Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0001625

Physical Location & Seq

Genomic Coordinates Reverse (-)

2346267 .. 2347855

Gene Structure 1589 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGATCTGTTCTACATCCATCTACACATATTTAAATGATTTCCATTTTAACTTTCATTTACGCTGGTTGTGTAGAGATGATGGTCGATCCACGTTTGATGGCACTACGAAAGCAAATGTTTCACTATATGACCATCGGACTTACCACTTATATGAAGATGATTACTTACGAGTTTGTCAGATTCCAAAAAGAAAGGGAGCAAATTTCCGGGATCTACCTGGTGTTGTTGTAGGAAGTGACAATGTGGCTCGGAGAGAGTCAACTGAAAAGCATTCTCTGTTGCCATCTGGAAGGCCATTAGTACCAGACTATTGCTTTACTTTTGAACAAGGCAAATCGAAAAGACCGTTTGCGAGGTTATGGTGGGATGAGACAGTGCCCACTGTGCTTACTTTCCCAAGTTGTCACAACCAGGTAGTATTACATCCGGAGCAGGACCGAATTCTCACTGTACGTGAATCTGCAAGATTGCAAGGCTTTCCTGATTATTATAGGTTCTGTGGGACAGTTAAAGAGAGGTATTGTCAGATTGGAAATGCAGTTCCAGTTTCGGTTGCACGAGCTTTAGGATATGCGTTGGGATTGGCAGTTCGAAAACTCAGCGGAAATGATCCACTCATGACTCTCCCCAATAAGTTTTCTCATTCAAACTTCTTCCAATTCACAAAAAAGTTGCCTCTCGAGACCGAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003886 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009008 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010426 GO:0016740 GO:0016741 GO:0032259 GO:0032776 GO:0033554 GO:0034605 GO:0034641 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090116 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko05206 map00270 map01100 map05206

Pfam Domains

Protein Families

BAH Chromo DNA_methylase

Protein Analysis

232

Amino Acids

26.7

Weight (kDa)

8.8

Isoelectric Point (pI)

