Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005927

Physical Location & Seq

Genomic Coordinates Reverse (-)

67514733 .. 67515794

Gene Structure 1062 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0546400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGTCACGGACACATACACAGCTGAGTTACCCGACAATTTCATCCACCAAGTCCTCTCTCTCCTTTCCACCAAACACGCCGTCCGGGCCGGCATTCTTTCGAAGGAATGGGGGCACTTATGGTCTTCGGTTCCTGTGTTAGATTTCGACGAGGATGAGGATGTGCAGCCATCTGCTGATAACTGTAAGCTTAAACGAAAAATGTTCATCAACTTCATGAGAAGGTGTTTGAAGCGCCGTGGAAAAGATGAGTCTAACATTGAGAAGTTTAGGCTTCACATGAGGTACTTTGGAGGTGCTACTATTGTAAACAAGTGGTTGAGTTTAGCGGTTGAGAGAAATGTTAAAGAGCTACAAATCTCCTTTATAAGAGAAAGAGAATCCGGGGTGAGATCTTACAGACCCTTCTACTTACCACAAGCAATTCTCAACAATGCAAAATCCTTAACCACCCTAAAGTTGCAGAGTGTGACTGTGAAGGACAGCATTGACCCTATAAACCTTCCTTCCTTGAAAACTATGTCCCTAAAACTAGTGCAATTCAGGAGTACCTTGTCATTCTTGCACTTAATTTCCGGATGCCCTTCTCTTGAGCATTTCTTGTTAACTTCGTGCACTGGCCTCTCGGATCTTAAGATTTTGAGTTTGAGCCTCAAATCCTTGGAAGTTGTTGATTGCGACGTGCGGGGTATTCAAGTTGAAGCTGAGAATCTCGAATCTTTTAAGTTTCATGGAAACGTTTTTAGCCGGTATATGTGGCACATCTTTAACATTTTCTCATGTCAAAGAGTTAGAAGCATTGAGTTCTCTGACATATTCTTGACAAGCGAATGGTGTGAAGGCTTCAATTCGAGTTTTCCCCTGCTCGAGAGTTTTATTTTGCATAAATGCCACTGGAATTCCTGGGAACACATAAAATTCTTTAGCCAGAACCTGAAACGTTTTGTATTTTCTGATTCAGAACCCGTCAAGCCTTTCTTTTCTATGAACTTTCCAAATTTATTGGAGGCTAGAATCGACCTCTCGCATAGACCTGGGGGGTCTGCTGGTCTCTTTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004335 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006012 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0019318 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N GalKase_gal_bdg

Protein Analysis

353

Amino Acids

40.82

Weight (kDa)

8.71

Isoelectric Point (pI)

51.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At1g61320_AtMIF1	PF23622	100 - 250	9.7e-17	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	104 - 245	6.6e-14	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005927)

