Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0004662

Physical Location & Seq

Genomic Coordinates Reverse (-)

7290363 .. 7290917

Gene Structure 555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGGCAGCTCTCAAAATTTCATCTTTTGCCACAGAAATAGAATTCTTTGCGTTTCAATCCTGTTCTTGGTTTCGAGCTCGACCCATCTGATATTTATGGCTGAAGGTGGTAGAACAATTTCAGGCAAGCTTACTGAGGCTGCTCCGGCGAGAATTCTAGAGGAAAATAGAGCAGGAATGGCGGTCAACGCACGTCAAATAGGATCAGCGCCGCCGAGGTGCGAGCGGATTTGCAGCGCTTGCGGGCGTTGCGTGGCGGTTCAGGTTCCAGTTGCTCCTCAAGGCAATAAAATGAGAAGCCATGGCGGCAGCTCCTCTACTTCTCCCAAGAATGTAGCTTACTCCAGAGGAGATGACATTACGAATTATAAGCCAATGAGCTGGAAATGCAAGTGTGGGAATTTGCTCTTCAATCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EPF

Protein Analysis

140

Amino Acids

14.99

Weight (kDa)

9.64

Isoelectric Point (pI)

53.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EPF	PF17181	67 - 139	6.4e-16	Epidermal patterning factor proteins

