Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0005927

Physical Location & Seq

Genomic Coordinates Forward (+)

19360836 .. 19361384

Gene Structure 549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g18560.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGAGACAAATGGCAAAACACGAAGAACTCCCAATCCCAATTCACAACACCCTCGACGCCGTCTACGGCGACTCCTCCCAACTCGACGAGGCCCAGCTCCGATTCCACCGGCTGAAGTCCAAGTTCCAGCAGGTCGGTCACCCTCCCCAACTCTTCTCTCGCTCTTCAGGGAGAGTAAACTTGATCGGAGAGCACATAGACTACGAGGGCTATTCAGTGCTGCCGATGGCCATACGACAGGACCCCATTGTCGCAATCCGGAAGCACGACGACGGAGATGCCGAGAAAGTTCTCAGAATCGCCAACGTCAACGACAAGTACCAAATTTGTACTTATGCCGCCGACCCGACCCAGGAAATTGACTTGAAGAATCACAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004335 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006012 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0019318 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N GalKase_gal_bdg

Protein Analysis

127

Amino Acids

14.43

Weight (kDa)

6.36

Isoelectric Point (pI)

44.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005927)

Species	Orthologous Gene IDs
malus_domestica	MD09G1275000.v1.1
pyrus_communis	pycom09g18560
rosa_chinensis	RchiOBHm_Chr2g0091411 RchiOBHm_Chr4g0385481
rosa_laevigata	RLG00000015648 RLG00000022082
rosa_multiflora	Rmu_ssc0000272.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022250
rosa_rugosa	Rorug02G0229700 Rorug02G0546400 Rorug02G0546500 Rorug02G0546600
rosa_samantha	Rh1AG195500 Rh1CG179900 Rh2AG485800 Rh2AG667300 Rh2BG482500 Rh2BG678800 Rh2CG275400 Rh2CG471600 Rh2CG508300 Rh2DG491300 Rh4CG006700 Rh4CG006800 Rh5CG262600 Rh7DG361300
rosa_wichuraiana	Rw2G040510 Rw4G000400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	248
Acc36I	ACCTGC	1 cut(s)	121
AccI	GTMKAC	1 cut(s)	63
AccIII	TCCGGA	1 cut(s)	258
AciI	CCGC	1 cut(s)	339
AcoI	YGGCCR	1 cut(s)	228
AcsI	RAATTY	1 cut(s)	324
AcuI	CTGAAG	2 cut(s)	134, 150
AcyI	GRCGYC	1 cut(s)	57
AfaI	GTAC	2 cut(s)	320, 331
AfiI	CCNNNNNNNGG	1 cut(s)	352
AgsI	TTSAA	1 cut(s)	367
AjnI	CCWGG	1 cut(s)	351
AloI	GAACNNNNNNTCC	2 cut(s)	18, 50
AluBI	AGCT	1 cut(s)	97
AluI	AGCT	1 cut(s)	97
Alw21I	GWGCWC	1 cut(s)	195
Aor13HI	TCCGGA	1 cut(s)	258
AoxI	GGCC	2 cut(s)	90, 228
ApeKI	GCWGC	1 cut(s)	220
ApoI	RAATTY	1 cut(s)	324
AspS9I	GGNCC	2 cut(s)	91, 241
AsuHPI	GGTGA	1 cut(s)	131
AvaII	GGWCC	1 cut(s)	241
BalI	TGGCCA	1 cut(s)	230
Bbv12I	GWGCWC	1 cut(s)	195
BbvI	GCAGC	1 cut(s)	207
BccI	CCATC	1 cut(s)	220
BceAI	ACGGC	2 cut(s)	44, 82
BcgI	CGANNNNNNTGC	2 cut(s)	260, 294
BciT130I	CCWGG	1 cut(s)	353
BfuAI	ACCTGC	1 cut(s)	121