44.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_methylase	PF00145	108 - 193	4.2e-15	C-5 cytosine-specific DNA methylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80740 AT4G19020 AT4G19020
fragaria_vesca	FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610
malus_domestica	MD06G1022700.v1.1
prunus_persica	Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1
pyrus_communis	pycom06g01820 pycom06g01830 pycom06g01850 pycom06g01860
rosa_chinensis	RchiOBHm_Chr7g0212911
rosa_laevigata	RLG00000002855
rosa_multiflora	Rmu_co8277115.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246430
rosa_rugosa	Rorug07G0137700 Rorug07G0137800 Rorug07G0137900 Rorug07G0138000 Rorug07G0138100
rosa_samantha	Rh7AG269200 Rh7BG264800 Rh7CG288400 Rh7DG277400
rosa_wichuraiana	Rw7G023390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	427
AciI	CCGC	1 cut(s)	603
AclWI	GGATC	3 cut(s)	81, 219, 605
AcsI	RAATTY	2 cut(s)	202, 441
AfaI	GTAC	2 cut(s)	303, 453
AgsI	TTSAA	2 cut(s)	326, 648
AjnI	CCWGG	2 cut(s)	217, 411
AloI	GAACNNNNNNTCC	4 cut(s)	525, 557, 573, 605
AluBI	AGCT	1 cut(s)	563
AluI	AGCT	1 cut(s)	563
Alw26I	GTCTC	2 cut(s)	365, 677
AlwI	GGATC	3 cut(s)	81, 219, 605
Ama87I	CYCGRG	1 cut(s)	680
Aor13HI	TCCGGA	1 cut(s)	427
AoxI	GGCC	1 cut(s)	293
ApoI	RAATTY	2 cut(s)	202, 441
AspS9I	GGNCC	1 cut(s)	436
AsuC2I	CCSGG	1 cut(s)	209
AsuII	TTCGAA	1 cut(s)	592
AvaI	CYCGRG	1 cut(s)	680
AvaII	GGWCC	1 cut(s)	436
BaeGI	GKGCMC	1 cut(s)	381
BauI	CACGAG	1 cut(s)	558
BccI	CCATC	5 cut(s)	26, 74, 92, 141, 292
BciT130I	CCWGG	2 cut(s)	219, 413
BcnI	CCSGG	1 cut(s)	209
BcoDI	GTCTC	2 cut(s)	365, 677
Bme1390I	CCNGG	3 cut(s)	209, 219, 413
Bme18I	GGWCC	1 cut(s)	436
BmeT110I	CYCGRG	1 cut(s)	680
BmgT120I	GGNCC	1 cut(s)	436
BmrFI	CCNGG	3 cut(s)	209, 219, 413
Bpu14I	TTCGAA	1 cut(s)	592
BpuMI	CCSGG	1 cut(s)	209
BsaAI	YACGTR	1 cut(s)	455
BsaI	GGTCTC	1 cut(s)	677
BsaWI	WCCGGW	1 cut(s)	427
Bse1I	ACTGG	1 cut(s)	545
BseAI	TCCGGA	1 cut(s)	427
BseBI	CCWGG	2 cut(s)	219, 413
BseGI	GGATG	3 cut(s)	14, 373, 424
BseMII	CTCAG	1 cut(s)	613
BseNI	ACTGG	1 cut(s)	545
BseSI	GKGCMC	1 cut(s)	381
BshFI	GGCC	1 cut(s)	295
BsiHKCI	CYCGRG	1 cut(s)	680
BsiSI	CCGG	2 cut(s)	208, 428
BslFI	GGGAC	1 cut(s)	517
BsmAI	GTCTC	2 cut(s)	365, 677
BsmFI	GGGAC	1 cut(s)	517
BsmI	GAATGC	1 cut(s)	271
BsnI	GGCC	1 cut(s)	295
Bso31I	GGTCTC	1 cut(s)	677
BsoBI	CYCGRG	1 cut(s)	680
Bsp119I	TTCGAA	1 cut(s)	592
Bsp1286I	GDGCHC	1 cut(s)	381
