAA	1 cut(s)	1132
Bsp120I	GGGCCC	1 cut(s)	202
Bsp1286I	GDGCHC	2 cut(s)	206, 496
Bsp143I	GATC	4 cut(s)	700, 809, 934, 1150
BspACI	CCGC	3 cut(s)	198, 622, 1143
BspANI	GGCC	5 cut(s)	204, 456, 509, 604, 1018
BspCNI	CTCAG	1 cut(s)	1152
BspHI	TCATGA	1 cut(s)	1158
BspLI	GGNNCC	3 cut(s)	60, 203, 204
BspMI	ACCTGC	1 cut(s)	1047
BspPI	GGATC	4 cut(s)	708, 817, 942, 1145
BspT104I	TTCGAA	1 cut(s)	1132
BspTI	CTTAAG	1 cut(s)	73
BspTNI	GGTCTC	1 cut(s)	1217
BsrBI	CCGCTC	1 cut(s)	622
BsrI	ACTGG	2 cut(s)	605, 1085
BssECI	CCNNGG	1 cut(s)	214
BssMI	GATC	4 cut(s)	700, 809, 934, 1150
BssNAI	GTATAC	2 cut(s)	81, 128
BssSI	CACGAG	2 cut(s)	654, 1098
BssT1I	CCWWGG	1 cut(s)	214
Bst1107I	GTATAC	2 cut(s)	81, 128
Bst2BI	CACGAG	2 cut(s)	654, 1098
Bst2UI	CCWGG	2 cut(s)	177, 942
Bst4CI	ACNGT	3 cut(s)	564, 631, 857
Bst6I	CTCTTC	2 cut(s)	576, 1224
BstAFI	CTTAAG	1 cut(s)	73
BstAPI	GCANNNNNTGC	1 cut(s)	556
BstBI	TTCGAA	1 cut(s)	1132
BstDEI	CTNAG	2 cut(s)	392, 1139
BstENI	CCTNNNNNAGG	1 cut(s)	213
BstF5I	GGATG	1 cut(s)	268
BstKTI	GATC	4 cut(s)	703, 812, 937, 1153
BstMAI	GTCTC	2 cut(s)	718, 1217
BstMBI	GATC	4 cut(s)	700, 809, 934, 1150
BstMWI	GCNNNNNNNGC	5 cut(s)	210, 234, 506, 515, 556
BstNI	CCWGG	2 cut(s)	177, 942
BstSCI	CCNGG	3 cut(s)	175, 930, 940
BstSFI	CTRYAG	1 cut(s)	238
BstSLI	GKGCMC	1 cut(s)	206
BstV1I	GCAGC	1 cut(s)	427
BstV2I	GAAGAC	1 cut(s)	283
BstX2I	RGATCY	3 cut(s)	700, 809, 934
BstYI	RGATCY	3 cut(s)	700, 809, 934
BstZ17I	GTATAC	2 cut(s)	81, 128
BsuRI	GGCC	5 cut(s)	204, 456, 509, 604, 1018
BtsCI	GGATG	1 cut(s)	268
BtsI	GCAGTG	1 cut(s)	49
BtsIMutI	CAGTG	2 cut(s)	49, 627
BveI	ACCTGC	1 cut(s)	1047
CaiI	CAGNNNCTG	1 cut(s)	556
CciI	TCATGA	1 cut(s)	1158
Cfr13I	GGNCC	2 cut(s)	202, 203
CsiI	ACCWGGT	1 cut(s)	940
Csp6I	GTAC	2 cut(s)	415, 825
CviAII	CATG	6 cut(s)	54, 295, 497, 581, 797, 1159
CviQI	GTAC	2 cut(s)	415, 825
DdeI	CTNAG	2 cut(s)	392, 1139
DpnI	GATC	4 cut(s)	702, 811, 936, 1152
DpnII	GATC	4 cut(s)	700, 809, 934, 1150
Eam1104I	CTCTTC	2 cut(s)	576, 1224
EarI	CTCTTC	2 cut(s)	576, 1224
Eco130I	CCWWGG	1 cut(s)	214
Eco24I	GRGCYC	1 cut(s)	206
Eco31I	GGTCTC	1 cut(s)	1217
Eco88I	CYCGRG	1 cut(s)	1220
EcoNI	CCTNNNNNAGG	1 cut(s)	213
EcoO109I	RGGNCCY	2 cut(s)	202, 203
