pycom08g09540

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0003090
Physical Location & Seq
Reverse (-)
7858874 .. 7860005
1132 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 903 bp
ATGAAGCAGATGGAGGCTGACAAAAAATTTGTTACTACAGACCCTCGGAAAGCCCACCTGTACTACTTGCCTTTTAGCTCTCTAATGTTAGAGGAAACTTTATATGTTCCCGATTCACACAGTTATACGAATCTTGTGCAATACTTGAAGAACTACGTGGACACAATTGCGGTTAAATATCCTTTCTGGAATCGAACTGGAGGAGCTGATCATTTTTTTGTTGCTTGCCATGATTGGGCCCCAACAGAAACAAAGAAATACATGGCTAGGTGTATCAGAGCCCTCTGCAATGCTGATGTCAAAGAAGGTTTTGTATTTGGCAAAGATGTGTCTCTTCCTGAAACCTACGTCCACACAGCGAAGAATCCCCTCAGAAATATTGGAGGCAATCGTCCTTCCAAGAGGCCAATACTTGCTTTCTTTGCCGGGAATCTCCATGGTTACGTTAGGCCAATTCTGTTGCAGCACTGGGAAAACAAAGACCCCGACATGAAGATCTTTGGCCGGTTGCCTAAGGGGAAGGGTAATAAGAACTACGCGCATCATATGCAGAGCAGCAAGTACTGCATTTGTGCAAAAGGTTACGAAGTGAACAGTCCGCGAGTGGTTGAAGCCATTTTCTATGAGTGTGTTCCGGTGATTATATCAGATAACTTTGTGCCTCCGTTTTTCGAAGTTCTGAATTGGGAGTCGTTTGCGGTATTTGTTTTGGAGAAAGATATTCCGAATTTGAAGAACATACTCCTTTCGATCCCGGAGAATAGATATCTTCTGATGCAAATGAGGGTGAGAAAGGTGCAACAACATTTTCTGTGGCATGCTAAGCCTGAAAAGTATGATATTTTTCATATGATACTGCACTCTATTTGGCACAATAGACTCCATCAAATAAAACCCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

301

Amino Acids

35.22

Weight (kDa)

9.31

Isoelectric Point (pI)

