Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0003926

Physical Location & Seq

Genomic Coordinates Reverse (-)

15780891 .. 15783273

Gene Structure 2383 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGCACTGGCTCTAAACAGCATAATCCCCCACACCACAGCTTTACGCCTTAGCACTTCTCTGCCCTCTTCCAGAAAGCCCTCGAGCCCTCAATTCCAACTGCCTCACAACCGCCGCCAGAGAGGTCAGATTGTCCAGAGCTCTGCCTCTTCCTCCGCCAACACCACTGTGTCAGATGTTAAGCTGCGGCTCCAGGAGGAGGACCCCAGCAATGGCTTCAATCCCATTTCCACTTTTGCTTCTGCGTGGTCCGAATTTGCCAGTAATGTGTCCGGTGAATGGGATGGCTATGGAGCAGACTTCACAAGGGAAGGGTGCCCAATAGAACTTCCCGAGAATGTTGTACCTGCAGCTTACAGGGAGTGGGAGGTTAAGGTTTTCGATTGGCAAACTCAATGCCCCACTCTTGCTAACCCAGATGAGCACATTCTTTTATACAAGAATATAGAGCTACTTCCTACTGTTGGATGTGAAGCTGATGCTGCCACTCGATATAGAATCATTGAGAAGAATATTGGTGGTCAGAGTAACGAAGTTTCTGCCTTTGCATATCAGTCTAGTGGATGTTATGTGTCTGTCTTGCCAATTCAGGATAAGGGTACGTATAAGTTACTGGAGTTAGAGTATTGCTTGATCGATCCTCAATATAAAGAGTCTCGGGTGAGAATAATTCAGGTCATCCGCATAGAGAATAAGAAGATGCTGCTGGAGAATATTAGAGTTTACTGTGAGAATTGGTATGGGCCATTCAGAGATGGGGATCAGTTAGGTGGATGTGCTATCCGTGATTCTGCCTTTGCTTCTACGGCTGCATTGGAAGCTTCAGAAGTTATTGGAACTTGGCGAGGTCCCAGTGCTGTTGCCAGTTTCAGTGGTACTCAAATTAATGTTCTTCAAGAACTTTTAGACAACAGCGAGCAGAGCTCCGTAAGAGATGAAAGTGGTCTCGTATTGCTTCCCAAGCAGCTGTGGTGTTCAGTGAAAGAAACTAAAGATGGTGATACATACAGCGAGGTAGGATGGCTGTTAGATCATGGACATGCCATCACATCAAAATGCACCTTCTCAAGCACAGCAACGCCAAAGGAAATCTCGGTAGCAAATGAAACTGCAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

373

Amino Acids

41.09

Weight (kDa)

4.98

Isoelectric Point (pI)

