Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0006365

Physical Location & Seq

Genomic Coordinates Forward (+)

16161486 .. 16162370

Gene Structure 885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGCTTCCTTTGCAAAACCACTTCCATTTTTCTTCCTTCTGGTGCTAGTTTGCTCTTCCTTTATACACATCATTCATGCTAGACAGAGCGTGTCCTTCAGCAAGGTCACCCACAACGACAACAACAACAACAACAACGATAATTATGTTATGGAGGCGGAGGCCGAAGCACCAACTCCAGCACTACAAGTAGTAGCAGAGGCACCGGAACTAGTACCAACACCGGCACCGACACCAAGTTACACCGAAAGAGACCATGGCAGCAACAGCGCCCTGTATGGTCTTGGCTCGACCAATTCCCCTTCCACGAAGGAGACTCCAACCACAATTACTGATGTTGAAGATCAAATTTTGAGTGAAGAACTTAGCGGTGAAAGTTTTGATCATCCGAAAGGTAATTACCAAAGCACCAACTTGTACAACAAGGACAACATTAATCAGGACACTGGCTACACCGGCAACAGCTACTATGTCAAAAACTACGATGGCAGAGGAGGCTACAACCGCAATCCCCCGGGTGGAGGCAATGGGATTAGTGAACAGCAAGGGATTAGTAATCAGGACATTGGCTACACCGGCAACAGTTACTACGTCAAAAACTACGATGGCAGAGGAGGCTACAACCGCAATCCCCCGGGTGGAGGCAATGAGATTAGTGAACAGCAAGGGATGAGTGATACAAGGTTTCTGGAAAATGGTAAATACTATCATGATGTGAAGAATGAGATTAAAAATAATAATTTCAATGGTAACTACGAATCAGATGGGAGAGGAAGTAACAGAAATGATGTTGAGCGCTACTATGGCAACAGTCACAGCTCCAATGAGTTCAACACCATGGAGGAGTATGATAAGTACCAGAAGACCCAAGGATATGTGCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

295

Amino Acids

32.66

Weight (kDa)

4.83

Isoelectric Point (pI)