Bsp13I	TCCGGA	1 cut(s)	427
Bsp143I	GATC	4 cut(s)	3, 86, 211, 610
BspACI	CCGC	1 cut(s)	603
BspANI	GGCC	1 cut(s)	295
BspCNI	CTCAG	1 cut(s)	612
BspEI	TCCGGA	1 cut(s)	427
BspHI	TCATGA	1 cut(s)	618
BspPI	GGATC	3 cut(s)	81, 219, 605
BspT104I	TTCGAA	1 cut(s)	592
BspTNI	GGTCTC	1 cut(s)	677
BsrI	ACTGG	1 cut(s)	545
BssMI	GATC	4 cut(s)	3, 86, 211, 610
BssSI	CACGAG	1 cut(s)	558
Bst2BI	CACGAG	1 cut(s)	558
Bst2UI	CCWGG	2 cut(s)	219, 413
Bst4CI	ACNGT	5 cut(s)	348, 376, 385, 451, 508
Bst6I	CTCTTC	1 cut(s)	684
BstBAI	YACGTR	1 cut(s)	455
BstBI	TTCGAA	1 cut(s)	592
BstDEI	CTNAG	1 cut(s)	599
BstF5I	GGATG	3 cut(s)	14, 373, 424
BstKTI	GATC	4 cut(s)	6, 89, 214, 613
BstMAI	GTCTC	2 cut(s)	365, 677
BstMBI	GATC	4 cut(s)	3, 86, 211, 610
BstMWI	GCNNNNNNNGC	1 cut(s)	385
BstNI	CCWGG	2 cut(s)	219, 413
BstSCI	CCNGG	3 cut(s)	207, 217, 411
BstSLI	GKGCMC	1 cut(s)	381
BstX2I	RGATCY	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	211
BsuRI	GGCC	1 cut(s)	295
BtsCI	GGATG	3 cut(s)	14, 373, 424
BtsIMutI	CAGTG	3 cut(s)	381, 381, 447
CciI	TCATGA	1 cut(s)	618
Cfr13I	GGNCC	1 cut(s)	436
CsiI	ACCWGGT	2 cut(s)	217, 411
Csp6I	GTAC	2 cut(s)	302, 452
CviAII	CATG	1 cut(s)	619
CviJI	RGCY	4 cut(s)	248, 295, 477, 563
CviKI_1	RGCY	4 cut(s)	248, 295, 477, 563
CviQI	GTAC	2 cut(s)	302, 452
DdeI	CTNAG	1 cut(s)	599
DpnI	GATC	4 cut(s)	5, 88, 213, 612
DpnII	GATC	4 cut(s)	3, 86, 211, 610
DraI	TTTAAA	1 cut(s)	33
Eam1104I	CTCTTC	1 cut(s)	684
EarI	CTCTTC	1 cut(s)	684
Eco31I	GGTCTC	1 cut(s)	677
Eco47I	GGWCC	1 cut(s)	436
Eco88I	CYCGRG	1 cut(s)	680
EcoRI	GAATTC	1 cut(s)	441
EcoRII	CCWGG	2 cut(s)	217, 411
FaeI	CATG	1 cut(s)	622
FaiI	YATR	9 cut(s)	28, 127, 129, 151, 153, 361, 492, 573, 620
FaqI	GGGAC	1 cut(s)	517
FatI	CATG	1 cut(s)	618
FokI	GGATG	2 cut(s)	380, 411
HaeIII	GGCC	1 cut(s)	295
HapII	CCGG	2 cut(s)	208, 428
Hin1II	CATG	1 cut(s)	622
HincII	GTYRAC	1 cut(s)	261
HindII	GTYRAC	1 cut(s)	261
HinfI	GANTC	4 cut(s)	181, 257, 458, 622
HpaII	CCGG	2 cut(s)	208, 428
Hpy166II	GTNNAC	1 cut(s)	261
Hpy188I	TCNGA	4 cut(s)	138, 180, 252, 528
Hpy188III	TCNNGA	6 cut(s)	288, 428, 482, 619, 680, 682
Hpy8I	GTNNAC	1 cut(s)	261
HpyAV	CCTTC	1 cut(s)	285
HpyCH4III	ACNGT	5 cut(s)	348, 376, 385, 451, 508
HpyCH4IV	ACGT	2 cut(s)	92, 454
HpyCH4V	TGCA	4 cut(s)	464, 472, 539, 557
HpyF10VI	GCNNNNNNNGC	1 cut(s)	385
HpyF3I	CTNAG	1 cut(s)	599
HpySE526I	ACGT	2 cut(s)	92, 454
Hsp92II	CATG	1 cut(s)	622
Kpn2I	TCCGGA	1 cut(s)	427
