Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0005927

Physical Location & Seq

Genomic Coordinates Reverse (-)

928716 .. 933509

Gene Structure 4794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G000400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGCTCAAATGATGAGCCACGAAGAACTCCCGATGGGGAAGGGTATCTTCTTCTACGACGATCCCTCGCAACTCGAGGAGGCCCAGCTACACTTACACCGCCTCAAGACCAAGTTTCACAAGGTCTTCGGGCACCTTCCTCAAGTCTACGCTCGCTCTCCAGGTCTTTGTAAAGATATAAGATGGCTGTCATTTGGATGGTCTCTGAACCGGGTCAGTGAAGAAGGAAAACAGAGACACAGGATCAAGGAGCTCCACCATGAAGCAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004335 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006012 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0019318 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N GalKase_gal_bdg

Protein Analysis

90

Amino Acids

10.71

Weight (kDa)

9.25

Isoelectric Point (pI)

65.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005927)

Species	Orthologous Gene IDs
malus_domestica	MD09G1275000.v1.1
pyrus_communis	pycom09g18560
rosa_chinensis	RchiOBHm_Chr2g0091411 RchiOBHm_Chr4g0385481
rosa_laevigata	RLG00000015648 RLG00000022082
rosa_multiflora	Rmu_ssc0000272.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022250
rosa_rugosa	Rorug02G0229700 Rorug02G0546400 Rorug02G0546500 Rorug02G0546600
rosa_samantha	Rh1AG195500 Rh1CG179900 Rh2AG485800 Rh2AG667300 Rh2BG482500 Rh2BG678800 Rh2CG275400 Rh2CG471600 Rh2CG508300 Rh2DG491300 Rh4CG006700 Rh4CG006800 Rh5CG262600 Rh7DG361300
rosa_wichuraiana	Rw2G040510 Rw4G000400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	132
AccI	GTMKAC	1 cut(s)	147
AciI	CCGC	1 cut(s)	100
AclWI	GGATC	2 cut(s)	56, 251
AjnI	CCWGG	1 cut(s)	160
AluBI	AGCT	2 cut(s)	88, 253
AluI	AGCT	2 cut(s)	88, 253
Alw21I	GWGCWC	1 cut(s)	255
Alw26I	GTCTC	2 cut(s)	207, 229
AlwI	GGATC	2 cut(s)	56, 251
Ama87I	CYCGRG	1 cut(s)	74
AoxI	GGCC	1 cut(s)	81
AspS9I	GGNCC	1 cut(s)	82
AsuC2I	CCSGG	1 cut(s)	212
AvaI	CYCGRG	1 cut(s)	74
BaeGI	GKGCMC	1 cut(s)	135
BanI	GGYRCC	1 cut(s)	132
BanII	GRGCYC	1 cut(s)	255
BbsI	GAAGAC	1 cut(s)	118
Bbv12I	GWGCWC	1 cut(s)	255
BccI	CCATC	3 cut(s)	28, 177, 192
BciT130I	CCWGG	1 cut(s)	162
BcnI	CCSGG	1 cut(s)	212
BcoDI	GTCTC	2 cut(s)	207, 229
Bme1390I	CCNGG	2 cut(s)	162, 212
BmeT110I	CYCGRG	1 cut(s)	74
BmgT120I	GGNCC	1 cut(s)	82
BmiI	GGNNCC	1 cut(s)	134
BmrFI	CCNGG	2 cut(s)	162, 212
BpiI	GAAGAC	1 cut(s)	118
BpmI	CTGGAG	1 cut(s)	144
BpuEI	CTTGAG	2 cut(s)	89, 126
BpuMI	CCSGG	1 cut(s)	212
BsaI	GGTCTC	1 cut(s)	207
BseBI	CCWGG	1 cut(s)	162
BseGI	GGATG	1 cut(s)	203
BseRI	GAGGAG	1 cut(s)	92
BseSI	GKGCMC	1 cut(s)	135
BseYI	CCCAGC	1 cut(s)	84
BshFI	GGCC	1 cut(s)	83
BshNI	GGYRCC	1 cut(s)	132
BsiHKAI	GWGCWC	1 cut(s)	255
BsiHKCI	CYCGRG	1 cut(s)	74
BsiSI	CCGG	1 cut(s)	211
BsmAI	GTCTC	2 cut(s)	207, 229
BsnI	GGCC	1 cut(s)	83
Bso31I	GGTCTC	1 cut(s)	207
BsoBI	CYCGRG	1 cut(s)	74
Bsp1286I	GDGCHC	2 cut(s)	135, 255