BisI	GCNGC	2 cut(s)	221, 339
BlsI	GCNGC	2 cut(s)	222, 340
Bme1390I	CCNGG	1 cut(s)	353
Bme18I	GGWCC	1 cut(s)	241
BmgT120I	GGNCC	2 cut(s)	91, 241
BmiI	GGNNCC	1 cut(s)	243
BmrFI	CCNGG	1 cut(s)	353
BmsI	GCATC	1 cut(s)	268
BsaHI	GRCGYC	1 cut(s)	57
BsaJI	CCNNGG	1 cut(s)	351
BsaWI	WCCGGW	1 cut(s)	258
BsaXI	ACNNNNNCTCC	2 cut(s)	56, 86
Bsc4I	CCNNNNNNNGG	1 cut(s)	352
Bse118I	RCCGGY	1 cut(s)	108
BseAI	TCCGGA	1 cut(s)	258
BseBI	CCWGG	1 cut(s)	353
BseDI	CCNNGG	1 cut(s)	351
BseLI	CCNNNNNNNGG	1 cut(s)	352
BseMII	CTCAG	1 cut(s)	307
BseRI	GAGGAG	1 cut(s)	64
BseXI	GCAGC	1 cut(s)	207
BseYI	CCCAGC	1 cut(s)	93
BshFI	GGCC	2 cut(s)	92, 230
BsiHKAI	GWGCWC	1 cut(s)	195
BsiSI	CCGG	2 cut(s)	109, 259
BslI	CCNNNNNNNGG	1 cut(s)	352
BsnI	GGCC	2 cut(s)	92, 230
Bsp1286I	GDGCHC	1 cut(s)	195
Bsp13I	TCCGGA	1 cut(s)	258
Bsp143I	GATC	1 cut(s)	183
BspACI	CCGC	1 cut(s)	339
BspANI	GGCC	2 cut(s)	92, 230
BspCNI	CTCAG	1 cut(s)	306
BspEI	TCCGGA	1 cut(s)	258
BspLI	GGNNCC	1 cut(s)	243
BspMI	ACCTGC	1 cut(s)	121
BspQI	GCTCTTC	1 cut(s)	169
BsrFI	RCCGGY	1 cut(s)	108
BssAI	RCCGGY	1 cut(s)	108
BssECI	CCNNGG	1 cut(s)	351
BssMI	GATC	1 cut(s)	183
BssNI	GRCGYC	1 cut(s)	57
Bst2UI	CCWGG	1 cut(s)	353
Bst6I	CTCTTC	2 cut(s)	158, 169
BstACI	GRCGYC	1 cut(s)	57
BstDEI	CTNAG	1 cut(s)	293
BstEII	GGTNACC	1 cut(s)	137
BstKTI	GATC	1 cut(s)	186
BstMBI	GATC	1 cut(s)	183
BstNI	CCWGG	1 cut(s)	353
BstPI	GGTNACC	1 cut(s)	137
BstSCI	CCNGG	1 cut(s)	351
BstV1I	GCAGC	1 cut(s)	207
BsuRI	GGCC	2 cut(s)	92, 230
BtsIMutI	CAGTG	1 cut(s)	222
BveI	ACCTGC	1 cut(s)	121
Cfr10I	RCCGGY	1 cut(s)	108
Cfr13I	GGNCC	2 cut(s)	91, 241
CseI	GACGC	1 cut(s)	65
Csp6I	GTAC	2 cut(s)	319, 330
CviJI	RGCY	5 cut(s)	92, 97, 112, 210, 230
CviKI_1	RGCY	5 cut(s)	92, 97, 112, 210, 230
CviQI	GTAC	2 cut(s)	319, 330
DdeI	CTNAG	1 cut(s)	293
DpnI	GATC	1 cut(s)	185
DpnII	GATC	1 cut(s)	183
DrdI	GACNNNNNNGTC	1 cut(s)	248
DseDI	GACNNNNNNGTC	1 cut(s)	248
EaeI	YGGCCR	1 cut(s)	228
Eam1104I	CTCTTC	2 cut(s)	158, 169
EarI	CTCTTC	2 cut(s)	158, 169
Eco47I	GGWCC	1 cut(s)	241
Eco57I	CTGAAG	2 cut(s)	134, 150
Eco91I	GGTNACC	1 cut(s)	137
EcoO109I	RGGNCCY	1 cut(s)	241
EcoO65I	GGTNACC	1 cut(s)	137
EcoRII	CCWGG	1 cut(s)	351
FaiI	YATR	3 cut(s)	197, 233, 336
FblI	GTMKAC	1 cut(s)	63
Fnu4HI	GCNGC	2 cut(s)	221, 339
Fsp4HI	GCNGC	2 cut(s)	221, 339
GluI	GCNGC	2 cut(s)	221, 339
GsaI	CCCAGC	1 cut(s)	97
HaeIII	GGCC	2 cut(s)	92, 230
HapII	CCGG	2 cut(s)	109, 259
HgaI	GACGC	1 cut(s)	65
Hin1I	GRCGYC	1 cut(s)	57
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HinfI	GANTC	4 cut(s)	71, 102, 297, 370
