Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005927

Physical Location & Seq

Genomic Coordinates Forward (+)

27491986 .. 27495524

Gene Structure 3539 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00022250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGGTTCTGGATGAGAAGCATATTGGTTATGATCTTACAGGGAAGAAGATTAAAAAGAAGGAAAGTGGAGAAATTGCAATTTTTCTTGCTAGCGCTGATGATTCCAAAAATTGGTGGGTTTTACATAGGGCTTATGGTATAGAGGCTGATATCTGGAGCGTAAGTGTTATTGCATACATTCTGTTGTGTAGCAGCCATCCACTTTGGTCTCGAACTGAGTTTGGCATAGTATTAGGTAATGTGCATTCCCCGAGTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0004713 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018108 GO:0018193 GO:0018209 GO:0018212 GO:0019538 GO:0023051 GO:0023052 GO:0023056 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

86

Amino Acids

9.6

Weight (kDa)

6.39

Isoelectric Point (pI)

33.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BOP1NT	PF08145	4 - 41	1.9e-06	BOP1NT (NUC169) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005927)

Species	Orthologous Gene IDs
malus_domestica	MD09G1275000.v1.1
pyrus_communis	pycom09g18560
rosa_chinensis	RchiOBHm_Chr2g0091411 RchiOBHm_Chr4g0385481
rosa_laevigata	RLG00000015648 RLG00000022082
rosa_multiflora	Rmu_ssc0000272.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022250
rosa_rugosa	Rorug02G0229700 Rorug02G0546400 Rorug02G0546500 Rorug02G0546600
rosa_samantha	Rh1AG195500 Rh1CG179900 Rh2AG485800 Rh2AG667300 Rh2BG482500 Rh2BG678800 Rh2CG275400 Rh2CG471600 Rh2CG508300 Rh2DG491300 Rh4CG006700 Rh4CG006800 Rh5CG262600 Rh7DG361300
rosa_wichuraiana	Rw2G040510 Rw4G000400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	111
AfeI	AGCGCT	1 cut(s)	94
AfiI	CCNNNNNNNGG	1 cut(s)	111
Alw26I	GTCTC	1 cut(s)	213
Ama87I	CYCGRG	1 cut(s)	250
Aor51HI	AGCGCT	1 cut(s)	94
ApeKI	GCWGC	1 cut(s)	192
AspLEI	GCGC	1 cut(s)	95
AsuNHI	GCTAGC	1 cut(s)	89
AvaI	CYCGRG	1 cut(s)	250
BbvI	GCAGC	1 cut(s)	204
BccI	CCATC	1 cut(s)	204
BcoDI	GTCTC	1 cut(s)	213
BfaI	CTAG	1 cut(s)	90
BfoI	RGCGCY	1 cut(s)	96
BisI	GCNGC	1 cut(s)	193
BlsI	GCNGC	1 cut(s)	194
BmeT110I	CYCGRG	1 cut(s)	250
BmtI	GCTAGC	1 cut(s)	93
BpmI	CTGGAG	1 cut(s)	175
BsaI	GGTCTC	1 cut(s)	213
BsaXI	ACNNNNNCTCC	2 cut(s)	148, 178
Bsc4I	CCNNNNNNNGG	1 cut(s)	111
BseGI	GGATG	2 cut(s)	16, 196
BseLI	CCNNNNNNNGG	1 cut(s)	111