48.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38225 AT4G38225 AT4G38225
fragaria_vesca	FvH4_2g16900 FvH4_2g16900 FvH4_2g16900 FvH4_2g16900 FvH4_2g16900
malus_domestica	MD05G1140400.v1.1 MD05G1140800.v1.1 MD10G1142400.v1.1
prunus_persica	Prupe.8G180900_v2.0.a1 Prupe.8G180900_v2.0.a1 Prupe.8G180900_v2.0.a1 Prupe.8G180900_v2.0.a1
pyrus_communis	pycom05g13590 pycom10g12210
rosa_chinensis	RchiOBHm_Chr6g0281021
rosa_laevigata	RLG00000009220 RLG00000013005
rosa_multiflora	Rmu_sc0000870.1_g000027 Rmu_sc0001021.1_g000001 Rmu_sc0002082.1_g000049 Rmu_sc0012869.1_g000003
rosa_roxburghii	Rroxscaffold_7G00187380
rosa_rugosa	Rorug06G0138200
rosa_samantha	Rh4AG124500 Rh4BG143500 Rh6AG250200 Rh6BG252500 Rh6BG318400 Rh6CG252900 Rh6DG244600
rosa_wichuraiana	Rw6G021640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	355
AccB1I	GGYRCC	1 cut(s)	315
AciI	CCGC	5 cut(s)	112, 115, 156, 187, 682
AclWI	GGATC	2 cut(s)	632, 768
AcsI	RAATTY	1 cut(s)	254
AcuI	CTGAAG	1 cut(s)	807
AfaI	GTAC	3 cut(s)	345, 601, 877
AfiI	CCNNNNNNNGG	4 cut(s)	199, 212, 279, 464
AgsI	TTSAA	2 cut(s)	220, 896
AjnI	CCWGG	1 cut(s)	192
AleI	CACNNNNGTG	1 cut(s)	167
AluBI	AGCT	9 cut(s)	41, 141, 184, 353, 451, 476, 821, 924, 967
AluI	AGCT	9 cut(s)	41, 141, 184, 353, 451, 476, 821, 924, 967
Alw21I	GWGCWC	3 cut(s)	143, 426, 926
Alw26I	GTCTC	2 cut(s)	660, 950
AlwI	GGATC	2 cut(s)	632, 768
Ama87I	CYCGRG	3 cut(s)	82, 332, 657
AoxI	GGCC	1 cut(s)	743
ApeKI	GCWGC	6 cut(s)	184, 350, 482, 703, 809, 964
ApoI	RAATTY	1 cut(s)	254
AseI	ATTAAT	1 cut(s)	885
AspS9I	GGNCC	4 cut(s)	202, 249, 743, 848
AsuHPI	GGTGA	3 cut(s)	287, 673, 1010
AvaI	CYCGRG	3 cut(s)	82, 332, 657
AvaII	GGWCC	3 cut(s)	202, 249, 848
BaeGI	GKGCMC	1 cut(s)	320
BanI	GGYRCC	1 cut(s)	315
BanII	GRGCYC	3 cut(s)	89, 143, 926
Bbv12I	GWGCWC	3 cut(s)	143, 426, 926
BbvI	GCAGC	6 cut(s)	171, 362, 469, 690, 796, 976
BccI	CCATC	5 cut(s)	278, 749, 989, 1014, 1052
BceAI	ACGGC	1 cut(s)	822
BcgI	CGANNNNNNTGC	2 cut(s)	521, 555
BciT130I	CCWGG	1 cut(s)	194
BcoDI	GTCTC	2 cut(s)	660, 950
BfaI	CTAG	1 cut(s)	558
BfmI	CTRYAG	2 cut(s)	348, 1110
BfuAI	ACCTGC	1 cut(s)	355
BisI	GCNGC	8 cut(s)	115, 185, 188, 351, 483, 704, 810, 965
BlsI	GCNGC	8 cut(s)	116, 186, 189, 352, 484, 705, 811, 966
Bme1390I	CCNGG	1 cut(s)	194
Bme18I	GGWCC	3 cut(s)	202, 249, 848
BmeT110I	CYCGRG	3 cut(s)	82, 332, 657
BmgT120I	GGNCC	4 cut(s)	202, 249, 743, 848
BmiI	GGNNCC	4 cut(s)	191, 204, 317, 850
BmrFI	CCNGG	1 cut(s)	194
BmrI	ACTGGG	1 cut(s)	846
BmsI	GCATC	2 cut(s)	469, 690