HpaII	CCGG	2 cut(s)	109, 259
HphI	GGTGA	1 cut(s)	131
Hpy166II	GTNNAC	3 cut(s)	64, 178, 310
Hpy188I	TCNGA	3 cut(s)	101, 188, 296
Hpy188III	TCNNGA	1 cut(s)	259
Hpy8I	GTNNAC	3 cut(s)	64, 178, 310
Hpy99I	CGWCG	4 cut(s)	59, 89, 272, 275
HpyCH4IV	ACGT	1 cut(s)	306
HpyF3I	CTNAG	1 cut(s)	293
HpySE526I	ACGT	1 cut(s)	306
Hsp92I	GRCGYC	1 cut(s)	57
Kpn2I	TCCGGA	1 cut(s)	258
Kzo9I	GATC	1 cut(s)	183
LguI	GCTCTTC	1 cut(s)	169
LmnI	GCTCC	1 cut(s)	102
LpnPI	CCDG	9 cut(s)	107, 116, 122, 140, 153, 224, 272, 338, 365
Lsp1109I	GCAGC	1 cut(s)	207
LweI	GCATC	1 cut(s)	268
MaeII	ACGT	1 cut(s)	306
MaeIII	GTNAC	1 cut(s)	137
MalI	GATC	1 cut(s)	185
MboI	GATC	1 cut(s)	183
MboII	GAAGA	4 cut(s)	35, 145, 156, 379
MhlI	GDGCHC	1 cut(s)	195
MlsI	TGGCCA	1 cut(s)	230
MluCI	AATT	3 cut(s)	39, 324, 357
MluNI	TGGCCA	1 cut(s)	230
MlyI	GAGTC	1 cut(s)	65
MnlI	CCTC	5 cut(s)	62, 82, 85, 153, 199
Mox20I	TGGCCA	1 cut(s)	230
MroI	TCCGGA	1 cut(s)	258
MscI	TGGCCA	1 cut(s)	230
Msp20I	TGGCCA	1 cut(s)	230
MspI	CCGG	2 cut(s)	109, 259
MspR9I	CCNGG	1 cut(s)	353
MvaI	CCWGG	1 cut(s)	353
NdeII	GATC	1 cut(s)	183
NlaIV	GGNNCC	1 cut(s)	243
NmeAIII	GCCGAG	1 cut(s)	307
NmuCI	GTSAC	1 cut(s)	137
PciSI	GCTCTTC	1 cut(s)	169
PcsI	WCGNNNNNNNCGW	1 cut(s)	279
PfeI	GAWTC	3 cut(s)	102, 297, 370
PflFI	GACNNNGTC	1 cut(s)	59
PkrI	GCNGC	2 cut(s)	222, 340
PleI	GAGTC	1 cut(s)	65
PpsI	GAGTC	1 cut(s)	65
PpuMI	RGGWCCY	1 cut(s)	241
Psp5II	RGGWCCY	1 cut(s)	241
Psp6I	CCWGG	1 cut(s)	351
PspEI	GGTNACC	1 cut(s)	137
PspFI	CCCAGC	1 cut(s)	93
PspGI	CCWGG	1 cut(s)	351
PspN4I	GGNNCC	1 cut(s)	243
PspPI	GGNCC	2 cut(s)	91, 241
PspPPI	RGGWCCY	1 cut(s)	241
PsyI	GACNNNGTC	1 cut(s)	59
RsaI	GTAC	2 cut(s)	320, 331
RsaNI	GTAC	2 cut(s)	319, 330
SapI	GCTCTTC	1 cut(s)	169
SatI	GCNGC	2 cut(s)	221, 339
Sau3AI	GATC	1 cut(s)	183
Sau96I	GGNCC	2 cut(s)	91, 241
SchI	GAGTC	1 cut(s)	65
ScrFI	CCNGG	1 cut(s)	353
SduI	GDGCHC	1 cut(s)	195
SetI	ASST	3 cut(s)	99, 135, 309
SfaNI	GCATC	1 cut(s)	268
SinI	GGWCC	1 cut(s)	241
Sse9I	AATT	3 cut(s)	39, 324, 357
SsiI	CCGC	1 cut(s)	339
StyD4I	CCNGG	1 cut(s)	351
TaiI	ACGT	1 cut(s)	309
TaqI	TCGA	2 cut(s)	54, 84
TaqII	GACCGA	1 cut(s)	125
TasI	AATT	3 cut(s)	39, 324, 357
TatI	WGTACW	1 cut(s)	329
TauI	GCSGC	1 cut(s)	341
TfiI	GAWTC	3 cut(s)	102, 297, 370
TscAI	CASTG	1 cut(s)	222
TseFI	GTSAC	1 cut(s)	137
TseI	GCWGC	1 cut(s)	220
Tsp45I	GTSAC	1 cut(s)	137
TspGWI	ACGGA	1 cut(s)	288
TspRI	CASTG	1 cut(s)	222
Tth111I	GACNNNGTC	1 cut(s)	59
VpaK11BI	GGWCC	1 cut(s)	241
XapI	RAATTY	1 cut(s)	324
XmiI	GTMKAC	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.