pycom07g05010

rRNA-processing protein fcf2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0006753
Physical Location & Seq
Forward (+)
4307619 .. 4309896
2278 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 864 bp
ATGGTCGCGTCTGATTTAATCTCAACCGTCCATCGTAAATTAGCTCTATCCCAGACTCTCCTCATCTCATTAACTCTCGATCTCTCCAACACTCCAACCCTCTTATCTCTCTCGAATCCGCGGCGGCGCTGCTCCGTCCACCTTCTCCGACGGATTCCGGCCAGCCACAAGCAAGCCACAGAGACAAGCACACGCACCCTGCTAGGCCTCTTCTTCGTCTTTCGAGTCCCAAAATCCAGGTGCTCTTTCGAGTTTCGGTTCCATAAATTGCGTTCTAGAATGGCTAAAAGCAAGGCGGCGATTGGGCTCTCGTGGGAGCCAAAGTTGCCGGCTTTTTCATCGGCCTCCAAAAATCGAGGTGGGTCTGGCTCCAAACCTCGCCCCGAAGCTAATCCGCTTTGGAAACCCAGCACGCAGCTTGTCGATGGCCTCTTCGTTCCGCCGAATGACCCGGTAAAGCGGAACAAATTGGCCAAGAAGCAGATCAAAGACACTGCTGGAACAAGCTGGTTTGACATGCCTGCACCAACCATGACCCCGGAATTGCAGAAAGATCTCCAATTACTCAAGTTAAGGAATGTTGTGGATCCAAAGAGACATTACAAAAAGGGGGATGCACAACCGAACAAGTATTTCCAGGTAGGGACAGTGATAGAGTTCCCATTAGATTTCTTCTCGAGCAGACTTACAAAGAAGGAAAGGAAGGTGTCCCTTGCAGAGGAAGTGCTTTCTGATCGTAACCTTGGCAACTACAGAAAGCGGAAGGTTCACGAGATAGAAGAGAAAAACCGGCCGGGTGGAAATGAAAAATGGAAGATAAAGGGAAAAGGGTCGTACCAGCGTGCAAAGCAACGAAGGCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fcf2

Protein Analysis

288

Amino Acids

32.75

Weight (kDa)

10.69

Isoelectric Point (pI)