39.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 7 - 249 3.9e-62 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 539, 601
AciI CCGC 3 cut(s) 170, 599, 698
AclWI GGATC 1 cut(s) 745
AcoI YGGCCR 1 cut(s) 502
AcsI RAATTY 2 cut(s) 26, 727
AfaI GTAC 2 cut(s) 62, 563
AfiI CCNNNNNNNGG 1 cut(s) 235
AgsI TTSAA 3 cut(s) 148, 611, 733
AluBI AGCT 2 cut(s) 78, 206
AluI AGCT 2 cut(s) 78, 206
Alw26I GTCTC 1 cut(s) 336
AlwI GGATC 1 cut(s) 745
AoxI GGCC 4 cut(s) 237, 404, 449, 502
ApaI GGGCCC 1 cut(s) 241
ApeKI GCWGC 2 cut(s) 463, 555
ApoI RAATTY 2 cut(s) 26, 727
ArsI GACNNNNNNTTYG 2 cut(s) 11, 43
AspLEI GCGC 1 cut(s) 541
AspS9I GGNCC 2 cut(s) 237, 238
AsuC2I CCSGG 2 cut(s) 427, 755
AsuHPI GGTGA 2 cut(s) 649, 799
AsuII TTCGAA 1 cut(s) 672
AxyI CCTNAGG 1 cut(s) 513
BaeGI GKGCMC 1 cut(s) 241
BanII GRGCYC 2 cut(s) 241, 283
BbvI GCAGC 2 cut(s) 475, 567
BccI CCATC 2 cut(s) 4, 891
BcgI CGANNNNNNTGC 2 cut(s) 118, 152
BclI TGATCA 1 cut(s) 208
BcnI CCSGG 2 cut(s) 427, 755
BcoDI GTCTC 1 cut(s) 336
BfaI CTAG 1 cut(s) 267
BfmI CTRYAG 1 cut(s) 36
BglII AGATCT 1 cut(s) 495
BisI GCNGC 2 cut(s) 464, 556
BlpI GCTNAGC 1 cut(s) 822
BlsI GCNGC 2 cut(s) 465, 557
BmcAI AGTACT 1 cut(s) 563
Bme1390I CCNGG 2 cut(s) 427, 755
BmgT120I GGNCC 2 cut(s) 237, 238
BmiI GGNNCC 2 cut(s) 239, 240
BmrFI CCNGG 2 cut(s) 427, 755
BmrI ACTGGG 1 cut(s) 478
BmsI GCATC 2 cut(s) 550, 765
BmuI ACTGGG 1 cut(s) 478
BpmI CTGGAG 1 cut(s) 219
Bpu1102I GCTNAGC 1 cut(s) 822
Bpu14I TTCGAA 1 cut(s) 672
BpuMI CCSGG 2 cut(s) 427, 755
BsaAI YACGTR 1 cut(s) 157
BsaJI CCNNGG 2 cut(s) 44, 436
BsaWI WCCGGW 1 cut(s) 634
Bsc4I CCNNNNNNNGG 1 cut(s) 235
Bse118I RCCGGY 1 cut(s) 504
Bse1I ACTGG 2 cut(s) 202, 473
Bse21I CCTNAGG 1 cut(s) 513
Bse3DI GCAATG 1 cut(s) 295
BseDI CCNNGG 2 cut(s) 44, 436
BseLI CCNNNNNNNGG 1 cut(s) 235
BseMI GCAATG 1 cut(s) 295
BseMII CTCAG 1 cut(s) 385
BseNI ACTGG 2 cut(s) 202, 473
BseRI GAGGAG 1 cut(s) 216
BseSI GKGCMC 1 cut(s) 241
BseXI GCAGC 2 cut(s) 475, 567
BsgI GTGCAG 1 cut(s) 842
Bsh1236I CGCG 2 cut(s) 539, 601
BshFI GGCC 4 cut(s) 239, 406, 451, 504
BsiSI CCGG 4 cut(s) 426, 505, 635, 755
BslI CCNNNNNNNGG 1 cut(s) 235
BsmAI GTCTC 1 cut(s) 336
BsnI GGCC 4 cut(s) 239, 406, 451, 504
Bsp119I TTCGAA 1 cut(s) 672
Bsp120I GGGCCC 1 cut(s) 237
Bsp1286I GDGCHC 2 cut(s) 241, 283
Bsp143I GATC 3 cut(s) 208, 495, 750
Bsp1720I GCTNAGC 1 cut(s) 822
Bsp19I CCATGG 1 cut(s) 436
BspACI CCGC 3 cut(s) 170, 599, 698
BspANI GGCC 4 cut(s) 239, 406, 451, 504
BspCNI CTCAG 1 cut(s) 384
BspFNI CGCG 2 cut(s) 539, 601
BspLI GGNNCC 2 cut(s) 239, 240
BspPI GGATC 1 cut(s) 745
BspT104I TTCGAA 1 cut(s) 672
BsrDI GCAATG 1 cut(s) 295
