Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0001625

Physical Location & Seq

Genomic Coordinates Reverse (-)

2353844 .. 2355741

Gene Structure 1898 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGATTTTCGGGTCTTTAACCCTCTGGATCCTTCGGTGTTTTTGGATCCTATGCTTTTGTGCACTCAAAGCATATCATCACATCCTCTGGTTATTATTGAAATTCCTGAAGCATAAAACAACGTGGTTTAGCTACTGTTTTGTTACTGCTACTTACAAAACTTGTGTGTTACCATATACATGGGAACCAATTGAAGGCTTAAGTAACTGCCAAGAAAGTATACAGGATTTTGTAAGAAATGGGAGGAAAGTGAAAATTTTGCCACTTCCAGTAAGTAGAGATGTTGATGTAATATGCGGGGGCCCTCCTTGCCAAGGAATTAGTGGCTATAATCACTATAGAAACGTTGTTTCTCCATTGGATGATGAGAGGAATCATCAAATTGTAGTCTTCATGGATATTGTAAACTTCTTGAAGCCAAAGTTTGTGCTGATGGAAAATGTTGTTGACATTTTGAGATTTGACAAAGCTTCTCTGGGAAGATATGCACTTAGTCGTTTGGTGGATATGAAGTACCAAGCGAGGCTGGGAATCCTTGCTGCTGGTTGTTATGGCCTTCCTCAATTTCGGTTGCGTGTTTTCTTGTGGGGTGCTCATGCTTGTGAGTCACACACATATACATGCACAGACAAAGCTAAAAGGCATGCCCAATGCATAAAATCCATAACCAGATTTATGAAACATAAGTCAAGCTCACTCAAATTCTCACGTTACCGTTTAATAATTCATTCATTCATTTTGGAAGGCCAAAAGAGCCTGACGTATTTTCCCCTCTTTTTTTTATCTTCGCAGAATCTGCCACAGTTTCCTCTTCCAACACATGATGTCATAATGAGATACTGGCCTCCACCAGAGTTCGAGCGGAACACTGTTGCTTACGATGAAGAACAACCTCGTGAATTATTAGAAAAAGCTCTTGTTCTTCGTGATGCCATCTCGGATCTTCCTTCTGTCTCAAACGATGAAAAAAGAGAAGAAATGCCATTCCAAAAGCCTCCTGAAACAGATTTCCAAAGATATATATTGATTTTTCTGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003886 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009008 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010426 GO:0016740 GO:0016741 GO:0032259 GO:0032776 GO:0033554 GO:0034605 GO:0034641 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090116 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko05206 map00270 map01100 map05206

Pfam Domains

Protein Families

BAH Chromo DNA_methylase

Protein Analysis

347

Amino Acids

40.53

Weight (kDa)

8.98

Isoelectric Point (pI)

