Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0005927

Physical Location & Seq

Genomic Coordinates Forward (+)

63655929 .. 63658006

Gene Structure 2078 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG471600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGCTCAAATGATGAGCCACGAAGAACTCCCGATCCGAATCCACTTCGCTGTCGACGAAGTTTACGACGATCCCTCGCAACTCGAGGAGGCCCAGCTCCGCTTACACCGCCTCAAGACCAAGTTTCACAAGATCTTCGGGCACCTTCCTCAAGTCTGCGCTCGCTCGCCAGTTTCTTTTCTATGGTATTTCCTGTATAACAAATCGGAGAACTGGGGAAGAAAGAAGTATAAAGCTGATTACGAGGGAATAGGATGGAACAGAGTGGAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004335 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006012 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0019318 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N GalKase_gal_bdg

Protein Analysis

91

Amino Acids

10.97

Weight (kDa)

6.97

Isoelectric Point (pI)

54.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005927)

Species	Orthologous Gene IDs
malus_domestica	MD09G1275000.v1.1
pyrus_communis	pycom09g18560
rosa_chinensis	RchiOBHm_Chr2g0091411 RchiOBHm_Chr4g0385481
rosa_laevigata	RLG00000015648 RLG00000022082
rosa_multiflora	Rmu_ssc0000272.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022250
rosa_rugosa	Rorug02G0229700 Rorug02G0546400 Rorug02G0546500 Rorug02G0546600
rosa_samantha	Rh1AG195500 Rh1CG179900 Rh2AG485800 Rh2AG667300 Rh2BG482500 Rh2BG678800 Rh2CG275400 Rh2CG471600 Rh2CG508300 Rh2DG491300 Rh4CG006700 Rh4CG006800 Rh5CG262600 Rh7DG361300
rosa_wichuraiana	Rw2G040510 Rw4G000400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	141
AccI	GTMKAC	1 cut(s)	54
AciI	CCGC	2 cut(s)	100, 109
AclWI	GGATC	2 cut(s)	28, 65
AloI	GAACNNNNNNTCC	2 cut(s)	18, 50
AluBI	AGCT	2 cut(s)	97, 236
AluI	AGCT	2 cut(s)	97, 236
AlwI	GGATC	2 cut(s)	28, 65
Ama87I	CYCGRG	1 cut(s)	83
AoxI	GGCC	1 cut(s)	90
AspLEI	GCGC	1 cut(s)	161
AspS9I	GGNCC	1 cut(s)	91
AvaI	CYCGRG	1 cut(s)	83
BaeGI	GKGCMC	1 cut(s)	144
BanI	GGYRCC	1 cut(s)	141
BccI	CCATC	1 cut(s)	249
BglII	AGATCT	1 cut(s)	132
BmeT110I	CYCGRG	1 cut(s)	83
BmgT120I	GGNCC	1 cut(s)	91
BmiI	GGNNCC	1 cut(s)	143
BmrI	ACTGGG	1 cut(s)	223
BmuI	ACTGGG	1 cut(s)	223
BpuEI	CTTGAG	2 cut(s)	98, 135
BsaBI	GATNNNNATC	1 cut(s)	38
Bse1I	ACTGG	2 cut(s)	170, 218
Bse8I	GATNNNNATC	1 cut(s)	38
BseGI	GGATG	1 cut(s)	260
BseJI	GATNNNNATC	1 cut(s)	38
BseNI	ACTGG	2 cut(s)	170, 218
BseRI	GAGGAG	1 cut(s)	101
BseSI	GKGCMC	1 cut(s)	144
BseYI	CCCAGC	1 cut(s)	93
BshFI	GGCC	1 cut(s)	92
BshNI	GGYRCC	1 cut(s)	141