BsrFI RCCGGY 1 cut(s) 504
BsrI ACTGG 2 cut(s) 202, 473
BssAI RCCGGY 1 cut(s) 504
BssECI CCNNGG 2 cut(s) 44, 436
BssMI GATC 3 cut(s) 208, 495, 750
BssT1I CCWWGG 1 cut(s) 436
Bst4CI ACNGT 2 cut(s) 122, 596
Bst6I CTCTTC 1 cut(s) 339
BstAPI GCANNNNNTGC 2 cut(s) 547, 564
BstBAI YACGTR 1 cut(s) 157
BstBI TTCGAA 1 cut(s) 672
BstC8I GCNNGC 2 cut(s) 226, 819
BstDEI CTNAG 3 cut(s) 371, 513, 822
BstDSI CCRYGG 1 cut(s) 436
BstFNI CGCG 2 cut(s) 539, 601
BstHHI GCGC 1 cut(s) 541
BstKTI GATC 3 cut(s) 211, 498, 753
BstMAI GTCTC 1 cut(s) 336
BstMBI GATC 3 cut(s) 208, 495, 750
BstMWI GCNNNNNNNGC 4 cut(s) 422, 547, 564, 823
BstNSI RCATGY 1 cut(s) 821
BstSCI CCNGG 2 cut(s) 425, 753
BstSFI CTRYAG 1 cut(s) 36
BstSLI GKGCMC 1 cut(s) 241
BstUI CGCG 2 cut(s) 539, 601
BstV1I GCAGC 2 cut(s) 475, 567
BstX2I RGATCY 1 cut(s) 495
BstYI RGATCY 1 cut(s) 495
Bsu36I CCTNAGG 1 cut(s) 513
BsuRI GGCC 4 cut(s) 239, 406, 451, 504
BtgI CCRYGG 1 cut(s) 436
BtsIMutI CAGTG 1 cut(s) 466
Cac8I GCNNGC 2 cut(s) 226, 819
CfoI GCGC 1 cut(s) 541
Cfr10I RCCGGY 1 cut(s) 504
Cfr13I GGNCC 2 cut(s) 237, 238
Csp6I GTAC 2 cut(s) 61, 562
CviAII CATG 5 cut(s) 230, 262, 437, 490, 818
CviQI GTAC 2 cut(s) 61, 562
DdeI CTNAG 3 cut(s) 371, 513, 822
DpnI GATC 3 cut(s) 210, 497, 752
DpnII GATC 3 cut(s) 208, 495, 750
EaeI YGGCCR 1 cut(s) 502
Eam1104I CTCTTC 1 cut(s) 339
EarI CTCTTC 1 cut(s) 339
Eco130I CCWWGG 1 cut(s) 436
Eco24I GRGCYC 2 cut(s) 241, 283
Eco32I GATATC 1 cut(s) 767
Eco81I CCTNAGG 1 cut(s) 513
EcoO109I RGGNCCY 1 cut(s) 238
EcoRV GATATC 1 cut(s) 767
EcoT14I CCWWGG 1 cut(s) 436
EcoT38I GRGCYC 2 cut(s) 241, 283
ErhI CCWWGG 1 cut(s) 436
FaeI CATG 5 cut(s) 233, 265, 440, 493, 821
FatI CATG 5 cut(s) 229, 261, 436, 489, 817
FauNDI CATATG 2 cut(s) 546, 849
FbaI TGATCA 1 cut(s) 208
Fnu4HI GCNGC 2 cut(s) 464, 556
FriOI GRGCYC 2 cut(s) 241, 283
Fsp4HI GCNGC 2 cut(s) 464, 556
FspBI CTAG 1 cut(s) 267
GlaI GCGC 1 cut(s) 540
GluI GCNGC 2 cut(s) 464, 556
GsuI CTGGAG 1 cut(s) 219
HaeIII GGCC 4 cut(s) 239, 406, 451, 504
HapII CCGG 4 cut(s) 426, 505, 635, 755
HhaI GCGC 1 cut(s) 541
Hin1II CATG 5 cut(s) 233, 265, 440, 493, 821
Hin6I GCGC 1 cut(s) 539
HinP1I GCGC 1 cut(s) 539
HinfI GANTC 7 cut(s) 113, 130, 190, 364, 430, 689, 879
HpaII CCGG 4 cut(s) 426, 505, 635, 755
HphI GGTGA 2 cut(s) 649, 799
Hpy166II GTNNAC 3 cut(s) 160, 352, 592
Hpy188I TCNGA 7 cut(s) 48, 278, 374, 649, 681, 726, 774
Hpy188III TCNNGA 3 cut(s) 110, 187, 338
Hpy8I GTNNAC 3 cut(s) 160, 352, 592
HpyAV CCTTC 3 cut(s) 299, 405, 514
HpyCH4III ACNGT 2 cut(s) 122, 596
HpyCH4IV ACGT 3 cut(s) 156, 348, 444
HpyCH4V TGCA 9 cut(s) 139, 288, 463, 550, 567, 575, 778, 799, 859