51.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fcf2 PF08698 163 - 255 3.5e-35 Fcf2 pre-rRNA processing
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 8, 121
AciI CCGC 8 cut(s) 119, 121, 124, 296, 395, 440, 460, 760
AclWI GGATC 2 cut(s) 581, 594
AcoI YGGCCR 3 cut(s) 159, 471, 791
AfaI GTAC 1 cut(s) 836
AfiI CCNNNNNNNGG 1 cut(s) 718
AjnI CCWGG 2 cut(s) 236, 636
AluBI AGCT 4 cut(s) 44, 389, 418, 507
AluI AGCT 4 cut(s) 44, 389, 418, 507
Alw21I GWGCWC 1 cut(s) 245
Alw26I GTCTC 2 cut(s) 176, 589
AlwI GGATC 2 cut(s) 581, 594
Ama87I CYCGRG 1 cut(s) 676
AoxI GGCC 6 cut(s) 159, 205, 342, 427, 471, 791
ApeKI GCWGC 2 cut(s) 129, 415
AspLEI GCGC 1 cut(s) 129
AsuC2I CCSGG 3 cut(s) 452, 539, 795
AvaI CYCGRG 1 cut(s) 676
BalI TGGCCA 1 cut(s) 473
BamHI GGATCC 1 cut(s) 586
BanII GRGCYC 1 cut(s) 309
BauI CACGAG 2 cut(s) 310, 770
Bbv12I GWGCWC 1 cut(s) 245
BbvI GCAGC 2 cut(s) 116, 427
BccI CCATC 2 cut(s) 39, 419
BciT130I CCWGG 2 cut(s) 238, 638
BcnI CCSGG 3 cut(s) 452, 539, 795
BcoDI GTCTC 2 cut(s) 176, 589
BfaI CTAG 2 cut(s) 203, 276
BfmI CTRYAG 1 cut(s) 751
BfoI RGCGCY 1 cut(s) 130
BglII AGATCT 1 cut(s) 553
BisI GCNGC 5 cut(s) 122, 125, 130, 297, 416
BlsI GCNGC 5 cut(s) 123, 126, 131, 298, 417
Bme1390I CCNGG 5 cut(s) 238, 452, 539, 638, 795
BmeT110I CYCGRG 1 cut(s) 676
BmiI GGNNCC 4 cut(s) 260, 318, 370, 588
BmrFI CCNGG 5 cut(s) 238, 452, 539, 638, 795
BmsI GCATC 1 cut(s) 604
BpuEI CTTGAG 1 cut(s) 551
BpuMI CCSGG 3 cut(s) 452, 539, 795
BsaJI CCNNGG 3 cut(s) 119, 537, 742
BsaXI ACNNNNNCTCC 2 cut(s) 308, 338
Bsc4I CCNNNNNNNGG 1 cut(s) 718
Bse118I RCCGGY 2 cut(s) 328, 789
BseBI CCWGG 2 cut(s) 238, 638
BseDI CCNNGG 3 cut(s) 119, 537, 742
BseGI GGATG 1 cut(s) 619
BseLI CCNNNNNNNGG 1 cut(s) 718
BseRI GAGGAG 1 cut(s) 50
BseX3I CGGCCG 1 cut(s) 791
BseXI GCAGC 2 cut(s) 116, 427
BseYI CCCAGC 1 cut(s) 407
BsgI GTGCAG 1 cut(s) 507
Bsh1236I CGCG 2 cut(s) 8, 121
Bsh1285I CGRYCG 1 cut(s) 794
BshFI GGCC 6 cut(s) 161, 207, 344, 429, 473, 793
BsiEI CGRYCG 1 cut(s) 794
BsiHKAI GWGCWC 1 cut(s) 245
BsiHKCI CYCGRG 1 cut(s) 676
BsiSI CCGG 6 cut(s) 158, 329, 452, 539, 790, 794
BslFI GGGAC 3 cut(s) 212, 658, 694
BslI CCNNNNNNNGG 1 cut(s) 718
BsmAI GTCTC 2 cut(s) 176, 589
BsmFI GGGAC 3 cut(s) 212, 658, 694
BsnI GGCC 6 cut(s) 161, 207, 344, 429, 473, 793
BsoBI CYCGRG 1 cut(s) 676
Bsp1286I GDGCHC 2 cut(s) 245, 309
Bsp143I GATC 5 cut(s) 79, 483, 553, 586, 733
BspACI CCGC 8 cut(s) 119, 121, 124, 296, 395, 440, 460, 760
BspANI GGCC 6 cut(s) 161, 207, 344, 429, 473, 793
BspFNI CGCG 2 cut(s) 8, 121
BspLI GGNNCC 4 cut(s) 260, 318, 370, 588
BspPI GGATC 2 cut(s) 581, 594
BsrFI RCCGGY 2 cut(s) 328, 789
BssAI RCCGGY 2 cut(s) 328, 789
BssECI CCNNGG 3 cut(s) 119, 537, 742
BssMI GATC 5 cut(s) 79, 483, 553, 586, 733
BssSI CACGAG 2 cut(s) 310, 770
BssT1I CCWWGG 1 cut(s) 742
Bst2BI CACGAG 2 cut(s) 310, 770
Bst2UI CCWGG 2 cut(s) 238, 638
Bst4CI ACNGT 2 cut(s) 28, 649
