Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0005927

Physical Location & Seq

Genomic Coordinates Reverse (-)

395254 .. 399813

Gene Structure 4560 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015648

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGTTCTCATGGATGCTGATGGGCACAAATGGCTATGCTCATTCACTTGCTTCTGTTGCAACTATTGCTGTGGATGCCTTATCAGTTTGCATGATTATTAATGGTTGGGAACCTCATGATACCTTTAGCCTTCGAGGAGTCTGTCAAATAGTGAGGGAAAGCTCAACACCGGCAGAAATGATGATAAGGTTGCTACTACAAATGCAATTGGTGATGTTCCATTGCAATGGTGTCGGGTTGAGAAGCATATTGGTTATGATGTTACAGGGAAGAAGATTAAAAAGAAGGAAAGTGAAGAGAAATTCCAATCCTTCCTTGCTAGAGCTGATGATTCAAAAAATTGGTGGGTTTTACATTCTGCTTATGGTACATAGGCTGATGCATACATTCTATTGTGCAGCAGCCGTCCATTTGGGCCTTGGAACTGAGTTTGGCATGGTATTAGGGGCCTTCTCATCAGCTCTGGAGCAGAAAGAGAAGATTGGGTTGAAAACAAGTGGAACAGATAGAGGTTCTGGGCGGTTGGTTGGGCTGATTAGGGAAAACGGTGGAGCTACAGACGCCAAAAATCTACGGGTGAAGATTATGTTTTTAAGTTTTAGTCTTGACATAGAGAGAAATGCACATGGATTGAAATTTTCTACTTACTGCTCTGGTTTTGTAGTGTTTTTCAAGGAATTTATACTGGAGTTATTACTATTACAACACCTGGAAGGTAAAGGAGTTTCAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0006810 GO:0008150 GO:0010008 GO:0010009 GO:0012505 GO:0016020 GO:0016192 GO:0016462 GO:0016482 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0031090 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045022 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0097708 GO:0098552 GO:0098562 GO:0098588 GO:0098805 GO:0098927

KEGG Pathways

Metabolic & Signaling

ko04014 ko04144 ko04145 ko04962 ko05014 ko05146 ko05152 map04014 map04144 map04145 map04962 map05014 map05146 map05152

Pfam Domains

Protein Families

Ras

Protein Analysis

245

Amino Acids

27.15

Weight (kDa)

9.64

Isoelectric Point (pI)

32.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005927)