Species	Orthologous Gene IDs
malus_domestica	MD09G1275000.v1.1
pyrus_communis	pycom09g18560
rosa_chinensis	RchiOBHm_Chr2g0091411 RchiOBHm_Chr4g0385481
rosa_laevigata	RLG00000015648 RLG00000022082
rosa_multiflora	Rmu_ssc0000272.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022250
rosa_rugosa	Rorug02G0229700 Rorug02G0546400 Rorug02G0546500 Rorug02G0546600
rosa_samantha	Rh1AG195500 Rh1CG179900 Rh2AG485800 Rh2AG667300 Rh2BG482500 Rh2BG678800 Rh2CG275400 Rh2CG471600 Rh2CG508300 Rh2DG491300 Rh4CG006700 Rh4CG006800 Rh5CG262600 Rh7DG361300
rosa_wichuraiana	Rw2G040510 Rw4G000400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	368
AccIII	TCCGGA	1 cut(s)	575
AciI	CCGC	2 cut(s)	329, 685
AclI	AACGTT	2 cut(s)	738, 940
AclWI	GGATC	1 cut(s)	636
AcsI	RAATTY	3 cut(s)	898, 917, 997
AfaI	GTAC	2 cut(s)	287, 550
AflII	CTTAAG	1 cut(s)	632
AgsI	TTSAA	5 cut(s)	232, 514, 695, 701, 847
AhlI	ACTAGT	1 cut(s)	532
AjiI	CACGTC	1 cut(s)	682
AjnI	CCWGG	2 cut(s)	902, 1033
AluBI	AGCT	4 cut(s)	23, 190, 352, 704
AluI	AGCT	4 cut(s)	23, 190, 352, 704
Alw21I	GWGCWC	1 cut(s)	617
Alw26I	GTCTC	1 cut(s)	1055
Alw44I	GTGCAC	1 cut(s)	613
AlwI	GGATC	1 cut(s)	636
AlwNI	CAGNNNCTG	1 cut(s)	934
Ama87I	CYCGRG	1 cut(s)	866
Aor13HI	TCCGGA	1 cut(s)	575
AoxI	GGCC	2 cut(s)	87, 619
ApaLI	GTGCAC	1 cut(s)	613
ApeKI	GCWGC	1 cut(s)	166
ApoI	RAATTY	3 cut(s)	898, 917, 997
ArsI	GACNNNNNNTTYG	2 cut(s)	66, 98
AspLEI	GCGC	1 cut(s)	237
AspS9I	GGNCC	1 cut(s)	87
AsuC2I	CCSGG	2 cut(s)	86, 385
AsuHPI	GGTGA	1 cut(s)	400
AsuII	TTCGAA	1 cut(s)	101
AvaI	CYCGRG	1 cut(s)	866
BaeGI	GKGCMC	2 cut(s)	117, 617
BbsI	GAAGAC	1 cut(s)	117
Bbv12I	GWGCWC	1 cut(s)	617
BbvI	GCAGC	1 cut(s)	178
BccI	CCATC	1 cut(s)	178
BceAI	ACGGC	2 cut(s)	65, 222
BciT130I	CCWGG	2 cut(s)	904, 1035
BcnI	CCSGG	2 cut(s)	86, 385
BcoDI	GTCTC	1 cut(s)	1055
BcuI	ACTAGT	1 cut(s)	532
BfaI	CTAG	2 cut(s)	533, 1011
BfoI	RGCGCY	1 cut(s)	238
BfrI	CTTAAG	1 cut(s)	632
BglI	GCCNNNNNGGC	1 cut(s)	86
BglII	AGATCT	1 cut(s)	392
BisI	GCNGC	1 cut(s)	167
BlsI	GCNGC	1 cut(s)	168
Bme1390I	CCNGG	4 cut(s)	86, 385, 904, 1035
BmeT110I	CYCGRG	1 cut(s)	866
BmgBI	CACGTC	1 cut(s)	682
BmgT120I	GGNCC	1 cut(s)	87
BmiI	GGNNCC	1 cut(s)	132
BmrFI	CCNGG	4 cut(s)	86, 385, 904, 1035
BmsI	GCATC	1 cut(s)	569
BpiI	GAAGAC	1 cut(s)	117
Bpu14I	TTCGAA	1 cut(s)	101
BpuEI	CTTGAG	1 cut(s)	611
BpuMI	CCSGG	2 cut(s)	86, 385
BsaI	GGTCTC	1 cut(s)	1055
