Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0006171

Physical Location & Seq

Genomic Coordinates Forward (+)

26446050 .. 26446964

Gene Structure 915 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGTCTAGCAGCCAAAAATGGGGTGTCGTGAAGGGTGTGGATGCAAACGAGCATACAGTAAAGGTGCAATGGAAAACTATCCCTGCACCTAAAGAAAATTACTCTGAGGGAAAACAGATGGAGGAAATTGTGAGCGCTTATGAACTAGTTGAGCACCCAGATTACTCCTACTGTTTTGGAGATTATGTGTTCAGGTTGGTCCAGAACCAGTTTGATGAACAAGCGGATAAAAACTATCTGCTCACAAAGATTGACATGAGCGAGGAAGCTGCTTCTGAAAAAAAGGACTGCGGTGGGGATCAAGAGGATTACACTGATAAATGTTACCTATCTCACATTGGAAATGTTATGGGCTTCAAGGATGGAGCTGTGGAAGTGAGATGGGCTACTGGTATTACAGGCAAGGTGGCCCCTAATGAAATTTTCCGGTTTGACAAACATGAAGGTTCAGCTGCAATTCCTGCAGAAGATGACATCGAAGACTTGTACCGAGAGATGATTCAAAATGCAAAGCAACCTTCTAACCAGAAGGGAAAGTTTATTGAATTCATTGAATTTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006464 GO:0006807 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0010966 GO:0012505 GO:0015698 GO:0016036 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0030163 GO:0031625 GO:0031667 GO:0031668 GO:0031669 GO:0032446 GO:0032879 GO:0033554 GO:0034762 GO:0034765 GO:0036211 GO:0042592 GO:0042594 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043412 GO:0044070 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0048878 GO:0050789 GO:0050801 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051716 GO:0055062 GO:0055081 GO:0055083 GO:0061630 GO:0061659 GO:0065007 GO:0065008 GO:0070647 GO:0071496 GO:0071704 GO:0072505 GO:0072506 GO:0098771 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1903795 GO:1903959 GO:2000185

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

188

Amino Acids

21.27

Weight (kDa)

4.69

Isoelectric Point (pI)