BseMII	CTCAG	1 cut(s)	207
BseXI	GCAGC	1 cut(s)	204
BsiHKCI	CYCGRG	1 cut(s)	250
BslI	CCNNNNNNNGG	1 cut(s)	111
BsmAI	GTCTC	1 cut(s)	213
BsmI	GAATGC	1 cut(s)	244
Bso31I	GGTCTC	1 cut(s)	213
BsoBI	CYCGRG	1 cut(s)	250
Bsp143I	GATC	1 cut(s)	31
BspCNI	CTCAG	1 cut(s)	208
BspOI	GCTAGC	1 cut(s)	93
BspTNI	GGTCTC	1 cut(s)	213
BssMI	GATC	1 cut(s)	31
BstC8I	GCNNGC	1 cut(s)	91
BstDEI	CTNAG	1 cut(s)	216
BstF5I	GGATG	2 cut(s)	16, 196
BstH2I	RGCGCY	1 cut(s)	96
BstHHI	GCGC	1 cut(s)	95
BstKTI	GATC	1 cut(s)	34
BstMAI	GTCTC	1 cut(s)	213
BstMBI	GATC	1 cut(s)	31
BstV1I	GCAGC	1 cut(s)	204
BtsCI	GGATG	2 cut(s)	16, 196
Cac8I	GCNNGC	1 cut(s)	91
CfoI	GCGC	1 cut(s)	95
CviJI	RGCY	3 cut(s)	131, 146, 195
CviKI_1	RGCY	3 cut(s)	131, 146, 195
DdeI	CTNAG	1 cut(s)	216
DpnI	GATC	1 cut(s)	33
DpnII	GATC	1 cut(s)	31
Eco31I	GGTCTC	1 cut(s)	213
Eco32I	GATATC	1 cut(s)	151
Eco47III	AGCGCT	1 cut(s)	94
Eco88I	CYCGRG	1 cut(s)	250
EcoRV	GATATC	1 cut(s)	151
FaiI	YATR	7 cut(s)	21, 30, 126, 135, 140, 175, 227
Fnu4HI	GCNGC	1 cut(s)	193
FokI	GGATG	2 cut(s)	23, 183
Fsp4HI	GCNGC	1 cut(s)	193
FspBI	CTAG	1 cut(s)	90
GlaI	GCGC	1 cut(s)	94
GluI	GCNGC	1 cut(s)	193
GsuI	CTGGAG	1 cut(s)	175
HaeII	RGCGCY	1 cut(s)	96
HhaI	GCGC	1 cut(s)	95
Hin6I	GCGC	1 cut(s)	93
HinP1I	GCGC	1 cut(s)	93
HinfI	GANTC	1 cut(s)	101
Hpy188III	TCNNGA	3 cut(s)	8, 154, 210
HpyAV	CCTTC	1 cut(s)	52
HpyCH4V	TGCA	3 cut(s)	77, 173, 244
HpyF3I	CTNAG	1 cut(s)	216
HspAI	GCGC	1 cut(s)	93
Kzo9I	GATC	1 cut(s)	31
LmnI	GCTCC	1 cut(s)	156
LpnPI	CCDG	2 cut(s)	24, 139
Lsp1109I	GCAGC	1 cut(s)	204
MaeI	CTAG	1 cut(s)	90
MalI	GATC	1 cut(s)	33
MboI	GATC	1 cut(s)	31
MboII	GAAGA	2 cut(s)	55, 58
MluCI	AATT	3 cut(s)	72, 78, 109
MnlI	CCTC	1 cut(s)	136
MseI	TTAA	1 cut(s)	51
Mva1269I	GAATGC	1 cut(s)	244
NdeII	GATC	1 cut(s)	31
NheI	GCTAGC	1 cut(s)	89
PctI	GAATGC	1 cut(s)	244
PfeI	GAWTC	1 cut(s)	101
PflMI	CCANNNNNTGG	1 cut(s)	111
PkrI	GCNGC	1 cut(s)	194
SaqAI	TTAA	1 cut(s)	51
SatI	GCNGC	1 cut(s)	193
Sau3AI	GATC	1 cut(s)	31
SetI	ASST	1 cut(s)	238
SgeI	CNNG	6 cut(s)	20, 51, 98, 102, 166, 222
Sse9I	AATT	3 cut(s)	72, 78, 109
SspMI	CTAG	1 cut(s)	90
TaqI	TCGA	1 cut(s)	211
TasI	AATT	3 cut(s)	72, 78, 109
TfiI	GAWTC	1 cut(s)	101
Tru1I	TTAA	1 cut(s)	51
Tru9I	TTAA	1 cut(s)	51
TseI	GCWGC	1 cut(s)	192
Van91I	CCANNNNNTGG	1 cut(s)	111
XspI	CTAG	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.