Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000272.1

Orthogroup ID

OG0005927

Physical Location & Seq

Genomic Coordinates Forward (+)

288 .. 613

Gene Structure 326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000272.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

atggctcaaatgatgagccacgaagaactcccgatggggaagggtatcttcttctacgacgatccctcgcaactcgaggaggcccagctacgcttacaccgcctcaagaccaagtttcataaggtcttcgggcaccttcctcaagtctacgctcgctctccagggagagtgaatttgattggagagcatacagactatgacggattctcggtgttgccgatggcgatatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004335 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006012 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0019318 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N GalKase_gal_bdg

Protein Analysis

76

Amino Acids

8.76

Weight (kDa)

6.49

Isoelectric Point (pI)

60.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005927)

Species	Orthologous Gene IDs
malus_domestica	MD09G1275000.v1.1
pyrus_communis	pycom09g18560
rosa_chinensis	RchiOBHm_Chr2g0091411 RchiOBHm_Chr4g0385481
rosa_laevigata	RLG00000015648 RLG00000022082
rosa_multiflora	Rmu_ssc0000272.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022250
rosa_rugosa	Rorug02G0229700 Rorug02G0546400 Rorug02G0546500 Rorug02G0546600
rosa_samantha	Rh1AG195500 Rh1CG179900 Rh2AG485800 Rh2AG667300 Rh2BG482500 Rh2BG678800 Rh2CG275400 Rh2CG471600 Rh2CG508300 Rh2DG491300 Rh4CG006700 Rh4CG006800 Rh5CG262600 Rh7DG361300
rosa_wichuraiana	Rw2G040510 Rw4G000400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	132
AccI	GTMKAC	1 cut(s)	147
AciI	CCGC	1 cut(s)	100
AclWI	GGATC	1 cut(s)	56
AcsI	RAATTY	1 cut(s)	172
AjnI	CCWGG	1 cut(s)	160
AluBI	AGCT	1 cut(s)	88
AluI	AGCT	1 cut(s)	88
AlwI	GGATC	1 cut(s)	56
Ama87I	CYCGRG	1 cut(s)	74
AoxI	GGCC	1 cut(s)	81
ApoI	RAATTY	1 cut(s)	172
AspS9I	GGNCC	1 cut(s)	82
AvaI	CYCGRG	1 cut(s)	74
BaeGI	GKGCMC	1 cut(s)	135
BanI	GGYRCC	1 cut(s)	132
BbsI	GAAGAC	1 cut(s)	118
BccI	CCATC	2 cut(s)	28, 214
BciT130I	CCWGG	1 cut(s)	162
Bme1390I	CCNGG	1 cut(s)	162
BmeT110I	CYCGRG	1 cut(s)	74
BmgT120I	GGNCC	1 cut(s)	82
BmiI	GGNNCC	1 cut(s)	134
BmrFI	CCNGG	1 cut(s)	162
BpiI	GAAGAC	1 cut(s)	118
BpmI	CTGGAG	1 cut(s)	144
BpuEI	CTTGAG	2 cut(s)	89, 126
BsaJI	CCNNGG	1 cut(s)	161
BseBI	CCWGG	1 cut(s)	162
BseDI	CCNNGG	1 cut(s)	161
BseRI	GAGGAG	1 cut(s)	92
BseSI	GKGCMC	1 cut(s)	135
BseYI	CCCAGC	1 cut(s)	84
BshFI	GGCC	1 cut(s)	83