39.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03820
fragaria_vesca	FvH4_2g19240 FvH4_6g18310 FvH4_6g26650
malus_domestica	MD09G1241900.v1.1
prunus_persica	Prupe.3G134900_v2.0.a1
pyrus_communis	pycom09g16050
rosa_laevigata	RLG00000018973 RLG00000024057
rosa_multiflora	Rmu_sc0005608.1_g000022 Rmu_ssc0000018.1_g000064
rosa_roxburghii	Rroxscaffold_2G00116280 Rroxscaffold_6G00408620
rosa_rugosa	Rorug02G0276200 Rorug03G0127800
rosa_samantha	Rh2AG327000 Rh2BG337300 Rh2BG337400 Rh2CG314400 Rh2DG354400 Rh3BG206300 Rh3CG203400 Rh3CG221700 Rh3DG169400
rosa_wichuraiana	Rw0G004980 Rw2G026520 Rw2G026560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	202, 226
AciI	CCGC	4 cut(s)	158, 369, 505, 625
AcsI	RAATTY	1 cut(s)	348
AcuI	CTGAAG	1 cut(s)	82
AfaI	GTAC	3 cut(s)	216, 419, 857
AfeI	AGCGCT	1 cut(s)	797
AfiI	CCNNNNNNNGG	4 cut(s)	518, 521, 638, 641
AgsI	TTSAA	3 cut(s)	341, 745, 832
AhlI	ACTAGT	1 cut(s)	211
AluBI	AGCT	2 cut(s)	465, 819
AluI	AGCT	2 cut(s)	465, 819
Alw26I	GTCTC	2 cut(s)	246, 308
Ama87I	CYCGRG	2 cut(s)	514, 634
Aor51HI	AGCGCT	1 cut(s)	797
AoxI	GGCC	1 cut(s)	162
ApeKI	GCWGC	1 cut(s)	261
ApoI	RAATTY	1 cut(s)	348
AseI	ATTAAT	1 cut(s)	435
AspLEI	GCGC	2 cut(s)	272, 798
AsuC2I	CCSGG	4 cut(s)	515, 516, 635, 636
AsuHPI	GGTGA	2 cut(s)	100, 383
AvaI	CYCGRG	2 cut(s)	514, 634
BaeGI	GKGCMC	1 cut(s)	882
BanI	GGYRCC	2 cut(s)	202, 226
BbsI	GAAGAC	1 cut(s)	869
BbvI	GCAGC	1 cut(s)	273
BccI	CCATC	3 cut(s)	479, 599, 758
BclI	TGATCA	1 cut(s)	382
BcnI	CCSGG	4 cut(s)	515, 516, 635, 636
BcoDI	GTCTC	2 cut(s)	246, 308
BcuI	ACTAGT	1 cut(s)	211
BfaI	CTAG	3 cut(s)	47, 81, 212
BfoI	RGCGCY	2 cut(s)	273, 799
BisI	GCNGC	1 cut(s)	262
BlsI	GCNGC	1 cut(s)	263
Bme1390I	CCNGG	4 cut(s)	515, 516, 635, 636
BmeT110I	CYCGRG	2 cut(s)	514, 634
BmiI	GGNNCC	2 cut(s)	204, 228
BmrFI	CCNGG	4 cut(s)	515, 516, 635, 636
BpiI	GAAGAC	1 cut(s)	869
BpmI	CTGGAG	1 cut(s)	162
BpuMI	CCSGG	4 cut(s)	515, 516, 635, 636
BsaI	GGTCTC	1 cut(s)	246
BsaJI	CCNNGG	7 cut(s)	256, 513, 514, 633, 634, 837, 868
BsaWI	WCCGGW	1 cut(s)	205
BsaXI	ACNNNNNCTCC	2 cut(s)	760, 790
Bsc4I	CCNNNNNNNGG	4 cut(s)	518, 521, 638, 641
Bse118I	RCCGGY	3 cut(s)	223, 455, 575
Bse1I	ACTGG	1 cut(s)	451
Bse3DI	GCAATG	2 cut(s)	532, 652
BseDI	CCNNGG	7 cut(s)	256, 513, 514, 633, 634, 837, 868
BseGI	GGATG	2 cut(s)	385, 675
BseLI	CCNNNNNNNGG	4 cut(s)	518, 521, 638, 641
BseMI	GCAATG	2 cut(s)	532, 652
BseNI	ACTGG	1 cut(s)	451
BseRI	GAGGAG	3 cut(s)	507, 627, 857
BseSI	GKGCMC	1 cut(s)	882
BseXI	GCAGC	1 cut(s)	273
BshFI	GGCC	1 cut(s)	164
BshNI	GGYRCC	2 cut(s)	202, 226
BsiHKCI	CYCGRG	2 cut(s)	514, 634
BsiSI	CCGG	6 cut(s)	206, 224, 456, 515, 576, 635
BslI	CCNNNNNNNGG	4 cut(s)	518, 521, 638, 641
BsmAI	GTCTC	2 cut(s)	246, 308
BsnI	GGCC	1 cut(s)	164
Bso31I	GGTCTC	1 cut(s)	246