EcoRII	CCWGG	2 cut(s)	175, 940
EcoT14I	CCWWGG	1 cut(s)	214
EcoT38I	GRGCYC	1 cut(s)	206
ErhI	CCWWGG	1 cut(s)	214
FaeI	CATG	6 cut(s)	57, 298, 500, 584, 800, 1162
FalI	AAGNNNNNCTT	2 cut(s)	831, 863
FatI	CATG	6 cut(s)	53, 294, 496, 580, 796, 1158
FauI	CCCGC	1 cut(s)	191
FauNDI	CATATG	1 cut(s)	408
FblI	GTMKAC	2 cut(s)	80, 127
Fnu4HI	GCNGC	1 cut(s)	441
FokI	GGATG	1 cut(s)	275
FriOI	GRGCYC	1 cut(s)	206
Fsp4HI	GCNGC	1 cut(s)	441
GluI	GCNGC	1 cut(s)	441
GsaI	CCCAGC	1 cut(s)	431
HaeIII	GGCC	5 cut(s)	204, 456, 509, 604, 1018
HapII	CCGG	1 cut(s)	931
Hin1II	CATG	6 cut(s)	57, 298, 500, 584, 800, 1162
HincII	GTYRAC	3 cut(s)	349, 789, 984
HindII	GTYRAC	3 cut(s)	349, 789, 984
HindIII	AAGCTT	1 cut(s)	369
HinfI	GANTC	6 cut(s)	251, 274, 553, 904, 980, 1162
HpaII	CCGG	1 cut(s)	931
Hpy166II	GTNNAC	6 cut(s)	81, 128, 307, 349, 789, 984
Hpy188I	TCNGA	6 cut(s)	15, 700, 861, 903, 975, 1068
Hpy188III	TCNNGA	8 cut(s)	313, 656, 686, 758, 1011, 1159, 1220, 1222
Hpy8I	GTNNAC	6 cut(s)	81, 128, 307, 349, 789, 984
Hpy99I	CGWCG	1 cut(s)	861
HpyAV	CCTTC	4 cut(s)	62, 467, 717, 1008
HpyCH4III	ACNGT	3 cut(s)	564, 631, 857
HpyCH4IV	ACGT	2 cut(s)	246, 523
HpyCH4V	TGCA	5 cut(s)	22, 389, 406, 1079, 1097
HpyF10VI	GCNNNNNNNGC	5 cut(s)	210, 234, 506, 515, 556
HpyF3I	CTNAG	2 cut(s)	392, 1139
HpySE526I	ACGT	2 cut(s)	246, 523
Hsp92II	CATG	6 cut(s)	57, 298, 500, 584, 800, 1162
Kzo9I	GATC	4 cut(s)	700, 809, 934, 1150
Lsp1109I	GCAGC	1 cut(s)	427
LweI	GCATC	1 cut(s)	679
MabI	ACCWGGT	1 cut(s)	940
MaeII	ACGT	2 cut(s)	246, 523
MaeIII	GTNAC	1 cut(s)	959
MalI	GATC	4 cut(s)	702, 811, 936, 1152
MbiI	CCGCTC	1 cut(s)	622
MboI	GATC	4 cut(s)	700, 809, 934, 1150
MfeI	CAATTG	1 cut(s)	63
MflI	RGATCY	3 cut(s)	700, 809, 934
MhlI	GDGCHC	2 cut(s)	206, 496
MluCI	AATT	9 cut(s)	63, 162, 219, 282, 464, 659, 925, 1199, 1211
MlyI	GAGTC	2 cut(s)	989, 1156
MmeI	TCCRAC	2 cut(s)	599, 839
MseI	TTAA	2 cut(s)	74, 111
MslI	CAYNNNNRTG	1 cut(s)	501
MspA1I	CMGCKG	1 cut(s)	1143
MspCI	CTTAAG	1 cut(s)	73
MspI	CCGG	1 cut(s)	931
MspR9I	CCNGG	3 cut(s)	177, 932, 942
MunI	CAATTG	1 cut(s)	63
Mva1269I	GAATGC	1 cut(s)	994
MvaI	CCWGG	2 cut(s)	177, 942
MwoI	GCNNNNNNNGC	5 cut(s)	210, 234, 506, 515, 556
