Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0004070

Physical Location & Seq

Genomic Coordinates Reverse (-)

21685686 .. 21686961

Gene Structure 1276 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGAAGTTGTGCAGTTCTACATTGTCTATTGTTCTTGTTTTGTTGGAGCTGTTCATGATCAATGTTGTATCATCGACTAAGTTACCTATAACGGCAGCTCTCAAAGTAAAAAAGCCTCGGGCCAAATATGTTCGCGCTGAGGATCTTCTGTCATTCGATCACTATGTTAAAACATGTCCACAAGCTGAGGGAATCATTCAACAAAAAGTTGGAGATTGGATTCAAAAGGATTTCACTTTGGCTGCTAGCATCATTCGCTTACACTTCCATGACTGTATTGTGAGAGGATGCGAAGCATCAATTCTCCTTAACCATCAAGCGAGCGAGAGGAGGGCTTTTGCCAGCAGGACACTAAGAGGTTTTGAAGTAATTGATGACATCAAAGCGGAGCTTGAGAGGCAGTGTCCTAAAACCGTCTCATGTGCTGACATTCTCACTGCCGCAACCAGAGATGCCACAATCATAGCTGGTGGTCCATTTTGGGAAGTCCCCTTCGGACGCAAAGATGGTAAAATTTCAATCCTCAAGGAAGCTGACATTGTTCCTCAGGGACAGGAGAACATCACTCAATTGATTAATTTTTTCCAATCACGCGGCTTGAACATGCTTGATTTGGTCACACTCTCCGGGGCACACACCATGGGCAGAAGTTCTTGCTACGCCTTCAAGCACAGGCTCTCAAATTTCAATGGAACGAGAAAGCCTGACCCTTCACTTAACTCTATGTACTTGAATAACTTCTTGAAGAAGAAATGCAAAAATGACTTGGACTTGGTTTATCTCGACGCCATAACTCCAAAGACATTCGATCCAATGTACTACTCGAATCTCAACAAGAAGTTGGGATTGTTGTCAACTGATCAGCTGCTCAAGTCGGACAAGAGAACCGGTCCTTTTGTTGCTGCATTGGCGTCTCAGCCGTCACTTTTCGAAAGCCAGTTTTCTGTGTCAATGGTGAAGCTTGGAAATGTGCAAGTTCTCACAAGACCTAATGAAGGTGAAATCCGAGTGAACTGCAATTTTGTCAATGCTAAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

347

Amino Acids

38.67

Weight (kDa)

9.31

Isoelectric Point (pI)