BsoBI	CYCGRG	2 cut(s)	514, 634
Bsp1286I	GDGCHC	1 cut(s)	882
Bsp1407I	TGTACA	1 cut(s)	417
Bsp143I	GATC	2 cut(s)	343, 382
Bsp19I	CCATGG	2 cut(s)	256, 837
BspACI	CCGC	4 cut(s)	158, 369, 505, 625
BspANI	GGCC	1 cut(s)	164
BspHI	TCATGA	1 cut(s)	709
BspLI	GGNNCC	2 cut(s)	204, 228
BspQI	GCTCTTC	1 cut(s)	61
BspT107I	GGYRCC	2 cut(s)	202, 226
BspTNI	GGTCTC	1 cut(s)	246
BsrDI	GCAATG	2 cut(s)	532, 652
BsrFI	RCCGGY	3 cut(s)	223, 455, 575
BsrGI	TGTACA	1 cut(s)	417
BsrI	ACTGG	1 cut(s)	451
BssAI	RCCGGY	3 cut(s)	223, 455, 575
BssECI	CCNNGG	7 cut(s)	256, 513, 514, 633, 634, 837, 868
BssMI	GATC	2 cut(s)	343, 382
BssT1I	CCWWGG	3 cut(s)	256, 837, 868
Bst4CI	ACNGT	2 cut(s)	584, 812
Bst6I	CTCTTC	1 cut(s)	61
BstAUI	TGTACA	1 cut(s)	417
BstDEI	CTNAG	1 cut(s)	365
BstDSI	CCRYGG	2 cut(s)	256, 837
BstEII	GGTNACC	1 cut(s)	106
BstF5I	GGATG	2 cut(s)	385, 675
BstH2I	RGCGCY	2 cut(s)	273, 799
BstHHI	GCGC	2 cut(s)	272, 798
BstKTI	GATC	2 cut(s)	346, 385
BstMAI	GTCTC	2 cut(s)	246, 308
BstMBI	GATC	2 cut(s)	343, 382
BstMWI	GCNNNNNNNGC	9 cut(s)	11, 267, 456, 495, 504, 576, 615, 624, 804
BstPI	GGTNACC	1 cut(s)	106
BstSCI	CCNGG	4 cut(s)	513, 514, 633, 634
BstSLI	GKGCMC	1 cut(s)	882
BstV1I	GCAGC	1 cut(s)	273
BstV2I	GAAGAC	1 cut(s)	869
BsuRI	GGCC	1 cut(s)	164
BtgI	CCRYGG	2 cut(s)	256, 837
BtsCI	GGATG	2 cut(s)	385, 675
BtsIMutI	CAGTG	1 cut(s)	444
CciI	TCATGA	1 cut(s)	709
CfoI	GCGC	2 cut(s)	272, 798
Cfr10I	RCCGGY	3 cut(s)	223, 455, 575
Cfr9I	CCCGGG	2 cut(s)	514, 634
Csp6I	GTAC	3 cut(s)	215, 418, 856
CviAII	CATG	4 cut(s)	77, 257, 710, 838
CviJI	RGCY	9 cut(s)	5, 164, 288, 450, 465, 498, 570, 618, 819
CviKI_1	RGCY	9 cut(s)	5, 164, 288, 450, 465, 498, 570, 618, 819
CviQI	GTAC	3 cut(s)	215, 418, 856
DdeI	CTNAG	1 cut(s)	365
DpnI	GATC	2 cut(s)	345, 384
DpnII	GATC	2 cut(s)	343, 382
Eam1104I	CTCTTC	1 cut(s)	61
EarI	CTCTTC	1 cut(s)	61
EciI	GGCGGA	1 cut(s)	173
Eco130I	CCWWGG	3 cut(s)	256, 837, 868
Eco31I	GGTCTC	1 cut(s)	246
Eco47III	AGCGCT	1 cut(s)	797
Eco57I	CTGAAG	1 cut(s)	82
Eco88I	CYCGRG	2 cut(s)	514, 634
Eco91I	GGTNACC	1 cut(s)	106
EcoO65I	GGTNACC	1 cut(s)	106
EcoT14I	CCWWGG	3 cut(s)	256, 837, 868
ErhI	CCWWGG	3 cut(s)	256, 837, 868
FaeI	CATG	4 cut(s)	80, 260, 713, 841
FatI	CATG	4 cut(s)	76, 256, 709, 837
FbaI	TGATCA	1 cut(s)	382
Fnu4HI	GCNGC	1 cut(s)	262
FokI	GGATG	2 cut(s)	372, 682
Fsp4HI	GCNGC	1 cut(s)	262
FspBI	CTAG	3 cut(s)	47, 81, 212
GlaI	GCGC	2 cut(s)	271, 797
GluI	GCNGC	1 cut(s)	262
GsuI	CTGGAG	1 cut(s)	162
HaeII	RGCGCY	2 cut(s)	273, 799
HaeIII	GGCC	1 cut(s)	164
HapII	CCGG	6 cut(s)	206, 224, 456, 515, 576, 635
HhaI	GCGC	2 cut(s)	272, 798
Hin1II	CATG	4 cut(s)	80, 260, 713, 841
Hin6I	GCGC	2 cut(s)	270, 796
HinP1I	GCGC	2 cut(s)	270, 796
HinfI	GANTC	2 cut(s)	316, 758
HpaII	CCGG	6 cut(s)	206, 224, 456, 515, 576, 635