BsaJI	CCNNGG	5 cut(s)	238, 384, 660, 903, 1034
BsaWI	WCCGGW	1 cut(s)	575
Bse118I	RCCGGY	2 cut(s)	89, 747
Bse1I	ACTGG	2 cut(s)	622, 899
BseAI	TCCGGA	1 cut(s)	575
BseBI	CCWGG	2 cut(s)	904, 1035
BseDI	CCNNGG	5 cut(s)	238, 384, 660, 903, 1034
BseGI	GGATG	4 cut(s)	42, 160, 166, 584
BseMII	CTCAG	2 cut(s)	15, 696
BseNI	ACTGG	2 cut(s)	622, 899
BseSI	GKGCMC	2 cut(s)	117, 617
BseXI	GCAGC	1 cut(s)	178
BsgI	GTGCAG	1 cut(s)	185
BshFI	GGCC	2 cut(s)	89, 621
BsiHKAI	GWGCWC	1 cut(s)	617
BsiHKCI	CYCGRG	1 cut(s)	866
BsiSI	CCGG	5 cut(s)	85, 90, 384, 576, 748
BslFI	GGGAC	1 cut(s)	508
BsmAI	GTCTC	1 cut(s)	1055
BsmFI	GGGAC	1 cut(s)	508
BsmI	GAATGC	1 cut(s)	93
BsnI	GGCC	2 cut(s)	89, 621
Bso31I	GGTCTC	1 cut(s)	1055
BsoBI	CYCGRG	1 cut(s)	866
Bsp119I	TTCGAA	1 cut(s)	101
Bsp1286I	GDGCHC	2 cut(s)	117, 617
Bsp13I	TCCGGA	1 cut(s)	575
Bsp143I	GATC	2 cut(s)	392, 628
BspACI	CCGC	2 cut(s)	329, 685
BspANI	GGCC	2 cut(s)	89, 621
BspCNI	CTCAG	2 cut(s)	16, 697
BspEI	TCCGGA	1 cut(s)	575
BspHI	TCATGA	1 cut(s)	216
BspLI	GGNNCC	1 cut(s)	132
BspPI	GGATC	1 cut(s)	636
BspT104I	TTCGAA	1 cut(s)	101
BspTI	CTTAAG	1 cut(s)	632
BspTNI	GGTCTC	1 cut(s)	1055
BsrFI	RCCGGY	2 cut(s)	89, 747
BsrI	ACTGG	2 cut(s)	622, 899
BssAI	RCCGGY	2 cut(s)	89, 747
BssECI	CCNNGG	5 cut(s)	238, 384, 660, 903, 1034
BssMI	GATC	2 cut(s)	392, 628
BssT1I	CCWWGG	1 cut(s)	660
Bst2UI	CCWGG	2 cut(s)	904, 1035
Bst4CI	ACNGT	2 cut(s)	185, 475
BstAFI	CTTAAG	1 cut(s)	632
BstBI	TTCGAA	1 cut(s)	101
BstC8I	GCNNGC	1 cut(s)	91
BstDEI	CTNAG	2 cut(s)	24, 705
BstDSI	CCRYGG	1 cut(s)	238
BstF5I	GGATG	4 cut(s)	42, 160, 166, 584
BstH2I	RGCGCY	1 cut(s)	238
BstHHI	GCGC	1 cut(s)	237
BstKTI	GATC	2 cut(s)	395, 631
BstMAI	GTCTC	1 cut(s)	1055
BstMBI	GATC	2 cut(s)	392, 628
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstNI	CCWGG	2 cut(s)	904, 1035
BstSCI	CCNGG	4 cut(s)	84, 383, 902, 1033
BstSLI	GKGCMC	2 cut(s)	117, 617
BstV1I	GCAGC	1 cut(s)	178
BstV2I	GAAGAC	1 cut(s)	117
BstX2I	RGATCY	2 cut(s)	392, 628
BstYI	RGATCY	2 cut(s)	392, 628
BsuRI	GGCC	2 cut(s)	89, 621
BtgI	CCRYGG	1 cut(s)	238
BtrI	CACGTC	1 cut(s)	682
BtsCI	GGATG	4 cut(s)	42, 160, 166, 584
BtsIMutI	CAGTG	2 cut(s)	615, 892
Cac8I	GCNNGC	1 cut(s)	91
CaiI	CAGNNNCTG	1 cut(s)	934
CciI	TCATGA	1 cut(s)	216
CfoI	GCGC	1 cut(s)	237
Cfr10I	RCCGGY	2 cut(s)	89, 747
Cfr13I	GGNCC	1 cut(s)	87
Csp6I	GTAC	2 cut(s)	286, 549
CviAII	CATG	5 cut(s)	217, 280, 731, 780, 1059