BsiHKCI	CYCGRG	1 cut(s)	83
BsnI	GGCC	1 cut(s)	92
BsoBI	CYCGRG	1 cut(s)	83
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp143I	GATC	3 cut(s)	33, 70, 132
BspACI	CCGC	2 cut(s)	100, 109
BspANI	GGCC	1 cut(s)	92
BspLI	GGNNCC	1 cut(s)	143
BspPI	GGATC	2 cut(s)	28, 65
BspT107I	GGYRCC	1 cut(s)	141
BsrI	ACTGG	2 cut(s)	170, 218
BssMI	GATC	3 cut(s)	33, 70, 132
BstC8I	GCNNGC	2 cut(s)	163, 167
BstF5I	GGATG	1 cut(s)	260
BstHHI	GCGC	1 cut(s)	161
BstKTI	GATC	3 cut(s)	36, 73, 135
BstMBI	GATC	3 cut(s)	33, 70, 132
BstMWI	GCNNNNNNNGC	1 cut(s)	108
BstSLI	GKGCMC	1 cut(s)	144
BstX2I	RGATCY	1 cut(s)	132
BstYI	RGATCY	1 cut(s)	132
BsuRI	GGCC	1 cut(s)	92
BtsCI	GGATG	1 cut(s)	260
Cac8I	GCNNGC	2 cut(s)	163, 167
CfoI	GCGC	1 cut(s)	161
Cfr13I	GGNCC	1 cut(s)	91
CviJI	RGCY	5 cut(s)	5, 18, 92, 97, 236
CviKI_1	RGCY	5 cut(s)	5, 18, 92, 97, 236
DpnI	GATC	3 cut(s)	35, 72, 134
DpnII	GATC	3 cut(s)	33, 70, 132
Eco88I	CYCGRG	1 cut(s)	83
FaiI	YATR	3 cut(s)	184, 198, 231
FblI	GTMKAC	1 cut(s)	54
FokI	GGATG	1 cut(s)	267
GlaI	GCGC	1 cut(s)	160
GsaI	CCCAGC	1 cut(s)	97
HaeIII	GGCC	1 cut(s)	92
HhaI	GCGC	1 cut(s)	161
Hin6I	GCGC	1 cut(s)	159
HinP1I	GCGC	1 cut(s)	159
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HinfI	GANTC	1 cut(s)	39
Hpy166II	GTNNAC	2 cut(s)	55, 64
Hpy188I	TCNGA	2 cut(s)	38, 208
Hpy188III	TCNNGA	2 cut(s)	31, 115
Hpy8I	GTNNAC	2 cut(s)	55, 64
Hpy99I	CGWCG	2 cut(s)	59, 71
HpyAV	CCTTC	1 cut(s)	155
HpyF10VI	GCNNNNNNNGC	1 cut(s)	108
HspAI	GCGC	1 cut(s)	159
Kzo9I	GATC	3 cut(s)	33, 70, 132
LmnI	GCTCC	1 cut(s)	102
LpnPI	CCDG	4 cut(s)	107, 183, 199, 206
MalI	GATC	3 cut(s)	35, 72, 134
MboI	GATC	3 cut(s)	33, 70, 132
MboII	GAAGA	3 cut(s)	35, 127, 231
MflI	RGATCY	1 cut(s)	132
MhlI	GDGCHC	1 cut(s)	144
MnlI	CCTC	6 cut(s)	79, 82, 85, 122, 159, 238
MwoI	GCNNNNNNNGC	1 cut(s)	108
NdeII	GATC	3 cut(s)	33, 70, 132
NlaIV	GGNNCC	1 cut(s)	143
PaeR7I	CTCGAG	1 cut(s)	83
PcsI	WCGNNNNNNNCGW	2 cut(s)	54, 63
PfeI	GAWTC	1 cut(s)	39
PspFI	CCCAGC	1 cut(s)	93
PspN4I	GGNNCC	1 cut(s)	143
PspPI	GGNCC	1 cut(s)	91
PspXI	VCTCGAGB	1 cut(s)	83
PsuI	RGATCY	1 cut(s)	132
SalI	GTCGAC	1 cut(s)	53
Sau3AI	GATC	3 cut(s)	33, 70, 132
Sau96I	GGNCC	1 cut(s)	91
SduI	GDGCHC	1 cut(s)	144
SetI	ASST	3 cut(s)	99, 147, 238
Sfr274I	CTCGAG	1 cut(s)	83
SlaI	CTCGAG	1 cut(s)	83
SmlI	CTYRAG	3 cut(s)	83, 113, 150
SmoI	CTYRAG	3 cut(s)	83, 113, 150
SsiI	CCGC	2 cut(s)	100, 109
TaqI	TCGA	2 cut(s)	54, 84
TfiI	GAWTC	1 cut(s)	39
XhoI	CTCGAG	1 cut(s)	83
XmiI	GTMKAC	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.