pycom07g04230

TRAF-type zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0004794
Physical Location & Seq
Reverse (-)
3662505 .. 3664808
2304 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2040 bp
ATGTCAAGAGAATTGTCAACCATTGATGATCTACCTGCAAGTAATGTGGAACTCAAACCGGAAAAGATTGAAGACGGGAAGGATGGAGGTCCTTCGTTTCATTGTGATCTTTACGACACAGAATTAGTTTACAAGATAGCTCAAGTGTTCATCCCTGGATTAGCTACAGCTTGTGTTGACAACACATCTGGTGATATCTTCAGGACTGCTGGTTCAGTGGCTGCTGATCTCAGAAAGGAAATGGTGGAGTACATTACTCAGAGAAGCGAAAATTTTGTAGCGGAGTCTGTTATCTTGGAGGGTGGGACTGATGCACAAGTCTCTGATCATCCGTATGACATCATTTCTGATTTTGTTGATGACTTTGCAAGTTCCAAGAGAAATCTGTTTAGTCGGGTTACAGGATGGCTGCTAAGTGAAAAAAGAGAAGATAACATAGATGATTTCGTTCAAGAGATGGAAATAAACGGGTTTTGGTTGATTGATAAAAGAGAAGCAATAGCACAGACTCTGCTTAAGAATGTCGACTTCAAGAATGAACATCACTGCAACATGAAGTTTAACTCTTCAGAAGCGCTTGCCGAGCATGCTTCAAGCTGCAGTTTTAGGTCTATGACTTGCACAAATGAAGGTTGTACTATTGTATTTTGTGCAAGTCACATGGAGAAACATGATTCAATTTGCCCGTTCAAGATAATTCCATGTGAACAAAACTGCTCCAGTACCATCATGAGACGCGAGATGGACAGACATTGTATTACTGTCTGTCCAATGAAGCTTGTTAGTTGTCCTTTCTATGCAGTGGGTTGTCAATCTCCTGTACCACACTGTAAAGTTGAGCAACATCGTTTGGATGATCTCCCTTCTCACTTGCTTTTCATTCTTCAAACTATCCACAAGGAAGCATCTGCGGAGGATCTAAAGAAACGGGTGGAGCAAGTAGAAAAGGCATCTTCATCCAGTCAATTAGCAGATGCTCGAGATGTGAGATCGTTAACATCTGCAGTCAAGGGTATTGAAGAGAAACTTGGTCCAATGGAAGTGAGCAGCACGCACCCAGAGGATGTTGAAGCAAAACCAGGACCAGCAGAATTGAACGGCAAACATCCAGAGGATGTTGAAGCAAAATTAGGGCCAACGGAAGTGACCAGCAAACCCACCGAGGATCTTGAAGCAAAACTTCAGCCGCAGGAAGTGAACAAAAGAACCCCAGAGGCTGTTGAAACAAAACTAGGGCCAAAGGAAGTAAGCCGCAAACCCCCAGAGGATCGTGAAACTAAACTAGGTTCAAAAGAAACGAGCAGCAAAACCTCCAAGGATCCTGAGGCAAATCTCAGGCCAAATGAAGTGAGCAGCCAACCACGAGAGGATCTTGAAACAAATCAAGGGTCAAAGGAAGTGAGCAGAAAAACCTCAGAGGATCCTGAAGCAAAGCTTAGGACAAAGGAACCGAGCAGAAAATCCCCTGAGAATGTTGAAAAAAAACTAGCGCCAAAGGAAGTGGACGGCAAACCCCCAGAGGATCATGAAGCAAAAATTGGGACAAATGAAGTGAGCAGCCAACCCCGAGAGGACTGTGAAACAAGCCAAGGGTCAAAGGAAGTGAGCAGCAAACCCCCAGAGAATCCTGAAGCAAAGCTTGGGTCAAAGGAACTGAGCAGAAAATCCCCGAAGGATGTTGAAAAAAAACTTGCGCCAAAGGAAGTGGACAGCACACCACCAGAGGATCACGAACCAAAAACCAGGACAAAGGATGTGGACAATGAATCCCTGAAGGATATTGAAGTAAAACGTGGGCCAAAGGAAGTGAACAACGAATCCCCGAAGGATATTGAAGCAAAAGTAGGGCCAAAGGAAGCGAGCAGCAAAGACTCAAAGAATTTTGAAGCAAAAGTAACTCCTAGTGAAAGCAGCAGCAAACCCCCAGAGGATCTTGAAGCAAAACTGGGGCCAACAGAAGTGAGCGACAAACACAAGGATAGTGAAGAGAGTAGGGAAACCTCAACTTCGAAAAATGTCTTTGAGGAAGCTGAAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00130 map00130
Pfam Domains
Protein Families
zf-TRAF

