Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0005927

Physical Location & Seq

Genomic Coordinates Forward (+)

30245177 .. 30246972

Gene Structure 1796 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG275400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGAGGTTTTATACTGCTGAGATAGTATCTGCTGTTTCACATCCTCACAAGTGCGGGATTGTGAATAGTAAACTTAAGCTGGAAAATCCTTCGAGGAGTCTGTCAAATATTGAGGGAAAGCTCAACACCGGCAGAAATGATGGTTTGGCCATTGATCGTGGAAGTGATTCATCTGAAGATGAGGTTGCTACTCAAAATGCAATTGGTGATGTTCCATTGCAATGGTATCGGGATGAGAATCATATTGGTTATGATCTTACAGGGAAGAAGATTAAAAAAAAGGAAAGTGAAGAGAAATTCCAATCCCTTCTTGCTAGAGCTGATGATTCCAAAAATTGGTGGGTTTTACATAGGGCTTATGGTACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030684 GO:0030686 GO:0030687 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043021 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044877 GO:0046483 GO:0070013 GO:0070545 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BOP1NT WD40

Protein Analysis

122

Amino Acids

13.75

Weight (kDa)

6.91

Isoelectric Point (pI)

39.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BOP1NT	PF08145	76 - 115	1.8e-08	BOP1NT (NUC169) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0005927)