42.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_methylase	PF00145	89 - 233	4.2e-20	C-5 cytosine-specific DNA methylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80740 AT4G19020 AT4G19020
fragaria_vesca	FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610
malus_domestica	MD06G1022700.v1.1
prunus_persica	Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1
pyrus_communis	pycom06g01820 pycom06g01830 pycom06g01850 pycom06g01860
rosa_chinensis	RchiOBHm_Chr7g0212911
rosa_laevigata	RLG00000002855
rosa_multiflora	Rmu_co8277115.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246430
rosa_rugosa	Rorug07G0137700 Rorug07G0137800 Rorug07G0137900 Rorug07G0138000 Rorug07G0138100
rosa_samantha	Rh7AG269200 Rh7BG264800 Rh7CG288400 Rh7DG277400
rosa_wichuraiana	Rw7G023390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	862
AccI	GTMKAC	1 cut(s)	220
AciI	CCGC	2 cut(s)	297, 862
AclI	AACGTT	1 cut(s)	345
AclWI	GGATC	5 cut(s)	22, 35, 40, 53, 948
AcsI	RAATTY	3 cut(s)	101, 255, 701
AcuI	CTGAAG	1 cut(s)	128
AfaI	GTAC	1 cut(s)	515
AfiI	CCNNNNNNNGG	2 cut(s)	194, 314
AflII	CTTAAG	1 cut(s)	199
AgsI	TTSAA	3 cut(s)	100, 194, 415
AluBI	AGCT	5 cut(s)	132, 470, 635, 693, 914
AluI	AGCT	5 cut(s)	132, 470, 635, 693, 914
Alw21I	GWGCWC	2 cut(s)	64, 595
Alw26I	GTCTC	1 cut(s)	958
Alw44I	GTGCAC	1 cut(s)	60
AlwI	GGATC	5 cut(s)	22, 35, 40, 53, 948
AlwNI	CAGNNNCTG	1 cut(s)	796
AoxI	GGCC	4 cut(s)	301, 553, 745, 842
ApaI	GGGCCC	1 cut(s)	305
ApaLI	GTGCAC	1 cut(s)	60
ApeKI	GCWGC	1 cut(s)	539
ApoI	RAATTY	3 cut(s)	101, 255, 701
AspS9I	GGNCC	2 cut(s)	301, 302
BaeGI	GKGCMC	2 cut(s)	64, 305
BamHI	GGATCC	2 cut(s)	27, 45
BanII	GRGCYC	1 cut(s)	305
BauI	CACGAG	1 cut(s)	894
BbsI	GAAGAC	1 cut(s)	382
Bbv12I	GWGCWC	2 cut(s)	64, 595
BbvI	GCAGC	1 cut(s)	526
BccI	CCATC	2 cut(s)	427, 941
BcoDI	GTCTC	1 cut(s)	958
BfmI	CTRYAG	1 cut(s)	337
BfrI	CTTAAG	1 cut(s)	199
BisI	GCNGC	1 cut(s)	540
BlsI	GCNGC	1 cut(s)	541
BmgT120I	GGNCC	2 cut(s)	301, 302
BmiI	GGNNCC	5 cut(s)	29, 47, 186, 302, 303
BmsI	GCATC	1 cut(s)	919
BpiI	GAAGAC	1 cut(s)	382
BsaJI	CCNNGG	1 cut(s)	313
Bsc4I	CCNNNNNNNGG	2 cut(s)	194, 314
Bse1I	ACTGG	2 cut(s)	269, 845
BseDI	CCNNGG	1 cut(s)	313
BseGI	GGATG	2 cut(s)	81, 367
BseLI	CCNNNNNNNGG	2 cut(s)	194, 314
BseNI	ACTGG	2 cut(s)	269, 845
BseSI	GKGCMC	2 cut(s)	64, 305
BseXI	GCAGC	1 cut(s)	526
BseYI	CCCAGC	1 cut(s)	526
BshFI	GGCC	4 cut(s)	303, 555, 747, 844
BsiHKAI	GWGCWC	2 cut(s)	64, 595
BslI	CCNNNNNNNGG	2 cut(s)	194, 314
BsmAI	GTCTC	1 cut(s)	958
BsnI	GGCC	4 cut(s)	303, 555, 747, 844
Bsp120I	GGGCCC	1 cut(s)	301
Bsp1286I	GDGCHC	3 cut(s)	64, 305, 595
Bsp143I	GATC	3 cut(s)	27, 45, 940
BspACI	CCGC	2 cut(s)	297, 862
BspANI	GGCC	4 cut(s)	303, 555, 747, 844
