Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0005927

Physical Location & Seq

Genomic Coordinates Forward (+)

68194857 .. 68209575

Gene Structure 14719 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG482500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGCTCAAATGATGAGCCACGAAGAACTCTCGATCCGAATCCACTTCGCTGTCGACGAAGTCTACGACGATCCCTCGCAACTCGAGGAGGCCCAGCTCTGCTTACACGGCCTCAAGACCAAGTTTCACAAGATCTTCGGGCACCTTCCTCAAGTCTGCGCTCGCTCTCCAGGGAGAGTGAATTTGATTGGAGAGCATACAGACTATGACGGATTCTCGGTGTTGCTGATGAACAATGAAGAAGGAAAACAAAGACACAGGTTGCTTCTCAAAATAACACCAATTGGAATGGTTCTGGATGAGAAGCATATTGGTTATGATCTTACAGGGAAGAAGATTAAAAAGAAGGAAAGTGGAGAAATTGCAATTTTTCTTGCTAGCGCTGATGATTCCAAAAATTGGTGGGTTTTACATAGGGCTTATGGTATAGAGGCTGATATCTGGAGCTTTAATTGGAGGACTGATGTTTTAAGAACAGACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004335 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006012 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0019318 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N GalKase_gal_bdg

Protein Analysis

161

Amino Acids

18.57

Weight (kDa)

6.3

Isoelectric Point (pI)

35.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GalKase_gal_bdg	PF10509	41 - 77	1.3e-15	Galactokinase galactose-binding signature
BOP1NT	PF08145	100 - 137	7.6e-06	BOP1NT (NUC169) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005927)