HphI	GGTGA	2 cut(s)	100, 383
Hpy166II	GTNNAC	2 cut(s)	539, 659
Hpy188I	TCNGA	2 cut(s)	390, 763
Hpy188III	TCNNGA	4 cut(s)	440, 560, 689, 710
Hpy8I	GTNNAC	2 cut(s)	539, 659
HpyAV	CCTTC	4 cut(s)	47, 106, 304, 312
HpyCH4III	ACNGT	2 cut(s)	584, 812
HpyCH4IV	ACGT	1 cut(s)	591
HpyCH4V	TGCA	1 cut(s)	14
HpyF10VI	GCNNNNNNNGC	9 cut(s)	11, 267, 456, 495, 504, 576, 615, 624, 804
HpyF3I	CTNAG	1 cut(s)	365
HpySE526I	ACGT	1 cut(s)	591
Hsp92II	CATG	4 cut(s)	80, 260, 713, 841
HspAI	GCGC	2 cut(s)	270, 796
Ksp22I	TGATCA	1 cut(s)	382
Kzo9I	GATC	2 cut(s)	343, 382
LguI	GCTCTTC	1 cut(s)	61
LmnI	GCTCC	1 cut(s)	824
Lsp1109I	GCAGC	1 cut(s)	273
MaeI	CTAG	3 cut(s)	47, 81, 212
MaeII	ACGT	1 cut(s)	591
MaeIII	GTNAC	6 cut(s)	106, 239, 584, 749, 776, 812
MalI	GATC	2 cut(s)	345, 384
MboI	GATC	2 cut(s)	343, 382
MboII	GAAGA	6 cut(s)	25, 48, 353, 371, 730, 874
MhlI	GDGCHC	1 cut(s)	882
MluCI	AATT	6 cut(s)	142, 295, 327, 348, 397, 739
MlyI	GAGTC	1 cut(s)	310
MmeI	TCCRAC	1 cut(s)	344
MseI	TTAA	2 cut(s)	435, 729
MspI	CCGG	6 cut(s)	206, 224, 456, 515, 576, 635
MspR9I	CCNGG	4 cut(s)	515, 516, 635, 636
MwoI	GCNNNNNNNGC	9 cut(s)	11, 267, 456, 495, 504, 576, 615, 624, 804
NciI	CCSGG	4 cut(s)	515, 516, 635, 636
NcoI	CCATGG	2 cut(s)	256, 837
NdeII	GATC	2 cut(s)	343, 382
NlaIII	CATG	4 cut(s)	80, 260, 713, 841
NlaIV	GGNNCC	2 cut(s)	204, 228
NmuCI	GTSAC	2 cut(s)	106, 812
PagI	TCATGA	1 cut(s)	709
PciSI	GCTCTTC	1 cut(s)	61
PfeI	GAWTC	1 cut(s)	758
PkrI	GCNGC	1 cut(s)	263
PleI	GAGTC	1 cut(s)	310
PpsI	GAGTC	1 cut(s)	310
PshBI	ATTAAT	1 cut(s)	435
PspEI	GGTNACC	1 cut(s)	106
PspN4I	GGNNCC	2 cut(s)	204, 228
RsaI	GTAC	3 cut(s)	216, 419, 857
RsaNI	GTAC	3 cut(s)	215, 418, 856
SapI	GCTCTTC	1 cut(s)	61
SaqAI	TTAA	2 cut(s)	435, 729
SatI	GCNGC	1 cut(s)	262
Sau3AI	GATC	2 cut(s)	343, 382
SchI	GAGTC	1 cut(s)	310
ScrFI	CCNGG	4 cut(s)	515, 516, 635, 636
SduI	GDGCHC	1 cut(s)	882
SetI	ASST	6 cut(s)	108, 397, 467, 594, 686, 821
SmaI	CCCGGG	2 cut(s)	516, 636
SpeI	ACTAGT	1 cut(s)	211
Sse9I	AATT	6 cut(s)	142, 295, 327, 348, 397, 739
SsiI	CCGC	4 cut(s)	158, 369, 505, 625
SspMI	CTAG	3 cut(s)	47, 81, 212
StyD4I	CCNGG	4 cut(s)	513, 514, 633, 634
StyI	CCWWGG	3 cut(s)	256, 837, 868
TaaI	ACNGT	2 cut(s)	584, 812
TaiI	ACGT	1 cut(s)	594
TaqI	TCGA	1 cut(s)	290
TasI	AATT	6 cut(s)	142, 295, 327, 348, 397, 739
TatI	WGTACW	1 cut(s)	417
TfiI	GAWTC	1 cut(s)	758
Tru1I	TTAA	2 cut(s)	435, 729
Tru9I	TTAA	2 cut(s)	435, 729
TscAI	CASTG	1 cut(s)	451
TseFI	GTSAC	2 cut(s)	106, 812
TseI	GCWGC	1 cut(s)	261
Tsp45I	GTSAC	2 cut(s)	106, 812
TspDTI	ATGAA	1 cut(s)	65
TspMI	CCCGGG	2 cut(s)	514, 634
TspRI	CASTG	1 cut(s)	451
VspI	ATTAAT	1 cut(s)	435
XapI	RAATTY	1 cut(s)	348
XmaI	CCCGGG	2 cut(s)	514, 634
XspI	CTAG	3 cut(s)	47, 81, 212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.