BspLI	GGNNCC	5 cut(s)	29, 47, 186, 302, 303
BspPI	GGATC	5 cut(s)	22, 35, 40, 53, 948
BspTI	CTTAAG	1 cut(s)	199
BsrBI	CCGCTC	1 cut(s)	862
BsrI	ACTGG	2 cut(s)	269, 845
BssECI	CCNNGG	1 cut(s)	313
BssMI	GATC	3 cut(s)	27, 45, 940
BssNAI	GTATAC	1 cut(s)	221
BssSI	CACGAG	1 cut(s)	894
BssT1I	CCWWGG	1 cut(s)	313
Bst1107I	GTATAC	1 cut(s)	221
Bst2BI	CACGAG	1 cut(s)	894
Bst4CI	ACNGT	4 cut(s)	137, 716, 804, 871
Bst6I	CTCTTC	1 cut(s)	816
BstAFI	CTTAAG	1 cut(s)	199
BstAPI	GCANNNNNTGC	1 cut(s)	796
BstC8I	GCNNGC	1 cut(s)	645
BstDEI	CTNAG	1 cut(s)	491
BstENI	CCTNNNNNAGG	1 cut(s)	312
BstF5I	GGATG	2 cut(s)	81, 367
BstKTI	GATC	3 cut(s)	30, 48, 943
BstMAI	GTCTC	1 cut(s)	958
BstMBI	GATC	3 cut(s)	27, 45, 940
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 309, 753, 796
BstNSI	RCATGY	2 cut(s)	624, 647
BstSFI	CTRYAG	1 cut(s)	337
BstSLI	GKGCMC	2 cut(s)	64, 305
BstV1I	GCAGC	1 cut(s)	526
BstV2I	GAAGAC	1 cut(s)	382
BstX2I	RGATCY	3 cut(s)	27, 45, 940
BstXI	CCANNNNNNTGG	1 cut(s)	180
BstYI	RGATCY	3 cut(s)	27, 45, 940
BstZ17I	GTATAC	1 cut(s)	221
BsuRI	GGCC	4 cut(s)	303, 555, 747, 844
BtsCI	GGATG	2 cut(s)	81, 367
BtsIMutI	CAGTG	1 cut(s)	867
Cac8I	GCNNGC	1 cut(s)	645
CaiI	CAGNNNCTG	1 cut(s)	796
Cfr13I	GGNCC	2 cut(s)	301, 302
Csp6I	GTAC	1 cut(s)	514
CviAII	CATG	6 cut(s)	180, 394, 596, 621, 644, 821
CviQI	GTAC	1 cut(s)	514
DdeI	CTNAG	1 cut(s)	491
DpnI	GATC	3 cut(s)	29, 47, 942
DpnII	GATC	3 cut(s)	27, 45, 940
Eam1104I	CTCTTC	1 cut(s)	816
EarI	CTCTTC	1 cut(s)	816
Eco130I	CCWWGG	1 cut(s)	313
Eco24I	GRGCYC	1 cut(s)	305
Eco57I	CTGAAG	1 cut(s)	128
EcoNI	CCTNNNNNAGG	1 cut(s)	312
EcoO109I	RGGNCCY	2 cut(s)	301, 302
EcoT14I	CCWWGG	1 cut(s)	313
EcoT22I	ATGCAT	1 cut(s)	656
EcoT38I	GRGCYC	1 cut(s)	305
ErhI	CCWWGG	1 cut(s)	313
FaeI	CATG	6 cut(s)	183, 397, 599, 624, 647, 824
FatI	CATG	6 cut(s)	179, 393, 595, 620, 643, 820
FauI	CCCGC	1 cut(s)	290
FblI	GTMKAC	1 cut(s)	220
Fnu4HI	GCNGC	1 cut(s)	540
FokI	GGATG	2 cut(s)	68, 374
FriOI	GRGCYC	1 cut(s)	305
Fsp4HI	GCNGC	1 cut(s)	540
GluI	GCNGC	1 cut(s)	540
GsaI	CCCAGC	1 cut(s)	530
HaeIII	GGCC	4 cut(s)	303, 555, 747, 844
Hin1II	CATG	6 cut(s)	183, 397, 599, 624, 647, 824
HincII	GTYRAC	1 cut(s)	448
HindII	GTYRAC	1 cut(s)	448
HindIII	AAGCTT	1 cut(s)	468
HinfI	GANTC	4 cut(s)	373, 531, 605, 793
Hpy166II	GTNNAC	4 cut(s)	62, 221, 406, 448
Hpy188I	TCNGA	1 cut(s)	940
Hpy188III	TCNNGA	6 cut(s)	25, 106, 412, 896, 926, 998
Hpy8I	GTNNAC	4 cut(s)	62, 221, 406, 448
HpyAV	CCTTC	5 cut(s)	41, 188, 566, 737, 957
HpyCH4III	ACNGT	4 cut(s)	137, 716, 804, 871
HpyCH4IV	ACGT	4 cut(s)	122, 345, 709, 761
HpyCH4V	TGCA	4 cut(s)	62, 488, 624, 654
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 309, 753, 796
HpyF3I	CTNAG	1 cut(s)	491