Bsp143I	GATC	2 cut(s)	61, 243
BspACI	CCGC	1 cut(s)	100
BspANI	GGCC	1 cut(s)	83
BspLI	GGNNCC	1 cut(s)	134
BspPI	GGATC	2 cut(s)	56, 251
BspT107I	GGYRCC	1 cut(s)	132
BspTNI	GGTCTC	1 cut(s)	207
BssMI	GATC	2 cut(s)	61, 243
Bst2UI	CCWGG	1 cut(s)	162
BstC8I	GCNNGC	1 cut(s)	154
BstF5I	GGATG	1 cut(s)	203
BstKTI	GATC	2 cut(s)	64, 246
BstMAI	GTCTC	2 cut(s)	207, 229
BstMBI	GATC	2 cut(s)	61, 243
BstNI	CCWGG	1 cut(s)	162
BstSCI	CCNGG	2 cut(s)	160, 210
BstSLI	GKGCMC	1 cut(s)	135
BstV2I	GAAGAC	1 cut(s)	118
BsuRI	GGCC	1 cut(s)	83
BtsCI	GGATG	1 cut(s)	203
BtsIMutI	CAGTG	1 cut(s)	223
Cac8I	GCNNGC	1 cut(s)	154
Cfr13I	GGNCC	1 cut(s)	82
CviAII	CATG	1 cut(s)	260
CviJI	RGCY	6 cut(s)	5, 18, 83, 88, 187, 253
CviKI_1	RGCY	6 cut(s)	5, 18, 83, 88, 187, 253
DpnI	GATC	2 cut(s)	63, 245
DpnII	GATC	2 cut(s)	61, 243
Ecl136II	GAGCTC	1 cut(s)	253
Eco24I	GRGCYC	1 cut(s)	255
Eco31I	GGTCTC	1 cut(s)	207
Eco53kI	GAGCTC	1 cut(s)	253
Eco88I	CYCGRG	1 cut(s)	74
EcoICRI	GAGCTC	1 cut(s)	253
EcoRII	CCWGG	1 cut(s)	160
EcoT38I	GRGCYC	1 cut(s)	255
FaeI	CATG	1 cut(s)	263
FaiI	YATR	2 cut(s)	179, 261
FalI	AAGNNNNNCTT	2 cut(s)	32, 64
FatI	CATG	1 cut(s)	259
FblI	GTMKAC	1 cut(s)	147
FokI	GGATG	1 cut(s)	210
FriOI	GRGCYC	1 cut(s)	255
GsaI	CCCAGC	1 cut(s)	88
GsuI	CTGGAG	1 cut(s)	144
HaeIII	GGCC	1 cut(s)	83
HapII	CCGG	1 cut(s)	211
Hin1II	CATG	1 cut(s)	263
HpaII	CCGG	1 cut(s)	211
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188I	TCNGA	1 cut(s)	207
Hpy188III	TCNNGA	2 cut(s)	31, 106
Hpy8I	GTNNAC	1 cut(s)	148
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	3 cut(s)	34, 146, 218
Hsp92II	CATG	1 cut(s)	263
Kzo9I	GATC	2 cut(s)	61, 243
LmnI	GCTCC	2 cut(s)	250, 258
LpnPI	CCDG	5 cut(s)	98, 147, 174, 224, 226
MalI	GATC	2 cut(s)	63, 245
MboI	GATC	2 cut(s)	61, 243
MboII	GAAGA	5 cut(s)	35, 40, 43, 118, 233
MhlI	GDGCHC	2 cut(s)	135, 255
MnlI	CCTC	5 cut(s)	70, 73, 76, 113, 150
MslI	CAYNNNNRTG	1 cut(s)	196
MspI	CCGG	1 cut(s)	211
MspR9I	CCNGG	2 cut(s)	162, 212
MvaI	CCWGG	1 cut(s)	162
NciI	CCSGG	1 cut(s)	212
NdeII	GATC	2 cut(s)	61, 243
NlaIII	CATG	1 cut(s)	263
NlaIV	GGNNCC	1 cut(s)	134
PaeR7I	CTCGAG	1 cut(s)	74
Psp124BI	GAGCTC	1 cut(s)	255
Psp6I	CCWGG	1 cut(s)	160
PspFI	CCCAGC	1 cut(s)	84
PspGI	CCWGG	1 cut(s)	160
PspN4I	GGNNCC	1 cut(s)	134
PspPI	GGNCC	1 cut(s)	82
PspXI	VCTCGAGB	1 cut(s)	74
RseI	CAYNNNNRTG	1 cut(s)	196
SacI	GAGCTC	1 cut(s)	255
Sau3AI	GATC	2 cut(s)	61, 243
Sau96I	GGNCC	1 cut(s)	82
ScrFI	CCNGG	2 cut(s)	162, 212
SduI	GDGCHC	2 cut(s)	135, 255
SetI	ASST	5 cut(s)	90, 126, 138, 166, 255
Sfr274I	CTCGAG	1 cut(s)	74
SlaI	CTCGAG	1 cut(s)	74
SmiMI	CAYNNNNRTG	1 cut(s)	196
SmlI	CTYRAG	3 cut(s)	74, 104, 141
SmoI	CTYRAG	3 cut(s)	74, 104, 141
SsiI	CCGC	1 cut(s)	100
SstI	GAGCTC	1 cut(s)	255
StyD4I	CCNGG	2 cut(s)	160, 210
TaqI	TCGA	1 cut(s)	75
TscAI	CASTG	1 cut(s)	223
TspRI	CASTG	1 cut(s)	223
XhoI	CTCGAG	1 cut(s)	74
XmiI	GTMKAC	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.