38.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SH3-B_UBE2O	PF23043	3 - 54	1.5e-10	UBE2O, SH3-B domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33770
fragaria_vesca	FvH4_3g09200 FvH4_3g29950
malus_domestica	MD05G1312700.v1.1 MD10G1294500.v1.1
prunus_persica	Prupe.4G047400_v2.0.a1 Prupe.4G047400_v2.0.a1
pyrus_communis	pycom05g29070 pycom05g29080 pycom10g24620 pycom10g24630 pycom10g24640
rosa_chinensis	RchiOBHm_Chr5g0008401
rosa_laevigata	RLG00000031568
rosa_multiflora	Rmu_co8007308.1_g000001 Rmu_co8292313.1_g000001 Rmu_sc0004326.1_g000003 Rmu_sc0028200.1_g000001 Rmu_ssc0000388.1_g000061
rosa_roxburghii	Rroxscaffold_1G00068090
rosa_rugosa	Rorug04G0435600
rosa_samantha	Rh5AG064200 Rh5BG061400 Rh5CG071300 Rh5DG060200 Rh5DG060300
rosa_wichuraiana	Rw5G005660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	224, 291
AclWI	GGATC	1 cut(s)	306
AcsI	RAATTY	3 cut(s)	420, 545, 554
AfaI	GTAC	1 cut(s)	488
AfeI	AGCGCT	1 cut(s)	136
AfiI	CCNNNNNNNGG	1 cut(s)	19
AgsI	TTSAA	4 cut(s)	358, 503, 545, 554
AhlI	ACTAGT	1 cut(s)	145
AluBI	AGCT	3 cut(s)	269, 368, 452
AluI	AGCT	3 cut(s)	269, 368, 452
Alw21I	GWGCWC	1 cut(s)	156
AlwI	GGATC	1 cut(s)	306
Aor51HI	AGCGCT	1 cut(s)	136
AoxI	GGCC	1 cut(s)	408
ApeKI	GCWGC	3 cut(s)	9, 269, 452
ApoI	RAATTY	3 cut(s)	420, 545, 554
AspLEI	GCGC	1 cut(s)	137
AspS9I	GGNCC	2 cut(s)	199, 409
AvaII	GGWCC	1 cut(s)	199
BbsI	GAAGAC	1 cut(s)	486
Bbv12I	GWGCWC	1 cut(s)	156
BbvI	GCAGC	3 cut(s)	21, 256, 439
BccI	CCATC	3 cut(s)	112, 356, 375
BcgI	CGANNNNNNTGC	2 cut(s)	251, 285
BcuI	ACTAGT	1 cut(s)	145
BfaI	CTAG	2 cut(s)	6, 146
BfmI	CTRYAG	1 cut(s)	462
BfoI	RGCGCY	1 cut(s)	138
BisI	GCNGC	3 cut(s)	10, 270, 453
BlsI	GCNGC	3 cut(s)	11, 271, 454
Bme18I	GGWCC	1 cut(s)	199
BmgT120I	GGNCC	2 cut(s)	199, 409
BmiI	GGNNCC	1 cut(s)	411
BmsI	GCATC	1 cut(s)	31
BpiI	GAAGAC	1 cut(s)	486
BsaWI	WCCGGW	1 cut(s)	426
BsaXI	ACNNNNNCTCC	2 cut(s)	171, 201
Bsc4I	CCNNNNNNNGG	1 cut(s)	19
Bse1I	ACTGG	2 cut(s)	208, 394
Bse3DI	GCAATG	1 cut(s)	74
BseGI	GGATG	2 cut(s)	46, 367
BseLI	CCNNNNNNNGG	1 cut(s)	19
BseMI	GCAATG	1 cut(s)	74
BseMII	CTCAG	1 cut(s)	96
BseNI	ACTGG	2 cut(s)	208, 394
BseXI	GCAGC	3 cut(s)	21, 256, 439
BsgI	GTGCAG	1 cut(s)	69
BshFI	GGCC	1 cut(s)	410
BsiHKAI	GWGCWC	1 cut(s)	156
BsiSI	CCGG	1 cut(s)	427
BslI	CCNNNNNNNGG	1 cut(s)	19
BsnI	GGCC	1 cut(s)	410
Bsp1286I	GDGCHC	1 cut(s)	156
Bsp143I	GATC	1 cut(s)	298
BspACI	CCGC	2 cut(s)	224, 291
BspANI	GGCC	1 cut(s)	410
BspCNI	CTCAG	1 cut(s)	97
BspLI	GGNNCC	1 cut(s)	411
BspMAI	CTGCAG	1 cut(s)	466
BspPI	GGATC	1 cut(s)	306
BsrDI	GCAATG	1 cut(s)	74
BsrI	ACTGG	2 cut(s)	208, 394
BssMI	GATC	1 cut(s)	298
Bst4CI	ACNGT	2 cut(s)	58, 173
BstAPI	GCANNNNNTGC	1 cut(s)	461
BstDEI	CTNAG	1 cut(s)	105
BstF5I	GGATG	2 cut(s)	46, 367
BstH2I	RGCGCY	1 cut(s)	138
BstHHI	GCGC	1 cut(s)	137
BstKTI	GATC	1 cut(s)	301
BstMBI	GATC	1 cut(s)	298
BstMWI	GCNNNNNNNGC	1 cut(s)	461
