Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0004532

Physical Location & Seq

Genomic Coordinates Reverse (-)

23591112 .. 23591927

Gene Structure 816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGCAAACCAAATCTTGCTGTTAACTATCTTCCTGGCCATGACATGTTCTCTGGTCATTGCTTTTGAGCCTAGTCCATTGCAGGATTTCTGTGTTGCTGATGCTACTAGCTCAGTAACGAGAGTTAATGGGTTACCTTGCTTGGACTCCAAGTTAGCAACAGCTGAGCATTTCTTCTTCAGCGGACTCCACATCCCAGGCAACACCTCAAACCCTGTTGGTGGAAAAGTCACCCCTGTCAATGTGGCTCAGATTCCAGGACTCAACACCCTCGGCATCTCACTCGCTCGCATTGACTACGCACCAATGGGTGTTATCCCTCCCCACACCCATCCTCGCGCCACCGAGATTCTGACGGTCTTGAAAGGCAAGCTCAATGTTGGGTTTGTGACCTCGAACCCCGAGAACAAGCTCATCTCCAAGGTCCTTAAGAAGGGTGATGTGTTTGTTTTCCCTGTTGGACTAGTTCACTATCAGCAAAACCTGGGTTCAGGAACTGCCATTTCTCTATCTTCCTTGAGCAGCCAAAACCCTAGAGTCAACACCATTGCCAATGTTGTTTTTGGGTCCAATCCTGTTATTTCCGAGGATGTTTTGGCCAAGTCTTTCCAAGTGGAACAATCCGTAATTAGGGATCGTTCAAGCAAAATTTTAGATGTTTTTCCATGTGGAATTAAATTGGCTTATGATATTTCATATCATTCCTCAATTTATACTTGTTATTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009987 GO:0010496 GO:0010497 GO:0030054 GO:0030312 GO:0044464 GO:0050789 GO:0050793 GO:0051179 GO:0051234 GO:0051239 GO:0055044 GO:0065007 GO:0071944 GO:2000026 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

243

Amino Acids

25.96

Weight (kDa)

8.26

Isoelectric Point (pI)