Protein Analysis

680

Amino Acids

75.38

Weight (kDa)

5.07

Isoelectric Point (pI)

50.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-TRAF PF02176 224 - 282 2.5e-10 TRAF-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 43
AccI GTMKAC 1 cut(s) 525
AccII CGCG 1 cut(s) 738
AciI CCGC 4 cut(s) 281, 911, 1187, 1252
AcsI RAATTY 2 cut(s) 271, 1879
AcuI CTGAAG 6 cut(s) 184, 552, 1166, 1446, 1650, 1793
AfaI GTAC 4 cut(s) 251, 637, 724, 822
AfeI AGCGCT 1 cut(s) 576
AflII CTTAAG 1 cut(s) 515
AjnI CCWGG 3 cut(s) 154, 1078, 1742
AjuI GAANNNNNNNTTGG 6 cut(s) 1011, 1043, 1521, 1553, 1623, 1655
AloI GAACNNNNNNTCC 4 cut(s) 196, 228, 1802, 1834
AluBI AGCT 8 cut(s) 140, 164, 170, 597, 778, 1435, 1639, 2030
AluI AGCT 8 cut(s) 140, 164, 170, 597, 778, 1435, 1639, 2030
Alw26I GTCTC 2 cut(s) 325, 727
AlwNI CAGNNNCTG 3 cut(s) 221, 511, 1217
Ama87I CYCGRG 2 cut(s) 978, 1566
Aor51HI AGCGCT 1 cut(s) 576
AoxI GGCC 6 cut(s) 1133, 1235, 1337, 1796, 1847, 1949
ApoI RAATTY 2 cut(s) 271, 1879
ArsI GACNNNNNNTTYG 4 cut(s) 1373, 1405, 1628, 1660
AspLEI GCGC 3 cut(s) 577, 1492, 1696
AspS9I GGNCC 8 cut(s) 89, 1031, 1082, 1133, 1235, 1796, 1847, 1949
AsuHPI GGTGA 1 cut(s) 203
AsuII TTCGAA 1 cut(s) 2009
AvaI CYCGRG 2 cut(s) 978, 1566
AvaII GGWCC 3 cut(s) 89, 1031, 1082
AxyI CCTNAGG 1 cut(s) 1323
BamHI GGATCC 2 cut(s) 1318, 1420
BauI CACGAG 1 cut(s) 1362
BbsI GAAGAC 1 cut(s) 78
BccI CCATC 5 cut(s) 77, 399, 451, 734, 736
BceAI ACGGC 2 cut(s) 1114, 1522
BciT130I CCWGG 3 cut(s) 156, 1080, 1744
BclI TGATCA 1 cut(s) 325
BcoDI GTCTC 2 cut(s) 325, 727
BfaI CTAG 4 cut(s) 1232, 1283, 1487, 1902
BfmI CTRYAG 3 cut(s) 165, 598, 1002
BfoI RGCGCY 2 cut(s) 578, 1493
BfrI CTTAAG 1 cut(s) 515
BfuAI ACCTGC 1 cut(s) 43
Bme1390I CCNGG 3 cut(s) 156, 1080, 1744
Bme18I GGWCC 3 cut(s) 89, 1031, 1082
BmeT110I CYCGRG 2 cut(s) 978, 1566
BmgT120I GGNCC 8 cut(s) 89, 1031, 1082, 1133, 1235, 1796, 1847, 1949
BmiI GGNNCC 4 cut(s) 1320, 1422, 1449, 1950
BmrFI CCNGG 3 cut(s) 156, 1080, 1744
BmrI ACTGGG 1 cut(s) 1955
BmsI GCATC 4 cut(s) 301, 914, 959, 964
BmuI ACTGGG 1 cut(s) 1955
BpiI GAAGAC 1 cut(s) 78
BpmI CTGGAG 1 cut(s) 703
Bpu10I CCTNAGC 1 cut(s) 1436
Bpu14I TTCGAA 1 cut(s) 2009
BpuEI CTTGAG 1 cut(s) 126
BsaJI CCNNGG 4 cut(s) 154, 1161, 1314, 1588
BsaWI WCCGGW 1 cut(s) 58
Bse1I ACTGG 3 cut(s) 720, 960, 1950
Bse21I CCTNAGG 1 cut(s) 1323
BseBI CCWGG 3 cut(s) 156, 1080, 1744
BseDI CCNNGG 4 cut(s) 154, 1161, 1314, 1588