Species	Orthologous Gene IDs
malus_domestica	MD09G1275000.v1.1
pyrus_communis	pycom09g18560
rosa_chinensis	RchiOBHm_Chr2g0091411 RchiOBHm_Chr4g0385481
rosa_laevigata	RLG00000015648 RLG00000022082
rosa_multiflora	Rmu_ssc0000272.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022250
rosa_rugosa	Rorug02G0229700 Rorug02G0546400 Rorug02G0546500 Rorug02G0546600
rosa_samantha	Rh1AG195500 Rh1CG179900 Rh2AG485800 Rh2AG667300 Rh2BG482500 Rh2BG678800 Rh2CG275400 Rh2CG471600 Rh2CG508300 Rh2DG491300 Rh4CG006700 Rh4CG006800 Rh5CG262600 Rh7DG361300
rosa_wichuraiana	Rw2G040510 Rw4G000400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	520
AcsI	RAATTY	3 cut(s)	301, 635, 677
AcyI	GRCGYC	1 cut(s)	561
AfaI	GTAC	1 cut(s)	369
AgsI	TTSAA	4 cut(s)	335, 490, 634, 673
AjnI	CCWGG	1 cut(s)	708
AluBI	AGCT	4 cut(s)	162, 325, 461, 554
AluI	AGCT	4 cut(s)	162, 325, 461, 554
AoxI	GGCC	2 cut(s)	415, 447
ApeKI	GCWGC	2 cut(s)	398, 401
ApoI	RAATTY	3 cut(s)	301, 635, 677
AseI	ATTAAT	1 cut(s)	99
AspS9I	GGNCC	2 cut(s)	415, 447
AsuHPI	GGTGA	2 cut(s)	223, 589
BaeGI	GKGCMC	1 cut(s)	26
BbvI	GCAGC	2 cut(s)	410, 413
BccI	CCATC	1 cut(s)	13
BceAI	ACGGC	1 cut(s)	389
BcgI	CGANNNNNNTGC	2 cut(s)	214, 248
BciT130I	CCWGG	1 cut(s)	710
BfaI	CTAG	2 cut(s)	320, 733
BfmI	CTRYAG	1 cut(s)	555
BisI	GCNGC	2 cut(s)	399, 402
BlsI	GCNGC	2 cut(s)	400, 403
Bme1390I	CCNGG	1 cut(s)	710
BmgT120I	GGNCC	2 cut(s)	415, 447
BmiI	GGNNCC	2 cut(s)	111, 448
BmrFI	CCNGG	1 cut(s)	710
BmsI	GCATC	3 cut(s)	3, 64, 369
BpmI	CTGGAG	2 cut(s)	485, 707
BsaHI	GRCGYC	1 cut(s)	561
BsaJI	CCNNGG	1 cut(s)	418
BsaXI	ACNNNNNCTCC	1 cut(s)	714
Bse118I	RCCGGY	1 cut(s)	169
Bse1I	ACTGG	1 cut(s)	690
Bse3DI	GCAATG	2 cut(s)	220, 232
BseBI	CCWGG	1 cut(s)	710
BseDI	CCNNGG	1 cut(s)	418
BseGI	GGATG	2 cut(s)	18, 79
BseMI	GCAATG	2 cut(s)	220, 232
BseMII	CTCAG	1 cut(s)	417
BseNI	ACTGG	1 cut(s)	690
BseRI	GAGGAG	1 cut(s)	150
BseSI	GKGCMC	1 cut(s)	26
BseXI	GCAGC	2 cut(s)	410, 413
BsgI	GTGCAG	1 cut(s)	417
BshFI	GGCC	2 cut(s)	417, 449
BsiSI	CCGG	1 cut(s)	170
BsnI	GGCC	2 cut(s)	417, 449
Bsp1286I	GDGCHC	1 cut(s)	26
BspACI	CCGC	1 cut(s)	520
BspANI	GGCC	2 cut(s)	417, 449
BspCNI	CTCAG	1 cut(s)	418
BspHI	TCATGA	1 cut(s)	115
BspLI	GGNNCC	2 cut(s)	111, 448
BsrDI	GCAATG	2 cut(s)	220, 232
BsrFI	RCCGGY	1 cut(s)	169
BsrI	ACTGG	1 cut(s)	690
BssAI	RCCGGY	1 cut(s)	169
BssECI	CCNNGG	1 cut(s)	418
BssNI	GRCGYC	1 cut(s)	561
BssT1I	CCWWGG	1 cut(s)	418
Bst2UI	CCWGG	1 cut(s)	710
Bst4CI	ACNGT	1 cut(s)	548
Bst6I	CTCTTC	1 cut(s)	290
BstACI	GRCGYC	1 cut(s)	561
BstAPI	GCANNNNNTGC	1 cut(s)	65
BstDEI	CTNAG	1 cut(s)	426
BstF5I	GGATG	2 cut(s)	18, 79
BstMWI	GCNNNNNNNGC	5 cut(s)	30, 56, 65, 74, 560
BstNI	CCWGG	1 cut(s)	710
BstSCI	CCNGG	1 cut(s)	708
BstSFI	CTRYAG	1 cut(s)	555
BstSLI	GKGCMC	1 cut(s)	26
BstV1I	GCAGC	2 cut(s)	410, 413
BstXI	CCANNNNNNTGG	1 cut(s)	227
BsuRI	GGCC	2 cut(s)	417, 449
BtsCI	GGATG	2 cut(s)	18, 79
CciI	TCATGA	1 cut(s)	115
Cfr10I	RCCGGY	1 cut(s)	169
Cfr13I	GGNCC	2 cut(s)	415, 447
CseI	GACGC	1 cut(s)	569
Csp6I	GTAC	1 cut(s)	368
CviAII	CATG	5 cut(s)	9, 91, 116, 436, 626