BmuI	ACTGGG	1 cut(s)	846
BplI	GAGNNNNNCTC	2 cut(s)	908, 940
BpmI	CTGGAG	3 cut(s)	176, 635, 728
Bpu10I	CCTNAGC	1 cut(s)	50
BpuEI	CTTGAG	1 cut(s)	1051
Bsa29I	ATCGAT	1 cut(s)	636
BsaAI	YACGTR	1 cut(s)	603
BsaBI	GATNNNNATC	1 cut(s)	759
BsaI	GGTCTC	1 cut(s)	950
BsaWI	WCCGGW	1 cut(s)	272
BsaXI	ACNNNNNCTCC	2 cut(s)	608, 638
Bsc4I	CCNNNNNNNGG	4 cut(s)	199, 212, 279, 464
Bse1I	ACTGG	5 cut(s)	12, 261, 618, 852, 864
Bse3DI	GCAATG	1 cut(s)	217
Bse8I	GATNNNNATC	1 cut(s)	759
BseBI	CCWGG	1 cut(s)	194
BseCI	ATCGAT	1 cut(s)	636
BseGI	GGATG	6 cut(s)	289, 473, 569, 678, 779, 1025
BseJI	GATNNNNATC	1 cut(s)	759
BseLI	CCNNNNNNNGG	4 cut(s)	199, 212, 279, 464
BseMI	GCAATG	1 cut(s)	217
BseNI	ACTGG	5 cut(s)	12, 261, 618, 852, 864
BseRI	GAGGAG	1 cut(s)	212
BseSI	GKGCMC	1 cut(s)	320
BseXI	GCAGC	6 cut(s)	171, 362, 469, 690, 796, 976
BseYI	CCCAGC	1 cut(s)	206
BshFI	GGCC	1 cut(s)	745
BshNI	GGYRCC	1 cut(s)	315
BshVI	ATCGAT	1 cut(s)	636
BsiHKAI	GWGCWC	3 cut(s)	143, 426, 926
BsiHKCI	CYCGRG	3 cut(s)	82, 332, 657
BsiSI	CCGG	1 cut(s)	273
BslFI	GGGAC	1 cut(s)	834
BslI	CCNNNNNNNGG	4 cut(s)	199, 212, 279, 464
BsmAI	GTCTC	2 cut(s)	660, 950
BsmFI	GGGAC	1 cut(s)	834
BsnI	GGCC	1 cut(s)	745
Bso31I	GGTCTC	1 cut(s)	950
BsoBI	CYCGRG	3 cut(s)	82, 332, 657
Bsp1286I	GDGCHC	5 cut(s)	89, 143, 320, 426, 926
Bsp143I	GATC	4 cut(s)	633, 637, 760, 1030
BspACI	CCGC	5 cut(s)	112, 115, 156, 187, 682
BspANI	GGCC	1 cut(s)	745
BspDI	ATCGAT	1 cut(s)	636
BspLI	GGNNCC	4 cut(s)	191, 204, 317, 850
BspMAI	CTGCAG	2 cut(s)	352, 1114
BspMI	ACCTGC	1 cut(s)	355
BspPI	GGATC	2 cut(s)	632, 768
BspT107I	GGYRCC	1 cut(s)	315
BspTNI	GGTCTC	1 cut(s)	950
BsrDI	GCAATG	1 cut(s)	217
BsrI	ACTGG	5 cut(s)	12, 261, 618, 852, 864
BssMI	GATC	4 cut(s)	633, 637, 760, 1030
Bst2UI	CCWGG	1 cut(s)	194
Bst4CI	ACNGT	3 cut(s)	169, 463, 728
Bst6I	CTCTTC	2 cut(s)	73, 154
BstBAI	YACGTR	1 cut(s)	603
BstC8I	GCNNGC	1 cut(s)	917
BstDEI	CTNAG	1 cut(s)	50
BstF5I	GGATG	6 cut(s)	289, 473, 569, 678, 779, 1025
BstKTI	GATC	4 cut(s)	636, 640, 763, 1033
BstMAI	GTCTC	2 cut(s)	660, 950
BstMBI	GATC	4 cut(s)	633, 637, 760, 1030
BstMWI	GCNNNNNNNGC	5 cut(s)	482, 806, 818, 921, 961
BstNI	CCWGG	1 cut(s)	194
BstNSI	RCATGY	1 cut(s)	1043
BstSCI	CCNGG	1 cut(s)	192
BstSFI	CTRYAG	2 cut(s)	348, 1110
BstSLI	GKGCMC	1 cut(s)	320
BstSNI	TACGTA	1 cut(s)	603
BstV1I	GCAGC	6 cut(s)	171, 362, 469, 690, 796, 976
Bsu15I	ATCGAT	1 cut(s)	636
BsuRI	GGCC	1 cut(s)	745
BsuTUI	ATCGAT	1 cut(s)	636
BtsCI	GGATG	6 cut(s)	289, 473, 569, 678, 779, 1025
BtsIMutI	CAGTG	5 cut(s)	5, 165, 859, 877, 984