BseMII CTCAG 7 cut(s) 244, 272, 1314, 1348, 1428, 1458, 1646
BseNI ACTGG 3 cut(s) 720, 960, 1950
Bsh1236I CGCG 1 cut(s) 738
BshFI GGCC 6 cut(s) 1135, 1237, 1339, 1798, 1849, 1951
BsiHKCI CYCGRG 2 cut(s) 978, 1566
BsiSI CCGG 1 cut(s) 59
BslFI GGGAC 2 cut(s) 319, 1555
BsmAI GTCTC 2 cut(s) 325, 727
BsmBI CGTCTC 1 cut(s) 727
BsmFI GGGAC 2 cut(s) 319, 1555
BsnI GGCC 6 cut(s) 1135, 1237, 1339, 1798, 1849, 1951
BsoBI CYCGRG 2 cut(s) 978, 1566
Bsp119I TTCGAA 1 cut(s) 2009
BspACI CCGC 4 cut(s) 281, 911, 1187, 1252
BspANI GGCC 6 cut(s) 1135, 1237, 1339, 1798, 1849, 1951
BspCNI CTCAG 7 cut(s) 243, 271, 1315, 1347, 1427, 1459, 1647
BspFNI CGCG 1 cut(s) 738
BspHI TCATGA 2 cut(s) 729, 1525
BspLI GGNNCC 4 cut(s) 1320, 1422, 1449, 1950
BspMAI CTGCAG 2 cut(s) 602, 1006
BspMI ACCTGC 1 cut(s) 43
BspT104I TTCGAA 1 cut(s) 2009
BspTI CTTAAG 1 cut(s) 515
BsrI ACTGG 3 cut(s) 720, 960, 1950
BssECI CCNNGG 4 cut(s) 154, 1161, 1314, 1588
BssSI CACGAG 1 cut(s) 1362
BssT1I CCWWGG 2 cut(s) 1314, 1588
Bst2BI CACGAG 1 cut(s) 1362
Bst2UI CCWGG 3 cut(s) 156, 1080, 1744
Bst4CI ACNGT 3 cut(s) 763, 830, 1577
Bst6I CTCTTC 3 cut(s) 571, 1014, 1980
BstAFI CTTAAG 1 cut(s) 515
BstBI TTCGAA 1 cut(s) 2009
BstC8I GCNNGC 4 cut(s) 579, 588, 1052, 1861
BstDEI CTNAG 9 cut(s) 230, 258, 413, 1323, 1334, 1414, 1436, 1467, 1655
BstFNI CGCG 1 cut(s) 738
BstH2I RGCGCY 2 cut(s) 578, 1493
BstHHI GCGC 3 cut(s) 577, 1492, 1696
BstMAI GTCTC 2 cut(s) 325, 727
BstMWI GCNNNNNNNGC 2 cut(s) 583, 587
BstNI CCWGG 3 cut(s) 156, 1080, 1744
BstNSI RCATGY 1 cut(s) 590
BstSCI CCNGG 3 cut(s) 154, 1078, 1742
BstSFI CTRYAG 3 cut(s) 165, 598, 1002
BstUI CGCG 1 cut(s) 738
BstV2I GAAGAC 1 cut(s) 78
BstX2I RGATCY 6 cut(s) 916, 1165, 1318, 1369, 1420, 1930
BstYI RGATCY 6 cut(s) 916, 1165, 1318, 1369, 1420, 1930
Bsu36I CCTNAGG 1 cut(s) 1323
BsuRI GGCC 6 cut(s) 1135, 1237, 1339, 1798, 1849, 1951
BtsI GCAGTG 2 cut(s) 544, 807
BtsIMutI CAGTG 4 cut(s) 222, 544, 807, 826
BveI ACCTGC 1 cut(s) 43
Cac8I GCNNGC 4 cut(s) 579, 588, 1052, 1861
CaiI CAGNNNCTG 3 cut(s) 221, 511, 1217
CciI TCATGA 2 cut(s) 729, 1525
CfoI GCGC 3 cut(s) 577, 1492, 1696
Cfr13I GGNCC 8 cut(s) 89, 1031, 1082, 1133, 1235, 1796, 1847, 1949
CseI GACGC 1 cut(s) 744
Csp6I GTAC 4 cut(s) 250, 636, 723, 821
CspCI CAANNNNNGTGG 8 cut(s) 27, 62, 1482, 1517, 1686, 1721, 1737, 1772
CviAII CATG 7 cut(s) 553, 587, 661, 671, 702, 730, 1526
CviQI GTAC 4 cut(s) 250, 636, 723, 821
DdeI CTNAG 9 cut(s) 230, 258, 413, 1323, 1334, 1414, 1436, 1467, 1655