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37810
fragaria_vesca	FvH4_1g18570 FvH4_2g35090 FvH4_2g35090
malus_domestica	MD02G1193400.v1.1 MD08G1108300.v1.1 MD15G1088900.v1.1
prunus_persica	Prupe.1G442900_v2.0.a1 Prupe.6G213400_v2.0.a1 Prupe.6G213400_v2.0.a1
pyrus_communis	pycom02g15710 pycom08g09020 pycom15g08320
rosa_chinensis	RchiOBHm_Chr2g0109291 RchiOBHm_Chr6g0306881
rosa_laevigata	RLG00000010758 RLG00000017730
rosa_multiflora	Rmu_sc0000332.1_g000002
rosa_roxburghii	Rroxscaffold_2G00134340 Rroxscaffold_7G00161390
rosa_rugosa	Rorug02G0159200 Rorug06G0354000
rosa_samantha	Rh2AG210800 Rh2BG221100 Rh2CG213000 Rh2DG217000 Rh6AG465600 Rh6BG435200 Rh6CG480000 Rh6DG467000
rosa_wichuraiana	Rw6G040580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	369
AccBSI	CCGCTC	1 cut(s)	226
AciI	CCGC	6 cut(s)	182, 212, 226, 243, 257, 306
AclWI	GGATC	1 cut(s)	211
AcsI	RAATTY	4 cut(s)	16, 42, 153, 400
AcuI	CTGAAG	1 cut(s)	123
AfeI	AGCGCT	1 cut(s)	238
AfiI	CCNNNNNNNGG	1 cut(s)	67
AgsI	TTSAA	2 cut(s)	57, 412
AjiI	CACGTC	1 cut(s)	194
AluBI	AGCT	6 cut(s)	9, 78, 130, 312, 338, 381
AluI	AGCT	6 cut(s)	9, 78, 130, 312, 338, 381
Alw21I	GWGCWC	1 cut(s)	80
AlwI	GGATC	1 cut(s)	211
Aor51HI	AGCGCT	1 cut(s)	238
ApeKI	GCWGC	4 cut(s)	6, 140, 234, 309
ApoI	RAATTY	4 cut(s)	16, 42, 153, 400
Asp700I	GAANNNNTTC	1 cut(s)	118
AspLEI	GCGC	2 cut(s)	211, 239
BanII	GRGCYC	1 cut(s)	80
Bbv12I	GWGCWC	1 cut(s)	80
BbvI	GCAGC	4 cut(s)	18, 127, 246, 321
BccI	CCATC	1 cut(s)	93
BfaI	CTAG	1 cut(s)	158
BfoI	RGCGCY	2 cut(s)	212, 240
BglI	GCCNNNNNGGC	1 cut(s)	306
BisI	GCNGC	6 cut(s)	7, 141, 212, 235, 307, 310
BlsI	GCNGC	6 cut(s)	8, 142, 213, 236, 308, 311
BmgBI	CACGTC	1 cut(s)	194
BmiI	GGNNCC	1 cut(s)	267
BpmI	CTGGAG	1 cut(s)	328
BpuEI	CTTGAG	1 cut(s)	264
BsaJI	CCNNGG	2 cut(s)	215, 301
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
Bse1I	ACTGG	1 cut(s)	269
BseDI	CCNNGG	2 cut(s)	215, 301
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseMII	CTCAG	1 cut(s)	126
BseNI	ACTGG	1 cut(s)	269
BseRI	GAGGAG	3 cut(s)	267, 304, 363
BseXI	GCAGC	4 cut(s)	18, 127, 246, 321
BsiHKAI	GWGCWC	1 cut(s)	80
BsiSI	CCGG	1 cut(s)	146
BslI	CCNNNNNNNGG	1 cut(s)	67
Bsp1286I	GDGCHC	1 cut(s)	80
Bsp143I	GATC	1 cut(s)	203
Bsp19I	CCATGG	1 cut(s)	301
BspACI	CCGC	6 cut(s)	182, 212, 226, 243, 257, 306
BspCNI	CTCAG	1 cut(s)	127
BspLI	GGNNCC	1 cut(s)	267
BspPI	GGATC	1 cut(s)	211
BspQI	GCTCTTC	1 cut(s)	413
BsrBI	CCGCTC	1 cut(s)	226
BsrI	ACTGG	1 cut(s)	269
BssECI	CCNNGG	2 cut(s)	215, 301
BssMI	GATC	1 cut(s)	203
BssT1I	CCWWGG	1 cut(s)	301
Bst6I	CTCTTC	1 cut(s)	413
BstAPI	GCANNNNNTGC	1 cut(s)	240
BstC8I	GCNNGC	4 cut(s)	128, 224, 241, 245
BstDEI	CTNAG	1 cut(s)	135
BstDSI	CCRYGG	1 cut(s)	301
BstH2I	RGCGCY	2 cut(s)	212, 240
BstHHI	GCGC	2 cut(s)	211, 239
BstKTI	GATC	1 cut(s)	206
BstMBI	GATC	1 cut(s)	203
BstMWI	GCNNNNNNNGC	7 cut(s)	146, 179, 188, 240, 249, 306, 387
BstV1I	GCAGC	4 cut(s)	18, 127, 246, 321
BstXI	CCANNNNNNTGG	1 cut(s)	381
BtgI	CCRYGG	1 cut(s)	301
BtrI	CACGTC	1 cut(s)	194
Cac8I	GCNNGC	4 cut(s)	128, 224, 241, 245
CfoI	GCGC	2 cut(s)	211, 239