28.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	67 - 305	3e-75	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30870
fragaria_vesca	FvH4_3g13260 FvH4_3g13260 FvH4_3g13910
malus_domestica	MD05G1243700.v1.1 MD10G1218200.v1.1 MD10G1225600.v1.1
prunus_persica	Prupe.4G120000_v2.0.a1 Prupe.4G125900_v2.0.a1
pyrus_communis	pycom05g21620 pycom10g18400 pycom10g18940
rosa_chinensis	RchiOBHm_Chr5g0021731 RchiOBHm_Chr5g0023121
rosa_laevigata	RLG00000032623 RLG00000032700
rosa_multiflora	Rmu_sc0007300.1_g000022 Rmu_ssc0000233.1_g000009
rosa_roxburghii	Rroxscaffold_1G00056230
rosa_rugosa	Rorug05G0068800 Rorug05G0077300
rosa_samantha	Rh5AG157300 Rh5AG163400 Rh5BG157000 Rh5BG162700 Rh5CG171100 Rh5CG177600 Rh5DG157200 Rh5DG164000
rosa_wichuraiana	Rw5G013990 Rw5G014020 Rw5G014740 Rw5G015010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	135, 594
AciI	CCGC	3 cut(s)	386, 441, 594
AclWI	GGATC	2 cut(s)	150, 803
AcsI	RAATTY	2 cut(s)	513, 682
AcyI	GRCGYC	2 cut(s)	786, 911
AfaI	GTAC	2 cut(s)	728, 818
AfiI	CCNNNNNNNGG	1 cut(s)	995
AflIII	ACRYGT	1 cut(s)	173
AgeI	ACCGGT	1 cut(s)	887
AgsI	TTSAA	9 cut(s)	200, 224, 365, 519, 601, 667, 688, 733, 745
AluBI	AGCT	8 cut(s)	49, 98, 185, 391, 467, 533, 865, 961
AluI	AGCT	8 cut(s)	49, 98, 185, 391, 467, 533, 865, 961
Alw26I	GTCTC	2 cut(s)	421, 918
AlwI	GGATC	2 cut(s)	150, 803
Ama87I	CYCGRG	1 cut(s)	117
AoxI	GGCC	1 cut(s)	120
ApeKI	GCWGC	4 cut(s)	95, 242, 865, 902
ApoI	RAATTY	2 cut(s)	513, 682
AseI	ATTAAT	1 cut(s)	576
AsiGI	ACCGGT	1 cut(s)	887
Asp700I	GAANNNNTTC	1 cut(s)	737
AspLEI	GCGC	1 cut(s)	137
AspS9I	GGNCC	3 cut(s)	120, 473, 890
AsuC2I	CCSGG	1 cut(s)	628
AsuHPI	GGTGA	2 cut(s)	967, 1010
AsuII	TTCGAA	1 cut(s)	930
AsuNHI	GCTAGC	1 cut(s)	245
AvaI	CYCGRG	1 cut(s)	117
AvaII	GGWCC	2 cut(s)	473, 890
AxyI	CCTNAGG	1 cut(s)	546
BaeGI	GKGCMC	1 cut(s)	634
BbvCI	CCTCAGC	2 cut(s)	138, 186
BbvI	GCAGC	4 cut(s)	107, 229, 852, 889
BccI	CCATC	2 cut(s)	321, 500
BceAI	ACGGC	2 cut(s)	108, 904
BcgI	CGANNNNNNTGC	2 cut(s)	996, 1030
BclI	TGATCA	2 cut(s)	57, 859
BcnI	CCSGG	1 cut(s)	628
BcoDI	GTCTC	2 cut(s)	421, 918
BfaI	CTAG	1 cut(s)	246
BisI	GCNGC	6 cut(s)	96, 243, 441, 595, 866, 903
BlsI	GCNGC	6 cut(s)	97, 244, 442, 596, 867, 904
Bme1390I	CCNGG	1 cut(s)	628
Bme18I	GGWCC	2 cut(s)	473, 890
BmeT110I	CYCGRG	1 cut(s)	117
BmgT120I	GGNCC	3 cut(s)	120, 473, 890
BmrFI	CCNGG	1 cut(s)	628
BmsI	GCATC	4 cut(s)	258, 278, 305, 442
BmtI	GCTAGC	1 cut(s)	249