NciI	CCSGG	1 cut(s)	932
NdeI	CATATG	1 cut(s)	408
NdeII	GATC	4 cut(s)	700, 809, 934, 1150
NlaIII	CATG	6 cut(s)	57, 298, 500, 584, 800, 1162
NlaIV	GGNNCC	3 cut(s)	60, 203, 204
NmuCI	GTSAC	1 cut(s)	959
NspV	TTCGAA	1 cut(s)	1132
PaeR7I	CTCGAG	1 cut(s)	1220
PagI	TCATGA	1 cut(s)	1158
PctI	GAATGC	1 cut(s)	994
PfeI	GAWTC	4 cut(s)	251, 274, 553, 904
PfoI	TCCNGGA	2 cut(s)	175, 930
PkrI	GCNGC	1 cut(s)	442
PleI	GAGTC	2 cut(s)	988, 1156
PpsI	GAGTC	2 cut(s)	988, 1156
Psp1406I	AACGTT	1 cut(s)	246
Psp6I	CCWGG	2 cut(s)	175, 940
PspFI	CCCAGC	1 cut(s)	427
PspGI	CCWGG	2 cut(s)	175, 940
PspN4I	GGNNCC	3 cut(s)	60, 203, 204
PspOMI	GGGCCC	1 cut(s)	202
PspPI	GGNCC	2 cut(s)	202, 203
PstNI	CAGNNNCTG	1 cut(s)	556
PsuI	RGATCY	3 cut(s)	700, 809, 934
RsaI	GTAC	2 cut(s)	416, 826
RsaNI	GTAC	2 cut(s)	415, 825
RseI	CAYNNNNRTG	1 cut(s)	501
SaqAI	TTAA	2 cut(s)	74, 111
SatI	GCNGC	1 cut(s)	441
Sau3AI	GATC	4 cut(s)	700, 809, 934, 1150
Sau96I	GGNCC	2 cut(s)	202, 203
SchI	GAGTC	2 cut(s)	989, 1156
ScrFI	CCNGG	3 cut(s)	177, 932, 942
SduI	GDGCHC	2 cut(s)	206, 496
SexAI	ACCWGGT	1 cut(s)	940
SfaNI	GCATC	1 cut(s)	679
SfcI	CTRYAG	1 cut(s)	238
Sfr274I	CTCGAG	1 cut(s)	1220
SfuI	TTCGAA	1 cut(s)	1132
SlaI	CTCGAG	1 cut(s)	1220
SmiMI	CAYNNNNRTG	1 cut(s)	501
SmlI	CTYRAG	2 cut(s)	73, 1220
SmoI	CTYRAG	2 cut(s)	73, 1220
Sse9I	AATT	9 cut(s)	63, 162, 219, 282, 464, 659, 925, 1199, 1211
SsiI	CCGC	3 cut(s)	198, 622, 1143
SspI	AATATT	1 cut(s)	109
StyD4I	CCNGG	3 cut(s)	175, 930, 940
StyI	CCWWGG	1 cut(s)	214
TaaI	ACNGT	3 cut(s)	564, 631, 857
TaiI	ACGT	2 cut(s)	249, 526
TaqI	TCGA	3 cut(s)	618, 1132, 1221
TasI	AATT	9 cut(s)	63, 162, 219, 282, 464, 659, 925, 1199, 1211
TfiI	GAWTC	4 cut(s)	251, 274, 553, 904
Tru1I	TTAA	2 cut(s)	74, 111
Tru9I	TTAA	2 cut(s)	74, 111
TscAI	CASTG	2 cut(s)	49, 634
TseFI	GTSAC	1 cut(s)	959
TseI	GCWGC	1 cut(s)	440
Tsp45I	GTSAC	1 cut(s)	959
TspDTI	ATGAA	6 cut(s)	17, 119, 283, 425, 657, 738
TspRI	CASTG	2 cut(s)	49, 634
Vha464I	CTTAAG	1 cut(s)	73
XagI	CCTNNNNNAGG	1 cut(s)	213
XapI	RAATTY	2 cut(s)	162, 925
XcmI	CCANNNNNNNNNTGG	1 cut(s)	221
XhoI	CTCGAG	1 cut(s)	1220
XmiI	GTMKAC	2 cut(s)	80, 127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.