32.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	62 - 209	2e-49	Cupin
Cupin_2	PF07883	98 - 167	3.8e-09	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004532)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g10240 FvH4_3g10730
malus_domestica	MD05G1269200.v1.1 MD05G1271400.v1.1 MD05G1271500.v1.1 MD10G1248000.v1.1 MD10G1251900.v1.1 MD10G1252000.v1.1 MD14G1081700.v1.1
prunus_persica	Prupe.4G091500_v2.0.a1 Prupe.4G095500_v2.0.a1 Prupe.4G095600_v2.0.a1
pyrus_communis	pycom10g20550 pycom10g20790
rosa_chinensis	RchiOBHm_Chr5g0016481 RchiOBHm_Chr5g0017421
rosa_laevigata	RLG00000032286
rosa_multiflora	Rmu_co8334417.1_g000001 Rmu_sc0001235.1_g000024 Rmu_sc0007392.1_g000005 Rmu_sc0019163.1_g000002
rosa_roxburghii	Rroxscaffold_1G00059970
rosa_rugosa	Rorug05G0032500 Rorug05G0035300
rosa_samantha	Rh5AG126500 Rh5AG130000 Rh5BG125300 Rh5CG137900 Rh5DG125500 Rh5DG130300
rosa_wichuraiana	Rw5G010960 Rw5G011230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	339
AciI	CCGC	1 cut(s)	183
AclWI	GGATC	1 cut(s)	642
AcoI	YGGCCR	2 cut(s)	36, 597
AcsI	RAATTY	1 cut(s)	648
AcuI	CTGAAG	1 cut(s)	163
AfiI	CCNNNNNNNGG	3 cut(s)	221, 433, 630
AflII	CTTAAG	1 cut(s)	428
AflIII	ACRYGT	1 cut(s)	44
AgsI	TTSAA	2 cut(s)	364, 642
AhlI	ACTAGT	1 cut(s)	463
AjnI	CCWGG	4 cut(s)	33, 196, 256, 483
AluBI	AGCT	4 cut(s)	111, 164, 373, 412
AluI	AGCT	4 cut(s)	111, 164, 373, 412
AlwI	GGATC	1 cut(s)	642
AlwNI	CAGNNNCTG	1 cut(s)	497
Ama87I	CYCGRG	1 cut(s)	401
AoxI	GGCC	2 cut(s)	36, 597
ApeKI	GCWGC	1 cut(s)	522
ApoI	RAATTY	1 cut(s)	648
AspLEI	GCGC	1 cut(s)	341
AspS9I	GGNCC	2 cut(s)	424, 567
AsuHPI	GGTGA	2 cut(s)	223, 449
AvaI	CYCGRG	1 cut(s)	401
AvaII	GGWCC	2 cut(s)	424, 567
BalI	TGGCCA	2 cut(s)	38, 599
BbvI	GCAGC	1 cut(s)	534
BccI	CCATC	1 cut(s)	339
BcgI	CGANNNNNNTGC	2 cut(s)	265, 299
BciT130I	CCWGG	4 cut(s)	35, 198, 258, 485
BcuI	ACTAGT	1 cut(s)	463
BfaI	CTAG	4 cut(s)	72, 108, 464, 534
BfrI	CTTAAG	1 cut(s)	428
BisI	GCNGC	1 cut(s)	523
BlpI	GCTNAGC	1 cut(s)	165
BlsI	GCNGC	1 cut(s)	524
Bme1390I	CCNGG	4 cut(s)	35, 198, 258, 485
Bme18I	GGWCC	2 cut(s)	424, 567
BmeT110I	CYCGRG	1 cut(s)	401
BmgT120I	GGNCC	2 cut(s)	424, 567
BmiI	GGNNCC	1 cut(s)	568
BmrFI	CCNGG	4 cut(s)	35, 198, 258, 485
BmsI	GCATC	2 cut(s)	91, 285
Bpu1102I	GCTNAGC	1 cut(s)	165
BpuEI	CTTGAG	1 cut(s)	538
BsaJI	CCNNGG	5 cut(s)	196, 271, 420, 484, 585
Bsc4I	CCNNNNNNNGG	3 cut(s)	221, 433, 630
Bse3DI	GCAATG	3 cut(s)	57, 77, 546
BseBI	CCWGG	4 cut(s)	35, 198, 258, 485
BseDI	CCNNGG	5 cut(s)	196, 271, 420, 484, 585
BseGI	GGATG	3 cut(s)	192, 331, 595
BseLI	CCNNNNNNNGG	3 cut(s)	221, 433, 630
BseMI	GCAATG	3 cut(s)	57, 77, 546
BseMII	CTCAG	3 cut(s)	126, 156, 263