Bpu10I	CCTNAGC	2 cut(s)	138, 186
Bpu14I	TTCGAA	1 cut(s)	930
BpuEI	CTTGAG	3 cut(s)	413, 509, 854
BpuMI	CCSGG	1 cut(s)	628
BsaHI	GRCGYC	2 cut(s)	786, 911
BsaJI	CCNNGG	3 cut(s)	116, 627, 639
BsaWI	WCCGGW	1 cut(s)	887
Bsc4I	CCNNNNNNNGG	1 cut(s)	995
Bse118I	RCCGGY	1 cut(s)	887
Bse1I	ACTGG	1 cut(s)	937
Bse21I	CCTNAGG	1 cut(s)	546
BseDI	CCNNGG	3 cut(s)	116, 627, 639
BseGI	GGATG	1 cut(s)	293
BseLI	CCNNNNNNNGG	1 cut(s)	995
BseMII	CTCAG	4 cut(s)	129, 177, 560, 929
BseNI	ACTGG	1 cut(s)	937
BseRI	GAGGAG	1 cut(s)	343
BseSI	GKGCMC	1 cut(s)	634
BseXI	GCAGC	4 cut(s)	107, 229, 852, 889
BsgI	GTGCAG	1 cut(s)	31
Bsh1236I	CGCG	2 cut(s)	135, 594
BshFI	GGCC	1 cut(s)	122
BshTI	ACCGGT	1 cut(s)	887
BsiHKCI	CYCGRG	1 cut(s)	117
BsiSI	CCGG	2 cut(s)	627, 888
BslFI	GGGAC	2 cut(s)	473, 564
BslI	CCNNNNNNNGG	1 cut(s)	995
BsmAI	GTCTC	2 cut(s)	421, 918
BsmBI	CGTCTC	2 cut(s)	421, 918
BsmFI	GGGAC	2 cut(s)	473, 564
BsnI	GGCC	1 cut(s)	122
BsoBI	CYCGRG	1 cut(s)	117
Bsp119I	TTCGAA	1 cut(s)	930
Bsp1286I	GDGCHC	1 cut(s)	634
Bsp143I	GATC	5 cut(s)	57, 142, 157, 808, 859
Bsp19I	CCATGG	1 cut(s)	639
BspACI	CCGC	3 cut(s)	386, 441, 594
BspANI	GGCC	1 cut(s)	122
BspCNI	CTCAG	4 cut(s)	130, 178, 559, 928
BspFNI	CGCG	2 cut(s)	135, 594
BspHI	TCATGA	1 cut(s)	54
BspOI	GCTAGC	1 cut(s)	249
BspPI	GGATC	2 cut(s)	150, 803
BspT104I	TTCGAA	1 cut(s)	930
BsrFI	RCCGGY	1 cut(s)	887
BsrI	ACTGG	1 cut(s)	937
BssAI	RCCGGY	1 cut(s)	887
BssECI	CCNNGG	3 cut(s)	116, 627, 639
BssMI	GATC	5 cut(s)	57, 142, 157, 808, 859
BssNI	GRCGYC	2 cut(s)	786, 911
BssT1I	CCWWGG	1 cut(s)	639
Bst4CI	ACNGT	2 cut(s)	275, 415
BstACI	GRCGYC	2 cut(s)	786, 911
BstBI	TTCGAA	1 cut(s)	930
BstC8I	GCNNGC	3 cut(s)	247, 322, 343
BstDEI	CTNAG	6 cut(s)	78, 138, 186, 353, 546, 915
BstDSI	CCRYGG	1 cut(s)	639
BstENI	CCTNNNNNAGG	1 cut(s)	993
BstF5I	GGATG	1 cut(s)	293
BstFNI	CGCG	2 cut(s)	135, 594
BstHHI	GCGC	1 cut(s)	137
BstKTI	GATC	5 cut(s)	60, 145, 160, 811, 862
BstMAI	GTCTC	2 cut(s)	421, 918
BstMBI	GATC	5 cut(s)	57, 142, 157, 808, 859
BstMWI	GCNNNNNNNGC	3 cut(s)	255, 397, 908
BstNSI	RCATGY	2 cut(s)	177, 607
BstSCI	CCNGG	1 cut(s)	626
BstSLI	GKGCMC	1 cut(s)	634
BstUI	CGCG	2 cut(s)	135, 594
BstV1I	GCAGC	4 cut(s)	107, 229, 852, 889
BstX2I	RGATCY	1 cut(s)	142
BstYI	RGATCY	1 cut(s)	142
Bsu36I	CCTNAGG	1 cut(s)	546
BsuRI	GGCC	1 cut(s)	122
BtgI	CCRYGG	1 cut(s)	639
BtsCI	GGATG	1 cut(s)	293
BtsI	GCAGTG	2 cut(s)	407, 435
BtsIMutI	CAGTG	2 cut(s)	407, 435