CviQI	GTAC	2 cut(s)	286, 549
DdeI	CTNAG	2 cut(s)	24, 705
DpnI	GATC	2 cut(s)	394, 630
DpnII	GATC	2 cut(s)	392, 628
Eco130I	CCWWGG	1 cut(s)	660
Eco31I	GGTCTC	1 cut(s)	1055
Eco88I	CYCGRG	1 cut(s)	866
EcoRI	GAATTC	1 cut(s)	898
EcoRII	CCWGG	2 cut(s)	902, 1033
EcoT14I	CCWWGG	1 cut(s)	660
ErhI	CCWWGG	1 cut(s)	660
FaeI	CATG	5 cut(s)	220, 283, 734, 783, 1062
FalI	AAGNNNNNCTT	2 cut(s)	962, 994
FaqI	GGGAC	1 cut(s)	508
FatI	CATG	5 cut(s)	216, 279, 730, 779, 1058
FauI	CCCGC	1 cut(s)	678
Fnu4HI	GCNGC	1 cut(s)	167
FokI	GGATG	4 cut(s)	29, 167, 173, 591
Fsp4HI	GCNGC	1 cut(s)	167
FspBI	CTAG	2 cut(s)	533, 1011
GlaI	GCGC	1 cut(s)	236
GluI	GCNGC	1 cut(s)	167
HaeII	RGCGCY	1 cut(s)	238
HaeIII	GGCC	2 cut(s)	89, 621
HapII	CCGG	5 cut(s)	85, 90, 384, 576, 748
HhaI	GCGC	1 cut(s)	237
Hin1II	CATG	5 cut(s)	220, 283, 734, 783, 1062
Hin6I	GCGC	1 cut(s)	235
HinP1I	GCGC	1 cut(s)	235
HincII	GTYRAC	1 cut(s)	606
HindII	GTYRAC	1 cut(s)	606
HindIII	AAGCTT	1 cut(s)	188
HinfI	GANTC	6 cut(s)	251, 380, 709, 716, 956, 1014
HpaI	GTTAAC	1 cut(s)	606
HpaII	CCGG	5 cut(s)	85, 90, 384, 576, 748
HphI	GGTGA	1 cut(s)	400
Hpy166II	GTNNAC	3 cut(s)	310, 606, 615
Hpy188I	TCNGA	4 cut(s)	628, 811, 955, 961
Hpy188III	TCNNGA	7 cut(s)	217, 544, 576, 590, 713, 820, 868
Hpy8I	GTNNAC	3 cut(s)	310, 606, 615
Hpy99I	CGWCG	2 cut(s)	152, 683
HpyAV	CCTTC	8 cut(s)	97, 216, 415, 472, 512, 516, 594, 833
HpyCH4III	ACNGT	2 cut(s)	185, 475
HpyCH4IV	ACGT	3 cut(s)	681, 738, 940
HpyCH4V	TGCA	7 cut(s)	166, 437, 463, 538, 565, 615, 883
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpyF3I	CTNAG	2 cut(s)	24, 705
HpySE526I	ACGT	3 cut(s)	681, 738, 940
Hsp92II	CATG	5 cut(s)	220, 283, 734, 783, 1062
HspAI	GCGC	1 cut(s)	235
Kpn2I	TCCGGA	1 cut(s)	575
KroI	GCCGGC	1 cut(s)	89
KroNI	GCCGGC	1 cut(s)	91
KspAI	GTTAAC	1 cut(s)	606
Kzo9I	GATC	2 cut(s)	392, 628
Lsp1109I	GCAGC	1 cut(s)	178
LweI	GCATC	1 cut(s)	569
MaeI	CTAG	2 cut(s)	533, 1011
MaeII	ACGT	3 cut(s)	681, 738, 940
MaeIII	GTNAC	3 cut(s)	4, 27, 469
MalI	GATC	2 cut(s)	394, 630
MboI	GATC	2 cut(s)	392, 628
MboII	GAAGA	1 cut(s)	117
MflI	RGATCY	2 cut(s)	392, 628
MhlI	GDGCHC	2 cut(s)	117, 617
MluCI	AATT	8 cut(s)	37, 423, 539, 570, 847, 898, 917, 997
MlyI	GAGTC	1 cut(s)	260
MnlI	CCTC	9 cut(s)	65, 145, 151, 276, 287, 632, 662, 1000, 1031
MroI	TCCGGA	1 cut(s)	575
MroNI	GCCGGC	1 cut(s)	89
MseI	TTAA	8 cut(s)	192, 345, 446, 569, 605, 633, 723, 768