Bst6I CTCTTC 3 cut(s) 215, 437, 774
BstC8I GCNNGC 6 cut(s) 163, 174, 330, 413, 522, 843
BstDSI CCRYGG 1 cut(s) 119
BstENI CCTNNNNNAGG 1 cut(s) 716
BstF5I GGATG 1 cut(s) 619
BstFNI CGCG 2 cut(s) 8, 121
BstH2I RGCGCY 1 cut(s) 130
BstHHI GCGC 1 cut(s) 129
BstKTI GATC 5 cut(s) 82, 486, 556, 589, 736
BstMAI GTCTC 2 cut(s) 176, 589
BstMBI GATC 5 cut(s) 79, 483, 553, 586, 733
BstMCI CGRYCG 1 cut(s) 794
BstMWI GCNNNNNNNGC 3 cut(s) 325, 847, 856
BstNI CCWGG 2 cut(s) 238, 638
BstNSI RCATGY 1 cut(s) 520
BstSCI CCNGG 5 cut(s) 236, 450, 537, 636, 793
BstSFI CTRYAG 1 cut(s) 751
BstUI CGCG 2 cut(s) 8, 121
BstV1I GCAGC 2 cut(s) 116, 427
BstX2I RGATCY 2 cut(s) 553, 586
BstYI RGATCY 2 cut(s) 553, 586
BstZI CGGCCG 1 cut(s) 791
BsuRI GGCC 6 cut(s) 161, 207, 344, 429, 473, 793
BtgI CCRYGG 1 cut(s) 119
BtsCI GGATG 1 cut(s) 619
BtsI GCAGTG 1 cut(s) 492
BtsIMutI CAGTG 3 cut(s) 492, 654, 859
Cac8I GCNNGC 6 cut(s) 163, 174, 330, 413, 522, 843
CfoI GCGC 1 cut(s) 129
Cfr10I RCCGGY 2 cut(s) 328, 789
Cfr42I CCGCGG 1 cut(s) 122
Csp6I GTAC 1 cut(s) 835
CviAII CATG 2 cut(s) 517, 532
CviQI GTAC 1 cut(s) 835
DpnI GATC 5 cut(s) 81, 485, 555, 588, 735
DpnII GATC 5 cut(s) 79, 483, 553, 586, 733
EaeI YGGCCR 3 cut(s) 159, 471, 791
EagI CGGCCG 1 cut(s) 791
Eam1104I CTCTTC 3 cut(s) 215, 437, 774
EarI CTCTTC 3 cut(s) 215, 437, 774
EciI GGCGGA 1 cut(s) 429
EclXI CGGCCG 1 cut(s) 791
Eco130I CCWWGG 1 cut(s) 742
Eco147I AGGCCT 1 cut(s) 207
Eco24I GRGCYC 1 cut(s) 309
Eco52I CGGCCG 1 cut(s) 791
Eco88I CYCGRG 1 cut(s) 676
EcoNI CCTNNNNNAGG 1 cut(s) 716
EcoRII CCWGG 2 cut(s) 236, 636
EcoT14I CCWWGG 1 cut(s) 742
EcoT38I GRGCYC 1 cut(s) 309
ErhI CCWWGG 1 cut(s) 742
FaeI CATG 2 cut(s) 520, 535
FaiI YATR 3 cut(s) 264, 518, 533
FaqI GGGAC 3 cut(s) 212, 658, 694
FatI CATG 2 cut(s) 516, 531
Fnu4HI GCNGC 5 cut(s) 122, 125, 130, 297, 416
FokI GGATG 1 cut(s) 626
FriOI GRGCYC 1 cut(s) 309
Fsp4HI GCNGC 5 cut(s) 122, 125, 130, 297, 416
FspBI CTAG 2 cut(s) 203, 276
GlaI GCGC 1 cut(s) 128
GluI GCNGC 5 cut(s) 122, 125, 130, 297, 416
GsaI CCCAGC 1 cut(s) 411
HaeII RGCGCY 1 cut(s) 130
HaeIII GGCC 6 cut(s) 161, 207, 344, 429, 473, 793
HapII CCGG 6 cut(s) 158, 329, 452, 539, 790, 794
HhaI GCGC 1 cut(s) 129
Hin1II CATG 2 cut(s) 520, 535
Hin6I GCGC 1 cut(s) 127
HinP1I GCGC 1 cut(s) 127
HinfI GANTC 4 cut(s) 55, 115, 154, 225
HpaII CCGG 6 cut(s) 158, 329, 452, 539, 790, 794
Hpy166II GTNNAC 2 cut(s) 139, 769
Hpy188I TCNGA 3 cut(s) 13, 149, 733
Hpy188III TCNNGA 5 cut(s) 77, 112, 276, 676, 770
Hpy8I GTNNAC 2 cut(s) 139, 769
Hpy99I CGWCG 1 cut(s) 153
HpyAV CCTTC 5 cut(s) 152, 688, 697, 757, 849
HpyCH4III ACNGT 2 cut(s) 28, 649
HpyCH4V TGCA 5 cut(s) 524, 547, 617, 716, 845
HpyF10VI GCNNNNNNNGC 3 cut(s) 325, 847, 856
Hsp92II CATG 2 cut(s) 520, 535
HspAI GCGC 1 cut(s) 127
KroI GCCGGC 1 cut(s) 328
KroNI GCCGGC 1 cut(s) 330
KspI CCGCGG 1 cut(s) 122
Kzo9I GATC 5 cut(s) 79, 483, 553, 586, 733