HpyF10VI GCNNNNNNNGC 4 cut(s) 422, 547, 564, 823
HpyF3I CTNAG 3 cut(s) 371, 513, 822
HpySE526I ACGT 3 cut(s) 156, 348, 444
Hsp92II CATG 5 cut(s) 233, 265, 440, 493, 821
HspAI GCGC 1 cut(s) 539
Ksp22I TGATCA 1 cut(s) 208
Kzo9I GATC 3 cut(s) 208, 495, 750
LmnI GCTCC 1 cut(s) 203
Lsp1109I GCAGC 2 cut(s) 475, 567
LweI GCATC 2 cut(s) 550, 765
MaeI CTAG 1 cut(s) 267
MaeII ACGT 3 cut(s) 156, 348, 444
MaeIII GTNAC 3 cut(s) 31, 440, 581
MalI GATC 3 cut(s) 210, 497, 752
MboI GATC 3 cut(s) 208, 495, 750
MboII GAAGA 6 cut(s) 160, 326, 373, 505, 745, 761
MfeI CAATTG 1 cut(s) 165
MflI RGATCY 1 cut(s) 495
MhlI GDGCHC 2 cut(s) 241, 283
MluCI AATT 5 cut(s) 26, 165, 453, 682, 727
MlyI GAGTC 2 cut(s) 698, 873
MseI TTAA 1 cut(s) 174
MspI CCGG 4 cut(s) 426, 505, 635, 755
MspR9I CCNGG 2 cut(s) 427, 755
MunI CAATTG 1 cut(s) 165
MvnI CGCG 2 cut(s) 539, 601
MwoI GCNNNNNNNGC 4 cut(s) 422, 547, 564, 823
NciI CCSGG 2 cut(s) 427, 755
NcoI CCATGG 1 cut(s) 436
NdeI CATATG 2 cut(s) 546, 849
NdeII GATC 3 cut(s) 208, 495, 750
NlaIII CATG 5 cut(s) 233, 265, 440, 493, 821
NlaIV GGNNCC 2 cut(s) 239, 240
NspI RCATGY 1 cut(s) 821
NspV TTCGAA 1 cut(s) 672
PaeI GCATGC 1 cut(s) 821
PfeI GAWTC 5 cut(s) 113, 130, 190, 364, 430
PfoI TCCNGGA 1 cut(s) 753
PkrI GCNGC 2 cut(s) 465, 557
PleI GAGTC 2 cut(s) 697, 873
PpsI GAGTC 2 cut(s) 697, 873
Ppu21I YACGTR 1 cut(s) 157
PspN4I GGNNCC 2 cut(s) 239, 240
PspOMI GGGCCC 1 cut(s) 237
PspPI GGNCC 2 cut(s) 237, 238
PsuI RGATCY 1 cut(s) 495
RsaI GTAC 2 cut(s) 62, 563
RsaNI GTAC 2 cut(s) 61, 562
SaqAI TTAA 1 cut(s) 174
SatI GCNGC 2 cut(s) 464, 556
Sau3AI GATC 3 cut(s) 208, 495, 750
Sau96I GGNCC 2 cut(s) 237, 238
ScaI AGTACT 1 cut(s) 563
SchI GAGTC 2 cut(s) 698, 873
ScrFI CCNGG 2 cut(s) 427, 755
SduI GDGCHC 2 cut(s) 241, 283
SfaNI GCATC 2 cut(s) 550, 765
SfcI CTRYAG 1 cut(s) 36
SfuI TTCGAA 1 cut(s) 672
SphI GCATGC 1 cut(s) 821
Sse9I AATT 5 cut(s) 26, 165, 453, 682, 727
SsiI CCGC 3 cut(s) 170, 599, 698
SspI AATATT 1 cut(s) 379
SspMI CTAG 1 cut(s) 267
StyD4I CCNGG 2 cut(s) 425, 753
StyI CCWWGG 1 cut(s) 436
TaaI ACNGT 2 cut(s) 122, 596
TaiI ACGT 3 cut(s) 159, 351, 447
TaqI TCGA 3 cut(s) 193, 672, 749
TasI AATT 5 cut(s) 26, 165, 453, 682, 727
TatI WGTACW 2 cut(s) 60, 561
TfiI GAWTC 5 cut(s) 113, 130, 190, 364, 430
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
TscAI CASTG 1 cut(s) 473
TseI GCWGC 2 cut(s) 463, 555
TspDTI ATGAA 3 cut(s) 17, 506, 836
TspGWI ACGGA 1 cut(s) 654
TspRI CASTG 1 cut(s) 473
XapI RAATTY 2 cut(s) 26, 727
XceI RCATGY 1 cut(s) 821
XspI CTAG 1 cut(s) 267
ZrmI AGTACT 1 cut(s) 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.