HpySE526I	ACGT	4 cut(s)	122, 345, 709, 761
Hsp92II	CATG	6 cut(s)	183, 397, 599, 624, 647, 824
Kzo9I	GATC	3 cut(s)	27, 45, 940
Lsp1109I	GCAGC	1 cut(s)	526
LweI	GCATC	1 cut(s)	919
MaeII	ACGT	4 cut(s)	122, 345, 709, 761
MaeIII	GTNAC	5 cut(s)	142, 168, 203, 606, 710
MalI	GATC	3 cut(s)	29, 47, 942
MbiI	CCGCTC	1 cut(s)	862
MboI	GATC	3 cut(s)	27, 45, 940
MboII	GAAGA	8 cut(s)	382, 492, 777, 803, 896, 914, 935, 986
MfeI	CAATTG	1 cut(s)	189
MflI	RGATCY	3 cut(s)	27, 45, 940
MhlI	GDGCHC	3 cut(s)	64, 305, 595
MluCI	AATT	9 cut(s)	101, 189, 255, 318, 381, 563, 701, 723, 899
MlyI	GAGTC	1 cut(s)	614
MmeI	TCCRAC	1 cut(s)	839
Mph1103I	ATGCAT	1 cut(s)	656
MseI	TTAA	3 cut(s)	17, 200, 719
MslI	CAYNNNNRTG	3 cut(s)	178, 600, 619
MspCI	CTTAAG	1 cut(s)	199
MunI	CAATTG	1 cut(s)	189
MwoI	GCNNNNNNNGC	4 cut(s)	68, 309, 753, 796
NdeII	GATC	3 cut(s)	27, 45, 940
NlaIII	CATG	6 cut(s)	183, 397, 599, 624, 647, 824
NlaIV	GGNNCC	5 cut(s)	29, 47, 186, 302, 303
NmuCI	GTSAC	1 cut(s)	606
NsiI	ATGCAT	1 cut(s)	656
NspI	RCATGY	2 cut(s)	624, 647
PaeI	GCATGC	1 cut(s)	647
PfeI	GAWTC	3 cut(s)	373, 531, 793
PkrI	GCNGC	1 cut(s)	541
PleI	GAGTC	1 cut(s)	613
PpsI	GAGTC	1 cut(s)	613
Psp1406I	AACGTT	1 cut(s)	345
PspFI	CCCAGC	1 cut(s)	526
PspN4I	GGNNCC	5 cut(s)	29, 47, 186, 302, 303
PspOMI	GGGCCC	1 cut(s)	301
PspPI	GGNCC	2 cut(s)	301, 302
PstNI	CAGNNNCTG	1 cut(s)	796
PsuI	RGATCY	3 cut(s)	27, 45, 940
RsaI	GTAC	1 cut(s)	515
RsaNI	GTAC	1 cut(s)	514
RseI	CAYNNNNRTG	3 cut(s)	178, 600, 619
SaqAI	TTAA	3 cut(s)	17, 200, 719
SatI	GCNGC	1 cut(s)	540
Sau3AI	GATC	3 cut(s)	27, 45, 940
Sau96I	GGNCC	2 cut(s)	301, 302
SchI	GAGTC	1 cut(s)	614
SduI	GDGCHC	3 cut(s)	64, 305, 595
SfaNI	GCATC	1 cut(s)	919
SfcI	CTRYAG	1 cut(s)	337
SmiMI	CAYNNNNRTG	3 cut(s)	178, 600, 619
SmlI	CTYRAG	1 cut(s)	199
SmoI	CTYRAG	1 cut(s)	199
SphI	GCATGC	1 cut(s)	647
Sse9I	AATT	9 cut(s)	101, 189, 255, 318, 381, 563, 701, 723, 899
SsiI	CCGC	2 cut(s)	297, 862
StyI	CCWWGG	1 cut(s)	313
TaaI	ACNGT	4 cut(s)	137, 716, 804, 871
TaiI	ACGT	4 cut(s)	125, 348, 712, 764
TaqI	TCGA	1 cut(s)	858
TasI	AATT	9 cut(s)	101, 189, 255, 318, 381, 563, 701, 723, 899
TfiI	GAWTC	3 cut(s)	373, 531, 793
Tru1I	TTAA	3 cut(s)	17, 200, 719
Tru9I	TTAA	3 cut(s)	17, 200, 719
TscAI	CASTG	1 cut(s)	874
TseFI	GTSAC	1 cut(s)	606
TseI	GCWGC	1 cut(s)	539
Tsp45I	GTSAC	1 cut(s)	606
TspDTI	ATGAA	8 cut(s)	382, 524, 692, 716, 720, 724, 897, 978
TspRI	CASTG	1 cut(s)	874
Vha464I	CTTAAG	1 cut(s)	199
VneI	GTGCAC	1 cut(s)	60
XagI	CCTNNNNNAGG	1 cut(s)	312
XapI	RAATTY	3 cut(s)	101, 255, 701
XceI	RCATGY	2 cut(s)	624, 647
XcmI	CCANNNNNNNNNTGG	1 cut(s)	320
XmiI	GTMKAC	1 cut(s)	220
Zsp2I	ATGCAT	1 cut(s)	656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.