BshNI	GGYRCC	1 cut(s)	132
BsiHKCI	CYCGRG	1 cut(s)	74
BsnI	GGCC	1 cut(s)	83
BsoBI	CYCGRG	1 cut(s)	74
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp143I	GATC	1 cut(s)	61
BspACI	CCGC	1 cut(s)	100
BspANI	GGCC	1 cut(s)	83
BspLI	GGNNCC	1 cut(s)	134
BspPI	GGATC	1 cut(s)	56
BspT107I	GGYRCC	1 cut(s)	132
BssECI	CCNNGG	1 cut(s)	161
BssMI	GATC	1 cut(s)	61
Bst2UI	CCWGG	1 cut(s)	162
BstC8I	GCNNGC	1 cut(s)	154
BstKTI	GATC	1 cut(s)	64
BstMBI	GATC	1 cut(s)	61
BstMWI	GCNNNNNNNGC	1 cut(s)	99
BstNI	CCWGG	1 cut(s)	162
BstSCI	CCNGG	1 cut(s)	160
BstSLI	GKGCMC	1 cut(s)	135
BstV2I	GAAGAC	1 cut(s)	118
BsuRI	GGCC	1 cut(s)	83
Cac8I	GCNNGC	1 cut(s)	154
Cfr13I	GGNCC	1 cut(s)	82
CviJI	RGCY	4 cut(s)	5, 18, 83, 88
CviKI_1	RGCY	4 cut(s)	5, 18, 83, 88
DpnI	GATC	1 cut(s)	63
DpnII	GATC	1 cut(s)	61
Eco88I	CYCGRG	1 cut(s)	74
EcoRII	CCWGG	1 cut(s)	160
FaiI	YATR	4 cut(s)	120, 189, 198, 229
FalI	AAGNNNNNCTT	2 cut(s)	32, 64
FblI	GTMKAC	1 cut(s)	147
GsaI	CCCAGC	1 cut(s)	88
GsuI	CTGGAG	1 cut(s)	144
HaeIII	GGCC	1 cut(s)	83
HinfI	GANTC	1 cut(s)	204
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188III	TCNNGA	2 cut(s)	31, 106
Hpy8I	GTNNAC	1 cut(s)	148
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	2 cut(s)	34, 146
HpyF10VI	GCNNNNNNNGC	1 cut(s)	99
Kzo9I	GATC	1 cut(s)	61
LpnPI	CCDG	3 cut(s)	98, 147, 174
MalI	GATC	1 cut(s)	63
MboI	GATC	1 cut(s)	61
MboII	GAAGA	4 cut(s)	35, 40, 43, 118
MhlI	GDGCHC	1 cut(s)	135
MluCI	AATT	1 cut(s)	172
MnlI	CCTC	5 cut(s)	70, 73, 76, 113, 150
MspR9I	CCNGG	1 cut(s)	162
MvaI	CCWGG	1 cut(s)	162
MwoI	GCNNNNNNNGC	1 cut(s)	99
NdeII	GATC	1 cut(s)	61
NlaIV	GGNNCC	1 cut(s)	134
PaeR7I	CTCGAG	1 cut(s)	74
PcsI	WCGNNNNNNNCGW	1 cut(s)	215
PfeI	GAWTC	1 cut(s)	204
Psp6I	CCWGG	1 cut(s)	160
PspFI	CCCAGC	1 cut(s)	84
PspGI	CCWGG	1 cut(s)	160
PspN4I	GGNNCC	1 cut(s)	134
PspPI	GGNCC	1 cut(s)	82
PspXI	VCTCGAGB	1 cut(s)	74
Sau3AI	GATC	1 cut(s)	61
Sau96I	GGNCC	1 cut(s)	82
ScrFI	CCNGG	1 cut(s)	162
SduI	GDGCHC	1 cut(s)	135
SetI	ASST	3 cut(s)	90, 126, 138
Sfr274I	CTCGAG	1 cut(s)	74
SlaI	CTCGAG	1 cut(s)	74
SmlI	CTYRAG	3 cut(s)	74, 104, 141
SmoI	CTYRAG	3 cut(s)	74, 104, 141
Sse9I	AATT	1 cut(s)	172
SsiI	CCGC	1 cut(s)	100
StyD4I	CCNGG	1 cut(s)	160
TaqI	TCGA	1 cut(s)	75
TasI	AATT	1 cut(s)	172
TfiI	GAWTC	1 cut(s)	204
TspDTI	ATGAA	1 cut(s)	107
TspGWI	ACGGA	1 cut(s)	216
XapI	RAATTY	1 cut(s)	172
XhoI	CTCGAG	1 cut(s)	74
XmiI	GTMKAC	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.