BstSFI	CTRYAG	1 cut(s)	462
BstV1I	GCAGC	3 cut(s)	21, 256, 439
BstV2I	GAAGAC	1 cut(s)	486
BsuRI	GGCC	1 cut(s)	410
BtsCI	GGATG	2 cut(s)	46, 367
BtsIMutI	CAGTG	1 cut(s)	312
CfoI	GCGC	1 cut(s)	137
Cfr13I	GGNCC	2 cut(s)	199, 409
Csp6I	GTAC	1 cut(s)	487
CviAII	CATG	2 cut(s)	256, 440
CviJI	RGCY	7 cut(s)	12, 269, 354, 368, 386, 410, 452
CviKI_1	RGCY	7 cut(s)	12, 269, 354, 368, 386, 410, 452
CviQI	GTAC	1 cut(s)	487
DdeI	CTNAG	1 cut(s)	105
DpnI	GATC	1 cut(s)	300
DpnII	GATC	1 cut(s)	298
Eco47I	GGWCC	1 cut(s)	199
Eco47III	AGCGCT	1 cut(s)	136
EcoRI	GAATTC	1 cut(s)	545
FaeI	CATG	2 cut(s)	259, 443
FaiI	YATR	6 cut(s)	54, 141, 186, 257, 350, 441
FatI	CATG	2 cut(s)	255, 439
Fnu4HI	GCNGC	3 cut(s)	10, 270, 453
FokI	GGATG	2 cut(s)	53, 374
Fsp4HI	GCNGC	3 cut(s)	10, 270, 453
FspBI	CTAG	2 cut(s)	6, 146
GlaI	GCGC	1 cut(s)	136
GluI	GCNGC	3 cut(s)	10, 270, 453
HaeII	RGCGCY	1 cut(s)	138
HaeIII	GGCC	1 cut(s)	410
HapII	CCGG	1 cut(s)	427
HhaI	GCGC	1 cut(s)	137
Hin1II	CATG	2 cut(s)	259, 443
Hin6I	GCGC	1 cut(s)	135
HinP1I	GCGC	1 cut(s)	135
HinfI	GANTC	1 cut(s)	499
HpaII	CCGG	1 cut(s)	427
Hpy188I	TCNGA	2 cut(s)	106, 277
Hpy188III	TCNNGA	3 cut(s)	28, 202, 302
HpyAV	CCTTC	4 cut(s)	25, 437, 523, 528
HpyCH4III	ACNGT	2 cut(s)	58, 173
HpyCH4V	TGCA	6 cut(s)	44, 67, 86, 455, 464, 509
HpyF10VI	GCNNNNNNNGC	1 cut(s)	461
HpyF3I	CTNAG	1 cut(s)	105
Hsp92II	CATG	2 cut(s)	259, 443
HspAI	GCGC	1 cut(s)	135
Kzo9I	GATC	1 cut(s)	298
LmnI	GCTCC	1 cut(s)	365
Lsp1109I	GCAGC	3 cut(s)	21, 256, 439
LweI	GCATC	1 cut(s)	31
MaeI	CTAG	2 cut(s)	6, 146
MaeIII	GTNAC	1 cut(s)	323
MalI	GATC	1 cut(s)	300
MboI	GATC	1 cut(s)	298
MboII	GAAGA	2 cut(s)	479, 491
MhlI	GDGCHC	1 cut(s)	156
MluCI	AATT	6 cut(s)	97, 126, 420, 456, 545, 554
MnlI	CCTC	4 cut(s)	100, 115, 256, 298
MspA1I	CMGCKG	1 cut(s)	452
MspI	CCGG	1 cut(s)	427
MwoI	GCNNNNNNNGC	1 cut(s)	461
NdeII	GATC	1 cut(s)	298
NlaIII	CATG	2 cut(s)	259, 443
NlaIV	GGNNCC	1 cut(s)	411
PfeI	GAWTC	1 cut(s)	499
PkrI	GCNGC	3 cut(s)	11, 271, 454
PspN4I	GGNNCC	1 cut(s)	411
PspPI	GGNCC	2 cut(s)	199, 409
PstI	CTGCAG	1 cut(s)	466
PvuII	CAGCTG	1 cut(s)	452
RsaI	GTAC	1 cut(s)	488
RsaNI	GTAC	1 cut(s)	487
SatI	GCNGC	3 cut(s)	10, 270, 453
Sau3AI	GATC	1 cut(s)	298
Sau96I	GGNCC	2 cut(s)	199, 409
SduI	GDGCHC	1 cut(s)	156
SfaNI	GCATC	1 cut(s)	31
SfcI	CTRYAG	1 cut(s)	462
SinI	GGWCC	1 cut(s)	199
SpeI	ACTAGT	1 cut(s)	145
Sse9I	AATT	6 cut(s)	97, 126, 420, 456, 545, 554
SsiI	CCGC	2 cut(s)	224, 291
SspMI	CTAG	2 cut(s)	6, 146
TaaI	ACNGT	2 cut(s)	58, 173
TaqI	TCGA	1 cut(s)	477
TasI	AATT	6 cut(s)	97, 126, 420, 456, 545, 554
TfiI	GAWTC	1 cut(s)	499
TscAI	CASTG	1 cut(s)	319
TseI	GCWGC	3 cut(s)	9, 269, 452
TspDTI	ATGAA	5 cut(s)	156, 231, 432, 456, 538
TspRI	CASTG	1 cut(s)	319
VpaK11BI	GGWCC	1 cut(s)	199
XapI	RAATTY	3 cut(s)	420, 545, 554
XspI	CTAG	2 cut(s)	6, 146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.