Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0005927

Physical Location & Seq

Genomic Coordinates Forward (+)

68042425 .. 68043105

Gene Structure 681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG508300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGAAAAGTGGTTCTTCCGAAAATGAGGTTGCTCCTCGAAATACAATAGGTGCTAATACAATTGGTGTTGTTCCTTTGGATTGGTATCGGGATGAGAAACGTATTGGTTATGATCTTACAGTGAAGAAGATTAAAAGGAAGGAAAGAGAAGACAGATTGCAATCCTTTCTTGCTAATGCTGATGATTCCAAAATTTGGTGGGTTTTAGTTTCTAAGATGATATCTATCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030684 GO:0030686 GO:0030687 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043021 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044877 GO:0046483 GO:0070013 GO:0070545 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BOP1NT WD40

Protein Analysis

77

Amino Acids

8.88

Weight (kDa)

9.39

Isoelectric Point (pI)

37.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BOP1NT	PF08145	29 - 70	4.2e-08	BOP1NT (NUC169) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005927)

Species	Orthologous Gene IDs
malus_domestica	MD09G1275000.v1.1
pyrus_communis	pycom09g18560
rosa_chinensis	RchiOBHm_Chr2g0091411 RchiOBHm_Chr4g0385481
rosa_laevigata	RLG00000015648 RLG00000022082
rosa_multiflora	Rmu_ssc0000272.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022250
rosa_rugosa	Rorug02G0229700 Rorug02G0546400 Rorug02G0546500 Rorug02G0546600
rosa_samantha	Rh1AG195500 Rh1CG179900 Rh2AG485800 Rh2AG667300 Rh2BG482500 Rh2BG678800 Rh2CG275400 Rh2CG471600 Rh2CG508300 Rh2DG491300 Rh4CG006700 Rh4CG006800 Rh5CG262600 Rh7DG361300
rosa_wichuraiana	Rw2G040510 Rw4G000400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	195
AcsI	RAATTY	1 cut(s)	192
AfiI	CCNNNNNNNGG	1 cut(s)	195
ApoI	RAATTY	1 cut(s)	192
BbsI	GAAGAC	1 cut(s)	156
BpiI	GAAGAC	1 cut(s)	156
BsaBI	GATNNNNATC	3 cut(s)	84, 160, 224
Bsc4I	CCNNNNNNNGG	1 cut(s)	195
Bse8I	GATNNNNATC	3 cut(s)	84, 160, 224
BseGI	GGATG	1 cut(s)	97
BseJI	GATNNNNATC	3 cut(s)	84, 160, 224
BseLI	CCNNNNNNNGG	1 cut(s)	195
BseRI	GAGGAG	1 cut(s)	24
BslI	CCNNNNNNNGG	1 cut(s)	195
Bsp143I	GATC	1 cut(s)	112
BssMI	GATC	1 cut(s)	112
Bst4CI	ACNGT	1 cut(s)	121
BstDEI	CTNAG	1 cut(s)	213
BstF5I	GGATG	1 cut(s)	97
BstKTI	GATC	1 cut(s)	115
BstMBI	GATC	1 cut(s)	112
BstV2I	GAAGAC	1 cut(s)	156
BtsCI	GGATG	1 cut(s)	97
BtsIMutI	CAGTG	1 cut(s)	126
DdeI	CTNAG	1 cut(s)	213
DpnI	GATC	1 cut(s)	114
DpnII	GATC	1 cut(s)	112
Eco32I	GATATC	1 cut(s)	222
EcoRV	GATATC	1 cut(s)	222
FaiI	YATR	1 cut(s)	111
FalI	AAGNNNNNCTT	1 cut(s)	30
FokI	GGATG	1 cut(s)	104
HinfI	GANTC	1 cut(s)	185
Hpy188I	TCNGA	1 cut(s)	19
Hpy188III	TCNNGA	1 cut(s)	89
HpyAV	CCTTC	1 cut(s)	133
HpyCH4III	ACNGT	1 cut(s)	121
HpyCH4IV	ACGT	1 cut(s)	100
HpyCH4V	TGCA	1 cut(s)	160
HpyF3I	CTNAG	1 cut(s)	213
HpySE526I	ACGT	1 cut(s)	100
Kzo9I	GATC	1 cut(s)	112
LmnI	GCTCC	1 cut(s)	37
MaeII	ACGT	1 cut(s)	100
MalI	GATC	1 cut(s)	114
MboI	GATC	1 cut(s)	112
MboII	GAAGA	4 cut(s)	6, 136, 139, 161
MfeI	CAATTG	2 cut(s)	60, 229
MluCI	AATT	3 cut(s)	60, 192, 229
MnlI	CCTC	2 cut(s)	19, 45
MseI	TTAA	1 cut(s)	132
MunI	CAATTG	2 cut(s)	60, 229
NdeII	GATC	1 cut(s)	112
PfeI	GAWTC	1 cut(s)	185
PflMI	CCANNNNNTGG	1 cut(s)	195
SaqAI	TTAA	1 cut(s)	132
Sau3AI	GATC	1 cut(s)	112
SetI	ASST	3 cut(s)	30, 52, 103
SgeI	CNNG	3 cut(s)	48, 101, 182
Sse9I	AATT	3 cut(s)	60, 192, 229
TaaI	ACNGT	1 cut(s)	121
TaiI	ACGT	1 cut(s)	103
TaqI	TCGA	1 cut(s)	37
TasI	AATT	3 cut(s)	60, 192, 229
TfiI	GAWTC	1 cut(s)	185
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TscAI	CASTG	1 cut(s)	126
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	126
Van91I	CCANNNNNTGG	1 cut(s)	195
XapI	RAATTY	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.