BveI	ACCTGC	1 cut(s)	355
Cac8I	GCNNGC	1 cut(s)	917
Cfr13I	GGNCC	4 cut(s)	202, 249, 743, 848
ClaI	ATCGAT	1 cut(s)	636
Csp6I	GTAC	3 cut(s)	344, 600, 876
CviAII	CATG	2 cut(s)	1034, 1040
CviQI	GTAC	3 cut(s)	344, 600, 876
DdeI	CTNAG	1 cut(s)	50
DpnI	GATC	4 cut(s)	635, 639, 762, 1032
DpnII	GATC	4 cut(s)	633, 637, 760, 1030
Eam1104I	CTCTTC	2 cut(s)	73, 154
EarI	CTCTTC	2 cut(s)	73, 154
EciI	GGCGGA	1 cut(s)	145
Ecl136II	GAGCTC	2 cut(s)	141, 924
Eco105I	TACGTA	1 cut(s)	603
Eco24I	GRGCYC	3 cut(s)	89, 143, 926
Eco31I	GGTCTC	1 cut(s)	950
Eco47I	GGWCC	3 cut(s)	202, 249, 848
Eco53kI	GAGCTC	2 cut(s)	141, 924
Eco57I	CTGAAG	1 cut(s)	807
Eco88I	CYCGRG	3 cut(s)	82, 332, 657
EcoICRI	GAGCTC	2 cut(s)	141, 924
EcoO109I	RGGNCCY	2 cut(s)	202, 848
EcoRII	CCWGG	1 cut(s)	192
EcoT38I	GRGCYC	3 cut(s)	89, 143, 926
FaeI	CATG	2 cut(s)	1037, 1043
FaqI	GGGAC	1 cut(s)	834
FatI	CATG	2 cut(s)	1033, 1039
Fnu4HI	GCNGC	8 cut(s)	115, 185, 188, 351, 483, 704, 810, 965
FokI	GGATG	6 cut(s)	296, 480, 576, 665, 786, 1032
FriOI	GRGCYC	3 cut(s)	89, 143, 926
Fsp4HI	GCNGC	8 cut(s)	115, 185, 188, 351, 483, 704, 810, 965
FspBI	CTAG	1 cut(s)	558
GluI	GCNGC	8 cut(s)	115, 185, 188, 351, 483, 704, 810, 965
GsaI	CCCAGC	1 cut(s)	210
GsuI	CTGGAG	3 cut(s)	176, 635, 728
HaeIII	GGCC	1 cut(s)	745
HapII	CCGG	1 cut(s)	273
Hin1II	CATG	2 cut(s)	1037, 1043
HindIII	AAGCTT	1 cut(s)	819
HinfI	GANTC	3 cut(s)	498, 653, 788
HpaII	CCGG	1 cut(s)	273
HphI	GGTGA	3 cut(s)	287, 673, 1010
Hpy166II	GTNNAC	1 cut(s)	724
Hpy188I	TCNGA	6 cut(s)	129, 175, 253, 525, 752, 826
Hpy188III	TCNNGA	5 cut(s)	72, 136, 332, 590, 896
Hpy8I	GTNNAC	1 cut(s)	724
HpyAV	CCTTC	2 cut(s)	305, 1072
HpyCH4III	ACNGT	3 cut(s)	169, 463, 728
HpyCH4IV	ACGT	1 cut(s)	602
HpyCH4V	TGCA	5 cut(s)	350, 548, 812, 1059, 1112
HpyF10VI	GCNNNNNNNGC	5 cut(s)	482, 806, 818, 921, 961
HpyF3I	CTNAG	1 cut(s)	50
HpySE526I	ACGT	1 cut(s)	602
Hsp92II	CATG	2 cut(s)	1037, 1043
Kzo9I	GATC	4 cut(s)	633, 637, 760, 1030
LmnI	GCTCC	3 cut(s)	195, 293, 929
Lsp1109I	GCAGC	6 cut(s)	171, 362, 469, 690, 796, 976
LweI	GCATC	2 cut(s)	469, 690
MaeI	CTAG	1 cut(s)	558
MaeII	ACGT	1 cut(s)	602
MaeIII	GTNAC	2 cut(s)	527, 609
MalI	GATC	4 cut(s)	635, 639, 762, 1032
MboI	GATC	4 cut(s)	633, 637, 760, 1030
MboII	GAAGA	5 cut(s)	60, 141, 520, 709, 884
MhlI	GDGCHC	5 cut(s)	89, 143, 320, 426, 926
MluCI	AATT	6 cut(s)	92, 254, 585, 669, 733, 882
MlyI	GAGTC	1 cut(s)	662
MmeI	TCCRAC	2 cut(s)	121, 445
MseI	TTAA	3 cut(s)	180, 372, 885
MslI	CAYNNNNRTG	3 cut(s)	167, 1038, 1054
MspA1I	CMGCKG	1 cut(s)	967