BseXI	GCAGC	1 cut(s)	534
Bsh1236I	CGCG	1 cut(s)	339
BshFI	GGCC	2 cut(s)	38, 599
BsiHKCI	CYCGRG	1 cut(s)	401
BslI	CCNNNNNNNGG	3 cut(s)	221, 433, 630
BsnI	GGCC	2 cut(s)	38, 599
BsoBI	CYCGRG	1 cut(s)	401
Bsp143I	GATC	1 cut(s)	634
Bsp1720I	GCTNAGC	1 cut(s)	165
BspACI	CCGC	1 cut(s)	183
BspANI	GGCC	2 cut(s)	38, 599
BspCNI	CTCAG	3 cut(s)	125, 157, 262
BspFNI	CGCG	1 cut(s)	339
BspLI	GGNNCC	1 cut(s)	568
BspPI	GGATC	1 cut(s)	642
BspTI	CTTAAG	1 cut(s)	428
BsrDI	GCAATG	3 cut(s)	57, 77, 546
BssECI	CCNNGG	5 cut(s)	196, 271, 420, 484, 585
BssMI	GATC	1 cut(s)	634
BssT1I	CCWWGG	1 cut(s)	420
Bst2UI	CCWGG	4 cut(s)	35, 198, 258, 485
Bst4CI	ACNGT	1 cut(s)	358
BstAFI	CTTAAG	1 cut(s)	428
BstC8I	GCNNGC	2 cut(s)	289, 371
BstDEI	CTNAG	3 cut(s)	112, 165, 249
BstEII	GGTNACC	1 cut(s)	132
BstENI	CCTNNNNNAGG	1 cut(s)	431
BstF5I	GGATG	3 cut(s)	192, 331, 595
BstFNI	CGCG	1 cut(s)	339
BstHHI	GCGC	1 cut(s)	341
BstKTI	GATC	1 cut(s)	637
BstMBI	GATC	1 cut(s)	634
BstNI	CCWGG	4 cut(s)	35, 198, 258, 485
BstNSI	RCATGY	1 cut(s)	48
BstPI	GGTNACC	1 cut(s)	132
BstSCI	CCNGG	4 cut(s)	33, 196, 256, 483
BstUI	CGCG	1 cut(s)	339
BstV1I	GCAGC	1 cut(s)	534
BsuRI	GGCC	2 cut(s)	38, 599
BtsCI	GGATG	3 cut(s)	192, 331, 595
Cac8I	GCNNGC	2 cut(s)	289, 371
CaiI	CAGNNNCTG	1 cut(s)	497
CfoI	GCGC	1 cut(s)	341
Cfr13I	GGNCC	2 cut(s)	424, 567
CviAII	CATG	3 cut(s)	40, 45, 666
DdeI	CTNAG	3 cut(s)	112, 165, 249
DpnI	GATC	1 cut(s)	636
DpnII	GATC	1 cut(s)	634
EaeI	YGGCCR	2 cut(s)	36, 597
Eco130I	CCWWGG	1 cut(s)	420
Eco47I	GGWCC	2 cut(s)	424, 567
Eco57I	CTGAAG	1 cut(s)	163
Eco88I	CYCGRG	1 cut(s)	401
Eco91I	GGTNACC	1 cut(s)	132
EcoNI	CCTNNNNNAGG	1 cut(s)	431
EcoO109I	RGGNCCY	1 cut(s)	424
EcoO65I	GGTNACC	1 cut(s)	132
EcoRII	CCWGG	4 cut(s)	33, 196, 256, 483
EcoT14I	CCWWGG	1 cut(s)	420
ErhI	CCWWGG	1 cut(s)	420
FaeI	CATG	3 cut(s)	43, 48, 669
FaiI	YATR	6 cut(s)	41, 46, 667, 687, 697, 714
FatI	CATG	3 cut(s)	39, 44, 665
Fnu4HI	GCNGC	1 cut(s)	523
FokI	GGATG	3 cut(s)	179, 318, 602
Fsp4HI	GCNGC	1 cut(s)	523
FspBI	CTAG	4 cut(s)	72, 108, 464, 534
GlaI	GCGC	1 cut(s)	340
GluI	GCNGC	1 cut(s)	523
HaeIII	GGCC	2 cut(s)	38, 599
HhaI	GCGC	1 cut(s)	341
Hin1II	CATG	3 cut(s)	43, 48, 669
Hin6I	GCGC	1 cut(s)	339
HinP1I	GCGC	1 cut(s)	339
HincII	GTYRAC	2 cut(s)	24, 541
HindII	GTYRAC	2 cut(s)	24, 541
HinfI	GANTC	6 cut(s)	146, 186, 253, 261, 349, 537
HpaI	GTTAAC	1 cut(s)	24
HphI	GGTGA	2 cut(s)	223, 449
Hpy166II	GTNNAC	3 cut(s)	24, 469, 541
Hpy188I	TCNGA	3 cut(s)	252, 354, 586
Hpy188III	TCNNGA	2 cut(s)	361, 492
Hpy8I	GTNNAC	3 cut(s)	24, 469, 541
HpyAV	CCTTC	1 cut(s)	427
HpyCH4III	ACNGT	1 cut(s)	358
HpyCH4V	TGCA	1 cut(s)	82
HpyF3I	CTNAG	3 cut(s)	112, 165, 249
Hsp92II	CATG	3 cut(s)	43, 48, 669