Species	Orthologous Gene IDs
malus_domestica	MD09G1275000.v1.1
pyrus_communis	pycom09g18560
rosa_chinensis	RchiOBHm_Chr2g0091411 RchiOBHm_Chr4g0385481
rosa_laevigata	RLG00000015648 RLG00000022082
rosa_multiflora	Rmu_ssc0000272.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022250
rosa_rugosa	Rorug02G0229700 Rorug02G0546400 Rorug02G0546500 Rorug02G0546600
rosa_samantha	Rh1AG195500 Rh1CG179900 Rh2AG485800 Rh2AG667300 Rh2BG482500 Rh2BG678800 Rh2CG275400 Rh2CG471600 Rh2CG508300 Rh2DG491300 Rh4CG006700 Rh4CG006800 Rh5CG262600 Rh7DG361300
rosa_wichuraiana	Rw2G040510 Rw4G000400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	336
AciI	CCGC	1 cut(s)	54
AcoI	YGGCCR	1 cut(s)	147
AcsI	RAATTY	1 cut(s)	296
AcuI	CTGAAG	1 cut(s)	195
AfaI	GTAC	1 cut(s)	364
AfiI	CCNNNNNNNGG	1 cut(s)	336
AflII	CTTAAG	1 cut(s)	74
AluBI	AGCT	3 cut(s)	79, 121, 320
AluI	AGCT	3 cut(s)	79, 121, 320
AoxI	GGCC	1 cut(s)	147
ApoI	RAATTY	1 cut(s)	296
Asp700I	GAANNNNTTC	1 cut(s)	166
AsuHPI	GGTGA	1 cut(s)	218
BalI	TGGCCA	1 cut(s)	149
BccI	CCATC	1 cut(s)	134
BcgI	CGANNNNNNTGC	2 cut(s)	209, 243
BfaI	CTAG	1 cut(s)	315
BfrI	CTTAAG	1 cut(s)	74
BsaBI	GATNNNNATC	1 cut(s)	237
Bsc4I	CCNNNNNNNGG	1 cut(s)	336
Bse118I	RCCGGY	1 cut(s)	128
Bse3DI	GCAATG	2 cut(s)	215, 227
Bse8I	GATNNNNATC	1 cut(s)	237
BseGI	GGATG	2 cut(s)	40, 238
BseJI	GATNNNNATC	1 cut(s)	237
BseLI	CCNNNNNNNGG	1 cut(s)	336
BseMI	GCAATG	2 cut(s)	215, 227
BseMII	CTCAG	1 cut(s)	9
BseRI	GAGGAG	1 cut(s)	109
BshFI	GGCC	1 cut(s)	149
BsiSI	CCGG	1 cut(s)	129
BslI	CCNNNNNNNGG	1 cut(s)	336
BsnI	GGCC	1 cut(s)	149
Bsp143I	GATC	2 cut(s)	154, 253
BspACI	CCGC	1 cut(s)	54
BspANI	GGCC	1 cut(s)	149
BspCNI	CTCAG	1 cut(s)	10
BspTI	CTTAAG	1 cut(s)	74
BsrDI	GCAATG	2 cut(s)	215, 227
BsrFI	RCCGGY	1 cut(s)	128
BssAI	RCCGGY	1 cut(s)	128
BssMI	GATC	2 cut(s)	154, 253
Bst6I	CTCTTC	1 cut(s)	285
BstAFI	CTTAAG	1 cut(s)	74
BstDEI	CTNAG	1 cut(s)	18
BstF5I	GGATG	2 cut(s)	40, 238
BstKTI	GATC	2 cut(s)	157, 256
BstMBI	GATC	2 cut(s)	154, 253
BstXI	CCANNNNNNTGG	1 cut(s)	222
BsuRI	GGCC	1 cut(s)	149
BtsCI	GGATG	2 cut(s)	40, 238
Cfr10I	RCCGGY	1 cut(s)	128
Csp6I	GTAC	1 cut(s)	363
CviJI	RGCY	5 cut(s)	79, 121, 149, 320, 356
CviKI_1	RGCY	5 cut(s)	79, 121, 149, 320, 356
CviQI	GTAC	1 cut(s)	363
DdeI	CTNAG	1 cut(s)	18
DpnI	GATC	2 cut(s)	156, 255
DpnII	GATC	2 cut(s)	154, 253
EaeI	YGGCCR	1 cut(s)	147
Eam1104I	CTCTTC	1 cut(s)	285
EarI	CTCTTC	1 cut(s)	285
Eco57I	CTGAAG	1 cut(s)	195
FaiI	YATR	6 cut(s)	12, 243, 252, 351, 360, 367
FauI	CCCGC	1 cut(s)	47
FokI	GGATG	2 cut(s)	27, 245
FspBI	CTAG	1 cut(s)	315
HaeIII	GGCC	1 cut(s)	149
HapII	CCGG	1 cut(s)	129
HinfI	GANTC	4 cut(s)	97, 167, 238, 326
HpaII	CCGG	1 cut(s)	129
HphI	GGTGA	1 cut(s)	218
Hpy166II	GTNNAC	1 cut(s)	71
Hpy188I	TCNGA	1 cut(s)	175
Hpy188III	TCNNGA	1 cut(s)	230
Hpy8I	GTNNAC	1 cut(s)	71
HpyAV	CCTTC	2 cut(s)	99, 317
HpyCH4V	TGCA	2 cut(s)	200, 220
HpyF3I	CTNAG	1 cut(s)	18
Kzo9I	GATC	2 cut(s)	154, 253
LpnPI	CCDG	3 cut(s)	65, 142, 246
MaeI	CTAG	1 cut(s)	315
MalI	GATC	2 cut(s)	156, 255
MboI	GATC	2 cut(s)	154, 253
MboII	GAAGA	4 cut(s)	188, 277, 280, 302
MfeI	CAATTG	1 cut(s)	201
MlsI	TGGCCA	1 cut(s)	149
MluCI	AATT	3 cut(s)	201, 296, 334
MluNI	TGGCCA	1 cut(s)	149
MlyI	GAGTC	1 cut(s)	106
MnlI	CCTC	4 cut(s)	54, 87, 106, 175
Mox20I	TGGCCA	1 cut(s)	149
MroXI	GAANNNNTTC	1 cut(s)	166
MscI	TGGCCA	1 cut(s)	149
MseI	TTAA	2 cut(s)	75, 273
MslI	CAYNNNNRTG	1 cut(s)	220
Msp20I	TGGCCA	1 cut(s)	149
MspCI	CTTAAG	1 cut(s)	74
MspI	CCGG	1 cut(s)	129
MunI	CAATTG	1 cut(s)	201
NdeII	GATC	2 cut(s)	154, 253
PdmI	GAANNNNTTC	1 cut(s)	166
PfeI	GAWTC	3 cut(s)	167, 238, 326
PflMI	CCANNNNNTGG	1 cut(s)	336
PleI	GAGTC	1 cut(s)	105
PpsI	GAGTC	1 cut(s)	105
RsaI	GTAC	1 cut(s)	364
RsaNI	GTAC	1 cut(s)	363
RseI	CAYNNNNRTG	1 cut(s)	220
SaqAI	TTAA	2 cut(s)	75, 273
Sau3AI	GATC	2 cut(s)	154, 253
SchI	GAGTC	1 cut(s)	106
SetI	ASST	5 cut(s)	8, 81, 123, 186, 322
SmiMI	CAYNNNNRTG	1 cut(s)	220
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
Sse9I	AATT	3 cut(s)	201, 296, 334
SsiI	CCGC	1 cut(s)	54
SspI	AATATT	1 cut(s)	109
SspMI	CTAG	1 cut(s)	315
TaqI	TCGA	1 cut(s)	92
TasI	AATT	3 cut(s)	201, 296, 334
TfiI	GAWTC	3 cut(s)	167, 238, 326
Tru1I	TTAA	2 cut(s)	75, 273
Tru9I	TTAA	2 cut(s)	75, 273
TspDTI	ATGAA	1 cut(s)	159
Van91I	CCANNNNNTGG	1 cut(s)	336
Vha464I	CTTAAG	1 cut(s)	74
XapI	RAATTY	1 cut(s)	296
XmnI	GAANNNNTTC	1 cut(s)	166
XspI	CTAG	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.