Species	Orthologous Gene IDs
malus_domestica	MD09G1275000.v1.1
pyrus_communis	pycom09g18560
rosa_chinensis	RchiOBHm_Chr2g0091411 RchiOBHm_Chr4g0385481
rosa_laevigata	RLG00000015648 RLG00000022082
rosa_multiflora	Rmu_ssc0000272.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022250
rosa_rugosa	Rorug02G0229700 Rorug02G0546400 Rorug02G0546500 Rorug02G0546600
rosa_samantha	Rh1AG195500 Rh1CG179900 Rh2AG485800 Rh2AG667300 Rh2BG482500 Rh2BG678800 Rh2CG275400 Rh2CG471600 Rh2CG508300 Rh2DG491300 Rh4CG006700 Rh4CG006800 Rh5CG262600 Rh7DG361300
rosa_wichuraiana	Rw2G040510 Rw4G000400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	141
AccB7I	CCANNNNNTGG	1 cut(s)	399
AccI	GTMKAC	2 cut(s)	54, 63
AclWI	GGATC	2 cut(s)	28, 65
AcsI	RAATTY	1 cut(s)	181
AfeI	AGCGCT	1 cut(s)	382
AfiI	CCNNNNNNNGG	1 cut(s)	399
AjnI	CCWGG	1 cut(s)	169
AloI	GAACNNNNNNTCC	2 cut(s)	18, 50
AluBI	AGCT	2 cut(s)	97, 447
AluI	AGCT	2 cut(s)	97, 447
AlwI	GGATC	2 cut(s)	28, 65
Ama87I	CYCGRG	1 cut(s)	83
Aor51HI	AGCGCT	1 cut(s)	382
AoxI	GGCC	2 cut(s)	90, 109
ApoI	RAATTY	1 cut(s)	181
AspLEI	GCGC	2 cut(s)	161, 383
AspS9I	GGNCC	1 cut(s)	91
AsuNHI	GCTAGC	1 cut(s)	377
AvaI	CYCGRG	1 cut(s)	83
BaeGI	GKGCMC	1 cut(s)	144
BanI	GGYRCC	1 cut(s)	141
BceAI	ACGGC	1 cut(s)	124
BciT130I	CCWGG	1 cut(s)	171
BfaI	CTAG	1 cut(s)	378
BfoI	RGCGCY	1 cut(s)	384
BglII	AGATCT	1 cut(s)	132
Bme1390I	CCNGG	1 cut(s)	171
BmeT110I	CYCGRG	1 cut(s)	83
BmgT120I	GGNCC	1 cut(s)	91
BmiI	GGNNCC	1 cut(s)	143
BmrFI	CCNGG	1 cut(s)	171
BmtI	GCTAGC	1 cut(s)	381
BpmI	CTGGAG	2 cut(s)	153, 463
BpuEI	CTTGAG	2 cut(s)	98, 135
BsaBI	GATNNNNATC	1 cut(s)	38
BsaJI	CCNNGG	1 cut(s)	170
Bsc4I	CCNNNNNNNGG	1 cut(s)	399
Bse8I	GATNNNNATC	1 cut(s)	38
BseBI	CCWGG	1 cut(s)	171
BseDI	CCNNGG	1 cut(s)	170
BseGI	GGATG	1 cut(s)	304
BseJI	GATNNNNATC	1 cut(s)	38
BseLI	CCNNNNNNNGG	1 cut(s)	399
BseRI	GAGGAG	1 cut(s)	101
BseSI	GKGCMC	1 cut(s)	144
BseYI	CCCAGC	1 cut(s)	93
BshFI	GGCC	2 cut(s)	92, 111
BshNI	GGYRCC	1 cut(s)	141
BsiHKCI	CYCGRG	1 cut(s)	83
BslI	CCNNNNNNNGG	1 cut(s)	399
BsnI	GGCC	2 cut(s)	92, 111
BsoBI	CYCGRG	1 cut(s)	83
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp143I	GATC	4 cut(s)	33, 70, 132, 319
BspANI	GGCC	2 cut(s)	92, 111
BspLI	GGNNCC	1 cut(s)	143
BspOI	GCTAGC	1 cut(s)	381
BspPI	GGATC	2 cut(s)	28, 65
BspT107I	GGYRCC	1 cut(s)	141
BssECI	CCNNGG	1 cut(s)	170
BssMI	GATC	4 cut(s)	33, 70, 132, 319
Bst2UI	CCWGG	1 cut(s)	171
BstC8I	GCNNGC	2 cut(s)	163, 379
BstF5I	GGATG	1 cut(s)	304
BstH2I	RGCGCY	1 cut(s)	384
BstHHI	GCGC	2 cut(s)	161, 383
BstKTI	GATC	4 cut(s)	36, 73, 135, 322
BstMBI	GATC	4 cut(s)	33, 70, 132, 319
BstMWI	GCNNNNNNNGC	1 cut(s)	108
BstNI	CCWGG	1 cut(s)	171
BstSCI	CCNGG	1 cut(s)	169
BstSLI	GKGCMC	1 cut(s)	144
BstX2I	RGATCY	1 cut(s)	132
BstYI	RGATCY	1 cut(s)	132
BsuRI	GGCC	2 cut(s)	92, 111
BtsCI	GGATG	1 cut(s)	304
Cac8I	GCNNGC	2 cut(s)	163, 379
CfoI	GCGC	2 cut(s)	161, 383
Cfr13I	GGNCC	1 cut(s)	91
CviJI	RGCY	8 cut(s)	5, 18, 92, 97, 111, 419, 434, 447