HspAI	GCGC	1 cut(s)	339
KspAI	GTTAAC	1 cut(s)	24
Kzo9I	GATC	1 cut(s)	634
Lsp1109I	GCAGC	1 cut(s)	534
LweI	GCATC	2 cut(s)	91, 285
MaeI	CTAG	4 cut(s)	72, 108, 464, 534
MaeIII	GTNAC	4 cut(s)	115, 132, 229, 388
MalI	GATC	1 cut(s)	636
MboI	GATC	1 cut(s)	634
MboII	GAAGA	4 cut(s)	22, 166, 169, 504
MlsI	TGGCCA	2 cut(s)	38, 599
MluCI	AATT	5 cut(s)	627, 648, 672, 677, 708
MluNI	TGGCCA	2 cut(s)	38, 599
MlyI	GAGTC	4 cut(s)	140, 180, 255, 546
MmeI	TCCRAC	1 cut(s)	439
MnlI	CCTC	7 cut(s)	217, 281, 330, 345, 403, 580, 715
Mox20I	TGGCCA	2 cut(s)	38, 599
MscI	TGGCCA	2 cut(s)	38, 599
MseI	TTAA	4 cut(s)	23, 126, 429, 675
Msp20I	TGGCCA	2 cut(s)	38, 599
MspA1I	CMGCKG	2 cut(s)	164, 183
MspCI	CTTAAG	1 cut(s)	428
MspR9I	CCNGG	4 cut(s)	35, 198, 258, 485
MvaI	CCWGG	4 cut(s)	35, 198, 258, 485
MvnI	CGCG	1 cut(s)	339
NdeII	GATC	1 cut(s)	634
NlaIII	CATG	3 cut(s)	43, 48, 669
NlaIV	GGNNCC	1 cut(s)	568
NmeAIII	GCCGAG	1 cut(s)	252
NmuCI	GTSAC	2 cut(s)	229, 388
NspI	RCATGY	1 cut(s)	48
PciI	ACATGT	1 cut(s)	44
PfeI	GAWTC	2 cut(s)	253, 349
PfoI	TCCNGGA	1 cut(s)	256
PkrI	GCNGC	1 cut(s)	524
PleI	GAGTC	4 cut(s)	140, 180, 255, 545
PpsI	GAGTC	4 cut(s)	140, 180, 255, 545
PpuMI	RGGWCCY	1 cut(s)	424
PscI	ACATGT	1 cut(s)	44
Psp5II	RGGWCCY	1 cut(s)	424
Psp6I	CCWGG	4 cut(s)	33, 196, 256, 483
PspEI	GGTNACC	1 cut(s)	132
PspGI	CCWGG	4 cut(s)	33, 196, 256, 483
PspN4I	GGNNCC	1 cut(s)	568
PspPI	GGNCC	2 cut(s)	424, 567
PspPPI	RGGWCCY	1 cut(s)	424
PstNI	CAGNNNCTG	1 cut(s)	497
PvuII	CAGCTG	1 cut(s)	164
SaqAI	TTAA	4 cut(s)	23, 126, 429, 675
SatI	GCNGC	1 cut(s)	523
Sau3AI	GATC	1 cut(s)	634
Sau96I	GGNCC	2 cut(s)	424, 567
SchI	GAGTC	4 cut(s)	140, 180, 255, 546
ScrFI	CCNGG	4 cut(s)	35, 198, 258, 485
SetI	ASST	9 cut(s)	113, 139, 166, 209, 375, 395, 414, 426, 486
SfaNI	GCATC	2 cut(s)	91, 285
SinI	GGWCC	2 cut(s)	424, 567
SmlI	CTYRAG	2 cut(s)	428, 517
SmoI	CTYRAG	2 cut(s)	428, 517
SpeI	ACTAGT	1 cut(s)	463
Sse9I	AATT	5 cut(s)	627, 648, 672, 677, 708
SsiI	CCGC	1 cut(s)	183
SspMI	CTAG	4 cut(s)	72, 108, 464, 534
StyD4I	CCNGG	4 cut(s)	33, 196, 256, 483
StyI	CCWWGG	1 cut(s)	420
TaaI	ACNGT	1 cut(s)	358
TaqI	TCGA	1 cut(s)	395
TasI	AATT	5 cut(s)	627, 648, 672, 677, 708
TfiI	GAWTC	2 cut(s)	253, 349
Tru1I	TTAA	4 cut(s)	23, 126, 429, 675
Tru9I	TTAA	4 cut(s)	23, 126, 429, 675
TseFI	GTSAC	2 cut(s)	229, 388
TseI	GCWGC	1 cut(s)	522
Tsp45I	GTSAC	2 cut(s)	229, 388
TspDTI	ATGAA	1 cut(s)	684
TspGWI	ACGGA	1 cut(s)	613
Vha464I	CTTAAG	1 cut(s)	428
VpaK11BI	GGWCC	2 cut(s)	424, 567
XagI	CCTNNNNNAGG	1 cut(s)	431
XapI	RAATTY	1 cut(s)	648
XceI	RCATGY	1 cut(s)	48
XspI	CTAG	4 cut(s)	72, 108, 464, 534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.