Eam1104I CTCTTC 3 cut(s) 571, 1014, 1980
EarI CTCTTC 3 cut(s) 571, 1014, 1980
Eco130I CCWWGG 2 cut(s) 1314, 1588
Eco32I GATATC 1 cut(s) 196
Eco47I GGWCC 3 cut(s) 89, 1031, 1082
Eco47III AGCGCT 1 cut(s) 576
Eco57I CTGAAG 6 cut(s) 184, 552, 1166, 1446, 1650, 1793
Eco81I CCTNAGG 1 cut(s) 1323
Eco88I CYCGRG 2 cut(s) 978, 1566
EcoO109I RGGNCCY 1 cut(s) 89
EcoRII CCWGG 3 cut(s) 154, 1078, 1742
EcoRV GATATC 1 cut(s) 196
EcoT14I CCWWGG 2 cut(s) 1314, 1588
ErhI CCWWGG 2 cut(s) 1314, 1588
Esp3I CGTCTC 1 cut(s) 727
FaeI CATG 7 cut(s) 556, 590, 664, 674, 705, 733, 1529
FalI AAGNNNNNCTT 8 cut(s) 1011, 1043, 1164, 1196, 1419, 1451, 1623, 1655
FaqI GGGAC 2 cut(s) 319, 1555
FatI CATG 7 cut(s) 552, 586, 660, 670, 701, 729, 1525
FbaI TGATCA 1 cut(s) 325
FblI GTMKAC 1 cut(s) 525
FspBI CTAG 4 cut(s) 1232, 1283, 1487, 1902
GlaI GCGC 3 cut(s) 576, 1491, 1695
GsuI CTGGAG 1 cut(s) 703
HaeII RGCGCY 2 cut(s) 578, 1493
HaeIII GGCC 6 cut(s) 1135, 1237, 1339, 1798, 1849, 1951
HapII CCGG 1 cut(s) 59
HgaI GACGC 1 cut(s) 744
HhaI GCGC 3 cut(s) 577, 1492, 1696
Hin1II CATG 7 cut(s) 556, 590, 664, 674, 705, 733, 1529
Hin6I GCGC 3 cut(s) 575, 1490, 1694
HinP1I GCGC 3 cut(s) 575, 1490, 1694
HincII GTYRAC 4 cut(s) 18, 178, 526, 996
HindII GTYRAC 4 cut(s) 18, 178, 526, 996
HindIII AAGCTT 3 cut(s) 776, 1433, 1637
HinfI GANTC 7 cut(s) 284, 508, 674, 1624, 1766, 1817, 1871
HpaI GTTAAC 1 cut(s) 996
HpaII CCGG 1 cut(s) 59
HphI GGTGA 1 cut(s) 203
Hpy188I TCNGA 6 cut(s) 233, 261, 325, 349, 571, 1417
HpyAV CCTTC 7 cut(s) 73, 102, 623, 873, 1666, 1768, 1819
HpyCH4III ACNGT 3 cut(s) 763, 830, 1577
HpyCH4IV ACGT 1 cut(s) 1792
HpyCH4V TGCA 9 cut(s) 38, 314, 368, 549, 600, 621, 653, 800, 1004
HpyF10VI GCNNNNNNNGC 2 cut(s) 583, 587
HpyF3I CTNAG 9 cut(s) 230, 258, 413, 1323, 1334, 1414, 1436, 1467, 1655
HpySE526I ACGT 1 cut(s) 1792
Hsp92II CATG 7 cut(s) 556, 590, 664, 674, 705, 733, 1529
HspAI GCGC 3 cut(s) 575, 1490, 1694
Ksp22I TGATCA 1 cut(s) 325
KspAI GTTAAC 1 cut(s) 996
LmnI GCTCC 2 cut(s) 722, 934
LweI GCATC 4 cut(s) 301, 914, 959, 964
MaeI CTAG 4 cut(s) 1232, 1283, 1487, 1902
MaeII ACGT 1 cut(s) 1792
MaeIII GTNAC 4 cut(s) 397, 656, 1144, 1894
MboII GAAGA 8 cut(s) 83, 190, 440, 558, 875, 945, 1031, 1997
MflI RGATCY 6 cut(s) 916, 1165, 1318, 1369, 1420, 1930
MlyI GAGTC 3 cut(s) 293, 502, 1865
MseI TTAA 3 cut(s) 516, 561, 995
MslI CAYNNNNRTG 1 cut(s) 333
MspCI CTTAAG 1 cut(s) 515
MspI CCGG 1 cut(s) 59