Kzo9I	GATC	4 cut(s)	3, 86, 211, 610
LmnI	GCTCC	2 cut(s)	197, 430
MabI	ACCWGGT	2 cut(s)	217, 411
MaeII	ACGT	2 cut(s)	92, 454
MaeIII	GTNAC	2 cut(s)	236, 404
MalI	GATC	4 cut(s)	5, 88, 213, 612
MboI	GATC	4 cut(s)	3, 86, 211, 610
MboII	GAAGA	2 cut(s)	167, 646
MflI	RGATCY	1 cut(s)	211
MhlI	GDGCHC	1 cut(s)	381
MluCI	AATT	3 cut(s)	202, 441, 659
MlyI	GAGTC	2 cut(s)	266, 616
MnlI	CCTC	3 cut(s)	348, 510, 687
MroI	TCCGGA	1 cut(s)	427
MseI	TTAA	3 cut(s)	32, 48, 510
MslI	CAYNNNNRTG	1 cut(s)	150
MspA1I	CMGCKG	1 cut(s)	603
MspI	CCGG	2 cut(s)	208, 428
MspR9I	CCNGG	3 cut(s)	209, 219, 413
Mva1269I	GAATGC	1 cut(s)	271
MvaI	CCWGG	2 cut(s)	219, 413
MwoI	GCNNNNNNNGC	1 cut(s)	385
NciI	CCSGG	1 cut(s)	209
NdeII	GATC	4 cut(s)	3, 86, 211, 610
NlaIII	CATG	1 cut(s)	622
NmuCI	GTSAC	2 cut(s)	236, 404
NspV	TTCGAA	1 cut(s)	592
PaeR7I	CTCGAG	1 cut(s)	680
PagI	TCATGA	1 cut(s)	618
PcsI	WCGNNNNNNNCGW	1 cut(s)	344
PctI	GAATGC	1 cut(s)	271
PfeI	GAWTC	2 cut(s)	181, 458
PfoI	TCCNGGA	1 cut(s)	207
PleI	GAGTC	2 cut(s)	265, 616
PpsI	GAGTC	2 cut(s)	265, 616
Ppu21I	YACGTR	1 cut(s)	455
Psp6I	CCWGG	2 cut(s)	217, 411
PspGI	CCWGG	2 cut(s)	217, 411
PspPI	GGNCC	1 cut(s)	436
PsuI	RGATCY	1 cut(s)	211
RsaI	GTAC	2 cut(s)	303, 453
RsaNI	GTAC	2 cut(s)	302, 452
RseI	CAYNNNNRTG	1 cut(s)	150
SaqAI	TTAA	3 cut(s)	32, 48, 510
Sau3AI	GATC	4 cut(s)	3, 86, 211, 610
Sau96I	GGNCC	1 cut(s)	436
SchI	GAGTC	2 cut(s)	266, 616
ScrFI	CCNGG	3 cut(s)	209, 219, 413
SduI	GDGCHC	1 cut(s)	381
SetI	ASST	8 cut(s)	95, 220, 359, 417, 457, 497, 521, 565
SexAI	ACCWGGT	2 cut(s)	217, 411
Sfr274I	CTCGAG	1 cut(s)	680
SfuI	TTCGAA	1 cut(s)	592
SinI	GGWCC	1 cut(s)	436
SlaI	CTCGAG	1 cut(s)	680
SmiI	ATTTAAAT	1 cut(s)	33
SmiMI	CAYNNNNRTG	1 cut(s)	150
SmlI	CTYRAG	1 cut(s)	680
SmoI	CTYRAG	1 cut(s)	680
Sse9I	AATT	3 cut(s)	202, 441, 659
SsiI	CCGC	1 cut(s)	603
StyD4I	CCNGG	3 cut(s)	207, 217, 411
SwaI	ATTTAAAT	1 cut(s)	33
TaaI	ACNGT	5 cut(s)	348, 376, 385, 451, 508
TaiI	ACGT	2 cut(s)	95, 457
TaqI	TCGA	4 cut(s)	85, 338, 592, 681
TaqII	GACCGA	1 cut(s)	453
TasI	AATT	3 cut(s)	202, 441, 659
TfiI	GAWTC	2 cut(s)	181, 458
Tru1I	TTAA	3 cut(s)	32, 48, 510
Tru9I	TTAA	3 cut(s)	32, 48, 510
TscAI	CASTG	3 cut(s)	381, 388, 454
TseFI	GTSAC	2 cut(s)	236, 404
Tsp45I	GTSAC	2 cut(s)	236, 404
TspDTI	ATGAA	2 cut(s)	44, 168
TspRI	CASTG	3 cut(s)	381, 388, 454
VpaK11BI	GGWCC	1 cut(s)	436
XapI	RAATTY	2 cut(s)	202, 441
XhoI	CTCGAG	1 cut(s)	680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.