MspI	CCGG	1 cut(s)	273
MspR9I	CCNGG	1 cut(s)	194
MvaI	CCWGG	1 cut(s)	194
MwoI	GCNNNNNNNGC	5 cut(s)	482, 806, 818, 921, 961
NdeII	GATC	4 cut(s)	633, 637, 760, 1030
NlaIII	CATG	2 cut(s)	1037, 1043
NlaIV	GGNNCC	4 cut(s)	191, 204, 317, 850
NspI	RCATGY	1 cut(s)	1043
OliI	CACNNNNGTG	1 cut(s)	167
PaeR7I	CTCGAG	1 cut(s)	82
PfeI	GAWTC	2 cut(s)	498, 788
PfoI	TCCNGGA	1 cut(s)	192
PkrI	GCNGC	8 cut(s)	116, 186, 189, 352, 484, 705, 811, 966
PleI	GAGTC	1 cut(s)	661
PpsI	GAGTC	1 cut(s)	661
Ppu21I	YACGTR	1 cut(s)	603
PpuMI	RGGWCCY	2 cut(s)	202, 848
PshBI	ATTAAT	1 cut(s)	885
Psp124BI	GAGCTC	2 cut(s)	143, 926
Psp5II	RGGWCCY	2 cut(s)	202, 848
Psp6I	CCWGG	1 cut(s)	192
PspFI	CCCAGC	1 cut(s)	206
PspGI	CCWGG	1 cut(s)	192
PspN4I	GGNNCC	4 cut(s)	191, 204, 317, 850
PspPI	GGNCC	4 cut(s)	202, 249, 743, 848
PspPPI	RGGWCCY	2 cut(s)	202, 848
PspXI	VCTCGAGB	1 cut(s)	82
PstI	CTGCAG	2 cut(s)	352, 1114
PvuII	CAGCTG	1 cut(s)	967
RsaI	GTAC	3 cut(s)	345, 601, 877
RsaNI	GTAC	3 cut(s)	344, 600, 876
RseI	CAYNNNNRTG	3 cut(s)	167, 1038, 1054
SacI	GAGCTC	2 cut(s)	143, 926
SaqAI	TTAA	3 cut(s)	180, 372, 885
SatI	GCNGC	8 cut(s)	115, 185, 188, 351, 483, 704, 810, 965
Sau3AI	GATC	4 cut(s)	633, 637, 760, 1030
Sau96I	GGNCC	4 cut(s)	202, 249, 743, 848
SchI	GAGTC	1 cut(s)	662
ScrFI	CCNGG	1 cut(s)	194
SduI	GDGCHC	5 cut(s)	89, 143, 320, 426, 926
SfaNI	GCATC	2 cut(s)	469, 690
SfcI	CTRYAG	2 cut(s)	348, 1110
Sfr274I	CTCGAG	1 cut(s)	82
SinI	GGWCC	3 cut(s)	202, 249, 848
SlaI	CTCGAG	1 cut(s)	82
SmiMI	CAYNNNNRTG	3 cut(s)	167, 1038, 1054
SmlI	CTYRAG	2 cut(s)	82, 1066
SmoI	CTYRAG	2 cut(s)	82, 1066
SnaBI	TACGTA	1 cut(s)	603
Sse9I	AATT	6 cut(s)	92, 254, 585, 669, 733, 882
SsiI	CCGC	5 cut(s)	112, 115, 156, 187, 682
SspI	AATATT	2 cut(s)	514, 715
SspMI	CTAG	1 cut(s)	558
SstI	GAGCTC	2 cut(s)	143, 926
StyD4I	CCNGG	1 cut(s)	192
TaaI	ACNGT	3 cut(s)	169, 463, 728
TaiI	ACGT	1 cut(s)	605
TaqI	TCGA	4 cut(s)	83, 381, 490, 636
TasI	AATT	6 cut(s)	92, 254, 585, 669, 733, 882
TauI	GCSGC	2 cut(s)	117, 190
TfiI	GAWTC	2 cut(s)	498, 788
Tru1I	TTAA	3 cut(s)	180, 372, 885
Tru9I	TTAA	3 cut(s)	180, 372, 885
TscAI	CASTG	5 cut(s)	12, 172, 859, 877, 984
TseI	GCWGC	6 cut(s)	184, 350, 482, 703, 809, 964
TspDTI	ATGAA	2 cut(s)	951, 1119
TspGWI	ACGGA	2 cut(s)	773, 916
TspRI	CASTG	5 cut(s)	12, 172, 859, 877, 984
VpaK11BI	GGWCC	3 cut(s)	202, 249, 848
VspI	ATTAAT	1 cut(s)	885
XapI	RAATTY	1 cut(s)	254
XceI	RCATGY	1 cut(s)	1043
XhoI	CTCGAG	1 cut(s)	82
XspI	CTAG	1 cut(s)	558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.