CviQI	GTAC	1 cut(s)	368
DdeI	CTNAG	1 cut(s)	426
Eam1104I	CTCTTC	1 cut(s)	290
EarI	CTCTTC	1 cut(s)	290
Eco130I	CCWWGG	1 cut(s)	418
EcoO109I	RGGNCCY	1 cut(s)	447
EcoRII	CCWGG	1 cut(s)	708
EcoT14I	CCWWGG	1 cut(s)	418
EcoT22I	ATGCAT	1 cut(s)	384
ErhI	CCWWGG	1 cut(s)	418
FaeI	CATG	5 cut(s)	12, 94, 119, 439, 629
FatI	CATG	5 cut(s)	8, 90, 115, 435, 625
Fnu4HI	GCNGC	2 cut(s)	399, 402
FokI	GGATG	2 cut(s)	25, 86
Fsp4HI	GCNGC	2 cut(s)	399, 402
FspBI	CTAG	2 cut(s)	320, 733
GluI	GCNGC	2 cut(s)	399, 402
GsuI	CTGGAG	2 cut(s)	485, 707
HaeIII	GGCC	2 cut(s)	417, 449
HapII	CCGG	1 cut(s)	170
HgaI	GACGC	1 cut(s)	569
Hin1I	GRCGYC	1 cut(s)	561
Hin1II	CATG	5 cut(s)	12, 94, 119, 439, 629
HinfI	GANTC	2 cut(s)	138, 331
HpaII	CCGG	1 cut(s)	170
HphI	GGTGA	2 cut(s)	223, 589
Hpy188III	TCNNGA	3 cut(s)	116, 464, 605
HpyAV	CCTTC	5 cut(s)	140, 279, 321, 460, 707
HpyCH4III	ACNGT	1 cut(s)	548
HpyCH4V	TGCA	7 cut(s)	59, 90, 205, 225, 382, 398, 623
HpyF10VI	GCNNNNNNNGC	5 cut(s)	30, 56, 65, 74, 560
HpyF3I	CTNAG	1 cut(s)	426
Hsp92I	GRCGYC	1 cut(s)	561
Hsp92II	CATG	5 cut(s)	12, 94, 119, 439, 629
LmnI	GCTCC	2 cut(s)	466, 551
LpnPI	CCDG	8 cut(s)	183, 251, 449, 501, 639, 671, 695, 722
Lsp1109I	GCAGC	2 cut(s)	410, 413
LweI	GCATC	3 cut(s)	3, 64, 369
MaeI	CTAG	2 cut(s)	320, 733
MaeIII	GTNAC	1 cut(s)	261
MboII	GAAGA	5 cut(s)	282, 285, 307, 490, 592
MfeI	CAATTG	1 cut(s)	206
MhlI	GDGCHC	1 cut(s)	26
MluCI	AATT	5 cut(s)	206, 301, 339, 635, 677
MlyI	GAGTC	1 cut(s)	147
MnlI	CCTC	4 cut(s)	123, 128, 147, 503
Mph1103I	ATGCAT	1 cut(s)	384
MseI	TTAA	3 cut(s)	99, 278, 593
MslI	CAYNNNNRTG	1 cut(s)	225
MspI	CCGG	1 cut(s)	170
MspR9I	CCNGG	1 cut(s)	710
MunI	CAATTG	1 cut(s)	206
MvaI	CCWGG	1 cut(s)	710
MwoI	GCNNNNNNNGC	5 cut(s)	30, 56, 65, 74, 560
NlaIII	CATG	5 cut(s)	12, 94, 119, 439, 629
NlaIV	GGNNCC	2 cut(s)	111, 448
NsiI	ATGCAT	1 cut(s)	384
PagI	TCATGA	1 cut(s)	115
PfeI	GAWTC	1 cut(s)	331
PkrI	GCNGC	2 cut(s)	400, 403
PleI	GAGTC	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	146
PshBI	ATTAAT	1 cut(s)	99
Psp6I	CCWGG	1 cut(s)	708
PspGI	CCWGG	1 cut(s)	708
PspN4I	GGNNCC	2 cut(s)	111, 448
PspPI	GGNCC	2 cut(s)	415, 447
RsaI	GTAC	1 cut(s)	369
RsaNI	GTAC	1 cut(s)	368
RseI	CAYNNNNRTG	1 cut(s)	225
SaqAI	TTAA	3 cut(s)	99, 278, 593
SatI	GCNGC	2 cut(s)	399, 402
Sau96I	GGNCC	2 cut(s)	415, 447
SchI	GAGTC	1 cut(s)	147
ScrFI	CCNGG	1 cut(s)	710
SduI	GDGCHC	1 cut(s)	26
SfaNI	GCATC	3 cut(s)	3, 64, 369
SfcI	CTRYAG	1 cut(s)	555
SmiMI	CAYNNNNRTG	1 cut(s)	225
Sse9I	AATT	5 cut(s)	206, 301, 339, 635, 677
SsiI	CCGC	1 cut(s)	520
SspMI	CTAG	2 cut(s)	320, 733
StyD4I	CCNGG	1 cut(s)	708
StyI	CCWWGG	1 cut(s)	418
TaaI	ACNGT	1 cut(s)	548
TaqI	TCGA	1 cut(s)	133
TasI	AATT	5 cut(s)	206, 301, 339, 635, 677
TfiI	GAWTC	1 cut(s)	331
Tru1I	TTAA	3 cut(s)	99, 278, 593
Tru9I	TTAA	3 cut(s)	99, 278, 593
TseI	GCWGC	2 cut(s)	398, 401
VspI	ATTAAT	1 cut(s)	99
XapI	RAATTY	3 cut(s)	301, 635, 677
XcmI	CCANNNNNNNNNTGG	1 cut(s)	416
XspI	CTAG	2 cut(s)	320, 733
Zsp2I	ATGCAT	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.