Cac8I	GCNNGC	3 cut(s)	247, 322, 343
CciI	TCATGA	1 cut(s)	54
CfoI	GCGC	1 cut(s)	137
Cfr10I	RCCGGY	1 cut(s)	887
Cfr13I	GGNCC	3 cut(s)	120, 473, 890
CseI	GACGC	3 cut(s)	507, 794, 900
Csp6I	GTAC	2 cut(s)	727, 817
CspAI	ACCGGT	1 cut(s)	887
CviAII	CATG	6 cut(s)	55, 174, 269, 420, 604, 640
CviQI	GTAC	2 cut(s)	727, 817
DdeI	CTNAG	6 cut(s)	78, 138, 186, 353, 546, 915
DpnI	GATC	5 cut(s)	59, 144, 159, 810, 861
DpnII	GATC	5 cut(s)	57, 142, 157, 808, 859
Eco130I	CCWWGG	1 cut(s)	639
Eco47I	GGWCC	2 cut(s)	473, 890
Eco81I	CCTNAGG	1 cut(s)	546
Eco88I	CYCGRG	1 cut(s)	117
EcoNI	CCTNNNNNAGG	1 cut(s)	993
EcoT14I	CCWWGG	1 cut(s)	639
ErhI	CCWWGG	1 cut(s)	639
Esp3I	CGTCTC	2 cut(s)	421, 918
FaeI	CATG	6 cut(s)	58, 177, 272, 423, 607, 643
FalI	AAGNNNNNCTT	2 cut(s)	375, 407
FaqI	GGGAC	2 cut(s)	473, 564
FatI	CATG	6 cut(s)	54, 173, 268, 419, 603, 639
FbaI	TGATCA	2 cut(s)	57, 859
Fnu4HI	GCNGC	6 cut(s)	96, 243, 441, 595, 866, 903
FokI	GGATG	1 cut(s)	300
Fsp4HI	GCNGC	6 cut(s)	96, 243, 441, 595, 866, 903
FspBI	CTAG	1 cut(s)	246
GlaI	GCGC	1 cut(s)	136
GluI	GCNGC	6 cut(s)	96, 243, 441, 595, 866, 903
HaeIII	GGCC	1 cut(s)	122
HapII	CCGG	2 cut(s)	627, 888
HgaI	GACGC	3 cut(s)	507, 794, 900
HhaI	GCGC	1 cut(s)	137
Hin1I	GRCGYC	2 cut(s)	786, 911
Hin1II	CATG	6 cut(s)	58, 177, 272, 423, 607, 643
Hin6I	GCGC	1 cut(s)	135
HinP1I	GCGC	1 cut(s)	135
HincII	GTYRAC	1 cut(s)	855
HindII	GTYRAC	1 cut(s)	855
HindIII	AAGCTT	1 cut(s)	959
HinfI	GANTC	3 cut(s)	192, 220, 826
HpaII	CCGG	2 cut(s)	627, 888
HphI	GGTGA	2 cut(s)	967, 1010
Hpy166II	GTNNAC	3 cut(s)	179, 855, 1012
Hpy188I	TCNGA	3 cut(s)	497, 877, 1007
Hpy188III	TCNNGA	3 cut(s)	55, 742, 782
Hpy8I	GTNNAC	3 cut(s)	179, 855, 1012
Hpy99I	CGWCG	1 cut(s)	788
HpyAV	CCTTC	4 cut(s)	502, 673, 720, 989
HpyCH4III	ACNGT	2 cut(s)	275, 415
HpyCH4V	TGCA	5 cut(s)	12, 756, 905, 973, 1017
HpyF10VI	GCNNNNNNNGC	3 cut(s)	255, 397, 908
HpyF3I	CTNAG	6 cut(s)	78, 138, 186, 353, 546, 915
Hsp92I	GRCGYC	2 cut(s)	786, 911
Hsp92II	CATG	6 cut(s)	58, 177, 272, 423, 607, 643
HspAI	GCGC	1 cut(s)	135
Ksp22I	TGATCA	2 cut(s)	57, 859
Kzo9I	GATC	5 cut(s)	57, 142, 157, 808, 859
LmnI	GCTCC	2 cut(s)	46, 388
Lsp1109I	GCAGC	4 cut(s)	107, 229, 852, 889
LweI	GCATC	4 cut(s)	258, 278, 305, 442
MaeI	CTAG	1 cut(s)	246
MaeIII	GTNAC	3 cut(s)	81, 616, 921
MalI	GATC	5 cut(s)	59, 144, 159, 810, 861
MboI	GATC	5 cut(s)	57, 142, 157, 808, 859
MboII	GAAGA	3 cut(s)	137, 757, 760
MfeI	CAATTG	1 cut(s)	569