CviKI_1	RGCY	8 cut(s)	5, 18, 92, 97, 111, 419, 434, 447
DpnI	GATC	4 cut(s)	35, 72, 134, 321
DpnII	GATC	4 cut(s)	33, 70, 132, 319
Eco32I	GATATC	1 cut(s)	439
Eco47III	AGCGCT	1 cut(s)	382
Eco88I	CYCGRG	1 cut(s)	83
EcoRII	CCWGG	1 cut(s)	169
EcoRV	GATATC	1 cut(s)	439
FaiI	YATR	7 cut(s)	198, 207, 309, 318, 414, 423, 428
FblI	GTMKAC	2 cut(s)	54, 63
FokI	GGATG	1 cut(s)	311
FspBI	CTAG	1 cut(s)	378
GlaI	GCGC	2 cut(s)	160, 382
GsaI	CCCAGC	1 cut(s)	97
GsuI	CTGGAG	2 cut(s)	153, 463
HaeII	RGCGCY	1 cut(s)	384
HaeIII	GGCC	2 cut(s)	92, 111
HhaI	GCGC	2 cut(s)	161, 383
Hin6I	GCGC	2 cut(s)	159, 381
HinP1I	GCGC	2 cut(s)	159, 381
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HinfI	GANTC	3 cut(s)	39, 213, 389
Hpy166II	GTNNAC	2 cut(s)	55, 64
Hpy188I	TCNGA	1 cut(s)	38
Hpy188III	TCNNGA	4 cut(s)	31, 115, 296, 442
Hpy8I	GTNNAC	2 cut(s)	55, 64
Hpy99I	CGWCG	2 cut(s)	59, 71
HpyAV	CCTTC	3 cut(s)	155, 236, 340
HpyCH4V	TGCA	1 cut(s)	365
HpyF10VI	GCNNNNNNNGC	1 cut(s)	108
HspAI	GCGC	2 cut(s)	159, 381
Kzo9I	GATC	4 cut(s)	33, 70, 132, 319
LmnI	GCTCC	1 cut(s)	444
LpnPI	CCDG	7 cut(s)	107, 156, 183, 244, 281, 312, 427
MaeI	CTAG	1 cut(s)	378
MalI	GATC	4 cut(s)	35, 72, 134, 321
MboI	GATC	4 cut(s)	33, 70, 132, 319
MboII	GAAGA	5 cut(s)	35, 127, 251, 343, 346
MfeI	CAATTG	1 cut(s)	282
MflI	RGATCY	1 cut(s)	132
MhlI	GDGCHC	1 cut(s)	144
MluCI	AATT	6 cut(s)	181, 282, 360, 366, 397, 451
MnlI	CCTC	7 cut(s)	79, 82, 85, 122, 159, 424, 450
MseI	TTAA	3 cut(s)	339, 450, 470
MspR9I	CCNGG	1 cut(s)	171
MunI	CAATTG	1 cut(s)	282
MvaI	CCWGG	1 cut(s)	171
MwoI	GCNNNNNNNGC	1 cut(s)	108
NdeII	GATC	4 cut(s)	33, 70, 132, 319
NheI	GCTAGC	1 cut(s)	377
NlaIV	GGNNCC	1 cut(s)	143
PaeR7I	CTCGAG	1 cut(s)	83
PcsI	WCGNNNNNNNCGW	2 cut(s)	54, 63
PfeI	GAWTC	3 cut(s)	39, 213, 389
PflFI	GACNNNGTC	1 cut(s)	59
PflMI	CCANNNNNTGG	1 cut(s)	399
Psp6I	CCWGG	1 cut(s)	169
PspFI	CCCAGC	1 cut(s)	93
PspGI	CCWGG	1 cut(s)	169
PspN4I	GGNNCC	1 cut(s)	143
PspPI	GGNCC	1 cut(s)	91
PspXI	VCTCGAGB	1 cut(s)	83
PsuI	RGATCY	1 cut(s)	132
PsyI	GACNNNGTC	1 cut(s)	59
SalI	GTCGAC	1 cut(s)	53
SaqAI	TTAA	3 cut(s)	339, 450, 470
Sau3AI	GATC	4 cut(s)	33, 70, 132, 319
Sau96I	GGNCC	1 cut(s)	91
ScrFI	CCNGG	1 cut(s)	171
SduI	GDGCHC	1 cut(s)	144
SetI	ASST	4 cut(s)	99, 147, 263, 449
Sfr274I	CTCGAG	1 cut(s)	83
SlaI	CTCGAG	1 cut(s)	83
SmlI	CTYRAG	3 cut(s)	83, 113, 150
SmoI	CTYRAG	3 cut(s)	83, 113, 150
Sse9I	AATT	6 cut(s)	181, 282, 360, 366, 397, 451
SspMI	CTAG	1 cut(s)	378
StyD4I	CCNGG	1 cut(s)	169
TaqI	TCGA	3 cut(s)	32, 54, 84
TasI	AATT	6 cut(s)	181, 282, 360, 366, 397, 451
TfiI	GAWTC	3 cut(s)	39, 213, 389
Tru1I	TTAA	3 cut(s)	339, 450, 470
Tru9I	TTAA	3 cut(s)	339, 450, 470
TspDTI	ATGAA	2 cut(s)	245, 252
TspGWI	ACGGA	1 cut(s)	225
Tth111I	GACNNNGTC	1 cut(s)	59
Van91I	CCANNNNNTGG	1 cut(s)	399
XapI	RAATTY	1 cut(s)	181
XhoI	CTCGAG	1 cut(s)	83
XmiI	GTMKAC	2 cut(s)	54, 63
XspI	CTAG	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.