CviAII	CATG	1 cut(s)	302
DdeI	CTNAG	1 cut(s)	135
DpnI	GATC	1 cut(s)	205
DpnII	GATC	1 cut(s)	203
Eam1104I	CTCTTC	1 cut(s)	413
EarI	CTCTTC	1 cut(s)	413
Ecl136II	GAGCTC	1 cut(s)	78
Eco130I	CCWWGG	1 cut(s)	301
Eco24I	GRGCYC	1 cut(s)	80
Eco47III	AGCGCT	1 cut(s)	238
Eco53kI	GAGCTC	1 cut(s)	78
Eco57I	CTGAAG	1 cut(s)	123
EcoICRI	GAGCTC	1 cut(s)	78
EcoRI	GAATTC	2 cut(s)	42, 153
EcoT14I	CCWWGG	1 cut(s)	301
EcoT38I	GRGCYC	1 cut(s)	80
ErhI	CCWWGG	1 cut(s)	301
FaeI	CATG	1 cut(s)	305
FaiI	YATR	3 cut(s)	98, 303, 369
FatI	CATG	1 cut(s)	301
FauI	CCCGC	1 cut(s)	236
Fnu4HI	GCNGC	6 cut(s)	7, 141, 212, 235, 307, 310
FriOI	GRGCYC	1 cut(s)	80
Fsp4HI	GCNGC	6 cut(s)	7, 141, 212, 235, 307, 310
FspBI	CTAG	1 cut(s)	158
GlaI	GCGC	2 cut(s)	210, 238
GluI	GCNGC	6 cut(s)	7, 141, 212, 235, 307, 310
GsuI	CTGGAG	1 cut(s)	328
HaeII	RGCGCY	2 cut(s)	212, 240
HapII	CCGG	1 cut(s)	146
HhaI	GCGC	2 cut(s)	211, 239
Hin1II	CATG	1 cut(s)	305
Hin6I	GCGC	2 cut(s)	209, 237
HinP1I	GCGC	2 cut(s)	209, 237
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HindIII	AAGCTT	1 cut(s)	128
HpaII	CCGG	1 cut(s)	146
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188I	TCNGA	1 cut(s)	90
Hpy188III	TCNNGA	2 cut(s)	158, 345
Hpy8I	GTNNAC	1 cut(s)	187
HpyAV	CCTTC	1 cut(s)	98
HpyCH4IV	ACGT	1 cut(s)	193
HpyCH4V	TGCA	2 cut(s)	234, 390
HpyF10VI	GCNNNNNNNGC	7 cut(s)	146, 179, 188, 240, 249, 306, 387
HpyF3I	CTNAG	1 cut(s)	135
HpySE526I	ACGT	1 cut(s)	193
Hsp92II	CATG	1 cut(s)	305
HspAI	GCGC	2 cut(s)	209, 237
Kzo9I	GATC	1 cut(s)	203
LguI	GCTCTTC	1 cut(s)	413
LmnI	GCTCC	3 cut(s)	148, 280, 317
LpnPI	CCDG	8 cut(s)	74, 108, 159, 159, 248, 282, 358, 367
Lsp1109I	GCAGC	4 cut(s)	18, 127, 246, 321
MaeI	CTAG	1 cut(s)	158
MaeII	ACGT	1 cut(s)	193
MalI	GATC	1 cut(s)	205
MbiI	CCGCTC	1 cut(s)	226
MboI	GATC	1 cut(s)	203
MboII	GAAGA	1 cut(s)	400
MhlI	GDGCHC	1 cut(s)	80
MluCI	AATT	6 cut(s)	16, 42, 117, 153, 364, 400
MnlI	CCTC	6 cut(s)	130, 154, 210, 288, 325, 341
MroXI	GAANNNNTTC	1 cut(s)	118
MspI	CCGG	1 cut(s)	146
MwoI	GCNNNNNNNGC	7 cut(s)	146, 179, 188, 240, 249, 306, 387
NcoI	CCATGG	1 cut(s)	301
NdeII	GATC	1 cut(s)	203
NlaIII	CATG	1 cut(s)	305
NlaIV	GGNNCC	1 cut(s)	267
NmeAIII	GCCGAG	1 cut(s)	240
PciSI	GCTCTTC	1 cut(s)	413
PdmI	GAANNNNTTC	1 cut(s)	118
PkrI	GCNGC	6 cut(s)	8, 142, 213, 236, 308, 311
PsiI	TTATAA	1 cut(s)	369
Psp124BI	GAGCTC	1 cut(s)	80
PspN4I	GGNNCC	1 cut(s)	267
SacI	GAGCTC	1 cut(s)	80
SapI	GCTCTTC	1 cut(s)	413
SatI	GCNGC	6 cut(s)	7, 141, 212, 235, 307, 310
Sau3AI	GATC	1 cut(s)	203
SduI	GDGCHC	1 cut(s)	80
SmlI	CTYRAG	1 cut(s)	279
SmoI	CTYRAG	1 cut(s)	279
Sse9I	AATT	6 cut(s)	16, 42, 117, 153, 364, 400
SsiI	CCGC	6 cut(s)	182, 212, 226, 243, 257, 306
SspMI	CTAG	1 cut(s)	158
SstI	GAGCTC	1 cut(s)	80
StyI	CCWWGG	1 cut(s)	301
TaiI	ACGT	1 cut(s)	196
TaqI	TCGA	2 cut(s)	74, 80
TasI	AATT	6 cut(s)	16, 42, 117, 153, 364, 400
TauI	GCSGC	2 cut(s)	214, 309
TseI	GCWGC	4 cut(s)	6, 140, 234, 309
TspDTI	ATGAA	1 cut(s)	10
XapI	RAATTY	4 cut(s)	16, 42, 153, 400
XbaI	TCTAGA	1 cut(s)	157
XmnI	GAANNNNTTC	1 cut(s)	118
XspI	CTAG	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.