MflI	RGATCY	1 cut(s)	142
MhlI	GDGCHC	1 cut(s)	634
MluCI	AATT	7 cut(s)	300, 369, 513, 569, 577, 682, 1018
MmeI	TCCRAC	3 cut(s)	24, 190, 855
MroXI	GAANNNNTTC	1 cut(s)	737
MseI	TTAA	4 cut(s)	168, 309, 576, 717
MslI	CAYNNNNRTG	1 cut(s)	267
MspA1I	CMGCKG	1 cut(s)	865
MspI	CCGG	2 cut(s)	627, 888
MspR9I	CCNGG	1 cut(s)	628
MunI	CAATTG	1 cut(s)	569
MvnI	CGCG	2 cut(s)	135, 594
MwoI	GCNNNNNNNGC	3 cut(s)	255, 397, 908
NciI	CCSGG	1 cut(s)	628
NcoI	CCATGG	1 cut(s)	639
NdeII	GATC	5 cut(s)	57, 142, 157, 808, 859
NheI	GCTAGC	1 cut(s)	245
NlaIII	CATG	6 cut(s)	58, 177, 272, 423, 607, 643
NmuCI	GTSAC	2 cut(s)	616, 921
NspI	RCATGY	2 cut(s)	177, 607
NspV	TTCGAA	1 cut(s)	930
PagI	TCATGA	1 cut(s)	54
PciI	ACATGT	1 cut(s)	173
PdmI	GAANNNNTTC	1 cut(s)	737
PfeI	GAWTC	3 cut(s)	192, 220, 826
PinAI	ACCGGT	1 cut(s)	887
PkrI	GCNGC	6 cut(s)	97, 244, 442, 596, 867, 904
PscI	ACATGT	1 cut(s)	173
PshBI	ATTAAT	1 cut(s)	576
PspPI	GGNCC	3 cut(s)	120, 473, 890
PsuI	RGATCY	1 cut(s)	142
PvuII	CAGCTG	1 cut(s)	865
RsaI	GTAC	2 cut(s)	728, 818
RsaNI	GTAC	2 cut(s)	727, 817
RseI	CAYNNNNRTG	1 cut(s)	267
SaqAI	TTAA	4 cut(s)	168, 309, 576, 717
SatI	GCNGC	6 cut(s)	96, 243, 441, 595, 866, 903
Sau3AI	GATC	5 cut(s)	57, 142, 157, 808, 859
Sau96I	GGNCC	3 cut(s)	120, 473, 890
ScrFI	CCNGG	1 cut(s)	628
SduI	GDGCHC	1 cut(s)	634
SfaNI	GCATC	4 cut(s)	258, 278, 305, 442
SfuI	TTCGAA	1 cut(s)	930
SinI	GGWCC	2 cut(s)	473, 890
SmiMI	CAYNNNNRTG	1 cut(s)	267
SmlI	CTYRAG	3 cut(s)	392, 524, 869
SmoI	CTYRAG	3 cut(s)	392, 524, 869
Sse9I	AATT	7 cut(s)	300, 369, 513, 569, 577, 682, 1018
SsiI	CCGC	3 cut(s)	386, 441, 594
SspMI	CTAG	1 cut(s)	246
StyD4I	CCNGG	1 cut(s)	626
StyI	CCWWGG	1 cut(s)	639
TaaI	ACNGT	2 cut(s)	275, 415
TaqI	TCGA	6 cut(s)	74, 156, 783, 807, 824, 930
TasI	AATT	7 cut(s)	300, 369, 513, 569, 577, 682, 1018
TatI	WGTACW	2 cut(s)	726, 816
TauI	GCSGC	2 cut(s)	443, 597
TfiI	GAWTC	3 cut(s)	192, 220, 826
Tru1I	TTAA	4 cut(s)	168, 309, 576, 717
Tru9I	TTAA	4 cut(s)	168, 309, 576, 717
TscAI	CASTG	2 cut(s)	407, 442
TseFI	GTSAC	2 cut(s)	616, 921
TseI	GCWGC	4 cut(s)	95, 242, 865, 902
Tsp45I	GTSAC	2 cut(s)	616, 921
TspDTI	ATGAA	3 cut(s)	17, 43, 1008
TspRI	CASTG	2 cut(s)	407, 442
VpaK11BI	GGWCC	2 cut(s)	473, 890
VspI	ATTAAT	1 cut(s)	576
XagI	CCTNNNNNAGG	1 cut(s)	993
XapI	RAATTY	2 cut(s)	513, 682
XceI	RCATGY	2 cut(s)	177, 607
XmnI	GAANNNNTTC	1 cut(s)	737
XspI	CTAG	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.