MspR9I CCNGG 3 cut(s) 156, 1080, 1744
MvaI CCWGG 3 cut(s) 156, 1080, 1744
MvnI CGCG 1 cut(s) 738
MwoI GCNNNNNNNGC 2 cut(s) 583, 587
NlaIII CATG 7 cut(s) 556, 590, 664, 674, 705, 733, 1529
NlaIV GGNNCC 4 cut(s) 1320, 1422, 1449, 1950
NmeAIII GCCGAG 1 cut(s) 607
NmuCI GTSAC 2 cut(s) 656, 1144
NspI RCATGY 1 cut(s) 590
NspV TTCGAA 1 cut(s) 2009
PaeI GCATGC 1 cut(s) 590
PaeR7I CTCGAG 1 cut(s) 978
PagI TCATGA 2 cut(s) 729, 1525
PfeI GAWTC 4 cut(s) 674, 1624, 1766, 1817
PleI GAGTC 3 cut(s) 292, 502, 1865
PpsI GAGTC 3 cut(s) 292, 502, 1865
PpuMI RGGWCCY 1 cut(s) 89
Psp5II RGGWCCY 1 cut(s) 89
Psp6I CCWGG 3 cut(s) 154, 1078, 1742
PspGI CCWGG 3 cut(s) 154, 1078, 1742
PspN4I GGNNCC 4 cut(s) 1320, 1422, 1449, 1950
PspPI GGNCC 8 cut(s) 89, 1031, 1082, 1133, 1235, 1796, 1847, 1949
PspPPI RGGWCCY 1 cut(s) 89
PstI CTGCAG 2 cut(s) 602, 1006
PstNI CAGNNNCTG 3 cut(s) 221, 511, 1217
PsuI RGATCY 6 cut(s) 916, 1165, 1318, 1369, 1420, 1930
RsaI GTAC 4 cut(s) 251, 637, 724, 822
RsaNI GTAC 4 cut(s) 250, 636, 723, 821
RseI CAYNNNNRTG 1 cut(s) 333
SalI GTCGAC 1 cut(s) 524
SaqAI TTAA 3 cut(s) 516, 561, 995
Sau96I GGNCC 8 cut(s) 89, 1031, 1082, 1133, 1235, 1796, 1847, 1949
SchI GAGTC 3 cut(s) 293, 502, 1865
ScrFI CCNGG 3 cut(s) 156, 1080, 1744
SfaNI GCATC 4 cut(s) 301, 914, 959, 964
SfcI CTRYAG 3 cut(s) 165, 598, 1002
Sfr274I CTCGAG 1 cut(s) 978
SfuI TTCGAA 1 cut(s) 2009
SinI GGWCC 3 cut(s) 89, 1031, 1082
SlaI CTCGAG 1 cut(s) 978
SmiMI CAYNNNNRTG 1 cut(s) 333
SmlI CTYRAG 3 cut(s) 141, 515, 978
SmoI CTYRAG 3 cut(s) 141, 515, 978
SphI GCATGC 1 cut(s) 590
SsiI CCGC 4 cut(s) 281, 911, 1187, 1252
SspMI CTAG 4 cut(s) 1232, 1283, 1487, 1902
StyD4I CCNGG 3 cut(s) 154, 1078, 1742
StyI CCWWGG 2 cut(s) 1314, 1588
TaaI ACNGT 3 cut(s) 763, 830, 1577
TaiI ACGT 1 cut(s) 1795
TaqI TCGA 3 cut(s) 525, 979, 2009
TatI WGTACW 2 cut(s) 249, 635
TauI GCSGC 2 cut(s) 1189, 1254
TfiI GAWTC 4 cut(s) 674, 1624, 1766, 1817
Tru1I TTAA 3 cut(s) 516, 561, 995
Tru9I TTAA 3 cut(s) 516, 561, 995
TscAI CASTG 4 cut(s) 222, 551, 807, 833
TseFI GTSAC 2 cut(s) 656, 1144
Tsp45I GTSAC 2 cut(s) 656, 1144
TspGWI ACGGA 2 cut(s) 321, 1154
TspRI CASTG 4 cut(s) 222, 551, 807, 833
Vha464I CTTAAG 1 cut(s) 515
VpaK11BI GGWCC 3 cut(s) 89, 1031, 1082
XapI RAATTY 2 cut(s) 271, 1879
XceI RCATGY 1 cut(s) 590
XhoI CTCGAG 1 cut(s) 978
XmiI GTMKAC 1 cut(s) 525
XspI CTAG 4 cut(s) 1232, 1283, 1487, 1902
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.