MspA1I	CMGCKG	1 cut(s)	23
MspCI	CTTAAG	1 cut(s)	632
MspI	CCGG	5 cut(s)	85, 90, 384, 576, 748
MspR9I	CCNGG	4 cut(s)	86, 385, 904, 1035
Mva1269I	GAATGC	1 cut(s)	93
MvaI	CCWGG	2 cut(s)	904, 1035
MwoI	GCNNNNNNNGC	1 cut(s)	86
NaeI	GCCGGC	1 cut(s)	91
NciI	CCSGG	2 cut(s)	86, 385
NdeII	GATC	2 cut(s)	392, 628
NgoMIV	GCCGGC	1 cut(s)	89
NlaIII	CATG	5 cut(s)	220, 283, 734, 783, 1062
NlaIV	GGNNCC	1 cut(s)	132
NmuCI	GTSAC	2 cut(s)	4, 469
NspV	TTCGAA	1 cut(s)	101
PaeR7I	CTCGAG	1 cut(s)	866
PagI	TCATGA	1 cut(s)	216
PctI	GAATGC	1 cut(s)	93
PdiI	GCCGGC	1 cut(s)	91
PfeI	GAWTC	5 cut(s)	380, 709, 716, 956, 1014
PkrI	GCNGC	1 cut(s)	168
PleI	GAGTC	1 cut(s)	259
PpsI	GAGTC	1 cut(s)	259
PsiI	TTATAA	1 cut(s)	368
Psp1406I	AACGTT	2 cut(s)	738, 940
Psp6I	CCWGG	2 cut(s)	902, 1033
PspGI	CCWGG	2 cut(s)	902, 1033
PspN4I	GGNNCC	1 cut(s)	132
PspPI	GGNCC	1 cut(s)	87
PstNI	CAGNNNCTG	1 cut(s)	934
PsuI	RGATCY	2 cut(s)	392, 628
PvuII	CAGCTG	1 cut(s)	23
RsaI	GTAC	2 cut(s)	287, 550
RsaNI	GTAC	2 cut(s)	286, 549
SaqAI	TTAA	8 cut(s)	192, 345, 446, 569, 605, 633, 723, 768
SatI	GCNGC	1 cut(s)	167
Sau3AI	GATC	2 cut(s)	392, 628
Sau96I	GGNCC	1 cut(s)	87
SchI	GAGTC	1 cut(s)	260
ScrFI	CCNGG	4 cut(s)	86, 385, 904, 1035
SduI	GDGCHC	2 cut(s)	117, 617
SfaNI	GCATC	1 cut(s)	569
Sfr274I	CTCGAG	1 cut(s)	866
SfuI	TTCGAA	1 cut(s)	101
SlaI	CTCGAG	1 cut(s)	866
SmlI	CTYRAG	3 cut(s)	590, 632, 866
SmoI	CTYRAG	3 cut(s)	590, 632, 866
SpeI	ACTAGT	1 cut(s)	532
Sse9I	AATT	8 cut(s)	37, 423, 539, 570, 847, 898, 917, 997
SsiI	CCGC	2 cut(s)	329, 685
SspMI	CTAG	2 cut(s)	533, 1011
StyD4I	CCNGG	4 cut(s)	84, 383, 902, 1033
StyI	CCWWGG	1 cut(s)	660
TaaI	ACNGT	2 cut(s)	185, 475
TaiI	ACGT	3 cut(s)	684, 741, 943
TaqI	TCGA	6 cut(s)	101, 147, 714, 851, 867, 1017
TasI	AATT	8 cut(s)	37, 423, 539, 570, 847, 898, 917, 997
TfiI	GAWTC	5 cut(s)	380, 709, 716, 956, 1014
Tru1I	TTAA	8 cut(s)	192, 345, 446, 569, 605, 633, 723, 768
Tru9I	TTAA	8 cut(s)	192, 345, 446, 569, 605, 633, 723, 768
TscAI	CASTG	2 cut(s)	622, 899
TseFI	GTSAC	2 cut(s)	4, 469
TseI	GCWGC	1 cut(s)	166
Tsp45I	GTSAC	2 cut(s)	4, 469
TspDTI	ATGAA	5 cut(s)	31, 196, 205, 719, 1001
TspGWI	ACGGA	1 cut(s)	23
TspRI	CASTG	2 cut(s)	622, 899
Vha464I	CTTAAG	1 cut(s)	632
VneI	GTGCAC	1 cut(s)	613
XapI	RAATTY	3 cut(s)	898, 917, 997
XhoI	CTCGAG	1 cut(s)	866
XspI	CTAG	2 cut(s)	533, 1011

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.