LmnI GCTCC 3 cut(s) 137, 316, 374
Lsp1109I GCAGC 2 cut(s) 116, 427
LweI GCATC 1 cut(s) 604
MaeI CTAG 2 cut(s) 203, 276
MaeIII GTNAC 1 cut(s) 737
MalI GATC 5 cut(s) 81, 485, 555, 588, 735
MboI GATC 5 cut(s) 79, 483, 553, 586, 733
MboII GAAGA 6 cut(s) 202, 205, 424, 664, 791, 826
MflI RGATCY 2 cut(s) 553, 586
MhlI GDGCHC 2 cut(s) 245, 309
MlsI TGGCCA 1 cut(s) 473
MluCI AATT 5 cut(s) 38, 266, 467, 542, 560
MluNI TGGCCA 1 cut(s) 473
MlyI GAGTC 2 cut(s) 49, 234
MmeI TCCRAC 3 cut(s) 111, 119, 172
MnlI CCTC 8 cut(s) 71, 110, 218, 350, 355, 387, 440, 712
Mox20I TGGCCA 1 cut(s) 473
MroNI GCCGGC 1 cut(s) 328
MscI TGGCCA 1 cut(s) 473
MseI TTAA 3 cut(s) 17, 71, 572
Msp20I TGGCCA 1 cut(s) 473
MspA1I CMGCKG 1 cut(s) 121
MspI CCGG 6 cut(s) 158, 329, 452, 539, 790, 794
MspR9I CCNGG 5 cut(s) 238, 452, 539, 638, 795
MvaI CCWGG 2 cut(s) 238, 638
MvnI CGCG 2 cut(s) 8, 121
MwoI GCNNNNNNNGC 3 cut(s) 325, 847, 856
NaeI GCCGGC 1 cut(s) 330
NciI CCSGG 3 cut(s) 452, 539, 795
NdeII GATC 5 cut(s) 79, 483, 553, 586, 733
NgoMIV GCCGGC 1 cut(s) 328
NlaIII CATG 2 cut(s) 520, 535
NlaIV GGNNCC 4 cut(s) 260, 318, 370, 588
NspI RCATGY 1 cut(s) 520
PaeR7I CTCGAG 1 cut(s) 676
PceI AGGCCT 1 cut(s) 207
PdiI GCCGGC 1 cut(s) 330
PfeI GAWTC 2 cut(s) 115, 154
PkrI GCNGC 5 cut(s) 123, 126, 131, 298, 417
PleI GAGTC 2 cut(s) 49, 233
PpsI GAGTC 2 cut(s) 49, 233
Psp6I CCWGG 2 cut(s) 236, 636
PspFI CCCAGC 1 cut(s) 407
PspGI CCWGG 2 cut(s) 236, 636
PspN4I GGNNCC 4 cut(s) 260, 318, 370, 588
PsuI RGATCY 2 cut(s) 553, 586
RsaI GTAC 1 cut(s) 836
RsaNI GTAC 1 cut(s) 835
SacII CCGCGG 1 cut(s) 122
SaqAI TTAA 3 cut(s) 17, 71, 572
SatI GCNGC 5 cut(s) 122, 125, 130, 297, 416
Sau3AI GATC 5 cut(s) 79, 483, 553, 586, 733
SchI GAGTC 2 cut(s) 49, 234
ScrFI CCNGG 5 cut(s) 238, 452, 539, 638, 795
SduI GDGCHC 2 cut(s) 245, 309
SfaNI GCATC 1 cut(s) 604
SfcI CTRYAG 1 cut(s) 751
Sfr274I CTCGAG 1 cut(s) 676
Sfr303I CCGCGG 1 cut(s) 122
SgrBI CCGCGG 1 cut(s) 122
SlaI CTCGAG 1 cut(s) 676
SmlI CTYRAG 2 cut(s) 566, 676
SmoI CTYRAG 2 cut(s) 566, 676
Sse9I AATT 5 cut(s) 38, 266, 467, 542, 560
SseBI AGGCCT 1 cut(s) 207
SsiI CCGC 8 cut(s) 119, 121, 124, 296, 395, 440, 460, 760
SspMI CTAG 2 cut(s) 203, 276
StuI AGGCCT 1 cut(s) 207
StyD4I CCNGG 5 cut(s) 236, 450, 537, 636, 793
StyI CCWWGG 1 cut(s) 742
TaaI ACNGT 2 cut(s) 28, 649
TaqI TCGA 7 cut(s) 78, 113, 223, 249, 355, 423, 677
TasI AATT 5 cut(s) 38, 266, 467, 542, 560
TauI GCSGC 3 cut(s) 124, 127, 299
TfiI GAWTC 2 cut(s) 115, 154
Tru1I TTAA 3 cut(s) 17, 71, 572
Tru9I TTAA 3 cut(s) 17, 71, 572
TscAI CASTG 2 cut(s) 499, 654
TseI GCWGC 2 cut(s) 129, 415
TspDTI ATGAA 2 cut(s) 327, 819
TspGWI ACGGA 2 cut(s) 124, 166
TspRI CASTG 2 cut(s) 499, 654
XagI CCTNNNNNAGG 1 cut(s) 716
XbaI TCTAGA 1 cut(s) 275
XceI RCATGY 1 cut(s) 520
XhoI CTCGAG 1 cut(s) 676
XspI CTAG 2 cut(s) 203, 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.