Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0006171

Physical Location & Seq

Genomic Coordinates Forward (+)

26447188 .. 26448546

Gene Structure 1359 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGACTGAGCTGGAGAGGTTTGAGGAGAAGAGCATTCCACATTCAAAAGCTAATGAGAGTGCAGATCAGTTTAGGCAGTTTGACATAGTTGCTGATTGCACCGACCACCATTTTCATGGTGCTAACAAGGAGTTGGCATTATCTCAGGTGAAAAGAGGCTGGATGAAAAAGGTTCAACAAGAGTGGAGCATCTTCGAGAAAGATCTGCCTGAACAAATCTATGTCCGTGCCTTCGAGGAAAGGATGGATCTACTGCGAGCAGCCATTGTTGGTGCACCTGGAACTCCATATCATGATGGGCTTTTCTTCTTTGATATTTATCTTCCACCCGAGTATCCTCATGAACCGCCTATGGTACACTATAGTTCTGGTGGGCTACGTGTCAACCCTAACTTGTACGAGTCCGGAAAAGTCTGTCTCAGTCTCCTTAATACATGGATGGGCACAGGCACTGAAGTTTGGAATCCAGGGAGCTCCACCATTCTTCAAGTTCTTCTCTCCCTTCAAGCCCTTGTGCTTAACGACAAGCCATATTTCAATGAAGCTGGGTATGATCAACAGATAGGAAGAACCCAAGGAGAGAAAAACTCCGTAAGCTACAACGAAAATGCATTCCTGATGACATGCAAGTCCATGCTGTATACACTCCAAAAGCCACCTAAGCATTTTGAGGAGCTTGTTATCGAACACTTCACTCGGCGCTCCCAAAATATTCTAACGGCGTGTAAGGAGTATATGGACGGGGCTCCAGTAGGGTGTGCTATTGATTTCCAGAAAACTGAAGATAAACACAGTAAGGGAAGCTCTACCGGGTTCAAAATCATGCTTTCTAAGCTAGTTCCAAAATTGGTTGAGGCACTTTCCAGCAAGGGAATTGACTGCAACCGGTTCATGGGGCCGGAGAAATGCACATGGTGCAAAATTGTAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006464 GO:0006807 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0010966 GO:0012505 GO:0015698 GO:0016036 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0030163 GO:0031625 GO:0031667 GO:0031668 GO:0031669 GO:0032446 GO:0032879 GO:0033554 GO:0034762 GO:0034765 GO:0036211 GO:0042592 GO:0042594 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043412 GO:0044070 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0048878 GO:0050789 GO:0050801 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051716 GO:0055062 GO:0055081 GO:0055083 GO:0061630 GO:0061659 GO:0065007 GO:0065008 GO:0070647 GO:0071496 GO:0071704 GO:0072505 GO:0072506 GO:0098771 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1903795 GO:1903959 GO:2000185

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

311

Amino Acids

35.3

Weight (kDa)

6.08

Isoelectric Point (pI)

41.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	58 - 204	4.5e-24	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33770
fragaria_vesca	FvH4_3g09200 FvH4_3g29950
malus_domestica	MD05G1312700.v1.1 MD10G1294500.v1.1
prunus_persica	Prupe.4G047400_v2.0.a1 Prupe.4G047400_v2.0.a1
pyrus_communis	pycom05g29070 pycom05g29080 pycom10g24620 pycom10g24630 pycom10g24640
rosa_chinensis	RchiOBHm_Chr5g0008401
rosa_laevigata	RLG00000031568
rosa_multiflora	Rmu_co8007308.1_g000001 Rmu_co8292313.1_g000001 Rmu_sc0004326.1_g000003 Rmu_sc0028200.1_g000001 Rmu_ssc0000388.1_g000061
rosa_roxburghii	Rroxscaffold_1G00068090
rosa_rugosa	Rorug04G0435600
rosa_samantha	Rh5AG064200 Rh5BG061400 Rh5CG071300 Rh5DG060200 Rh5DG060300
rosa_wichuraiana	Rw5G005660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	628
AccI	GTMKAC	1 cut(s)	641
AccIII	TCCGGA	1 cut(s)	404
AciI	CCGC	1 cut(s)	347
AclWI	GGATC	1 cut(s)	255
AcuI	CTGAAG	2 cut(s)	474, 801
AdeI	CACNNNGTG	1 cut(s)	915
AfaI	GTAC	2 cut(s)	357, 398
AfiI	CCNNNNNNNGG	1 cut(s)	892
AflIII	ACRYGT	1 cut(s)	379
AgeI	ACCGGT	1 cut(s)	885
AgsI	TTSAA	6 cut(s)	45, 176, 488, 506, 538, 817
AjnI	CCWGG	2 cut(s)	277, 466
AluBI	AGCT	8 cut(s)	10, 50, 474, 545, 597, 676, 804, 835
AluI	AGCT	8 cut(s)	10, 50, 474, 545, 597, 676, 804, 835
Alw21I	GWGCWC	2 cut(s)	277, 476
Alw26I	GTCTC	2 cut(s)	422, 428
Alw44I	GTGCAC	1 cut(s)	273
AlwI	GGATC	1 cut(s)	255
AlwNI	CAGNNNCTG	1 cut(s)	452
Ama87I	CYCGRG	1 cut(s)	329
Aor13HI	TCCGGA	1 cut(s)	404
AoxI	GGCC	1 cut(s)	896
ApaLI	GTGCAC	1 cut(s)	273
ApeKI	GCWGC	1 cut(s)	260
AsiGI	ACCGGT	1 cut(s)	885
AspLEI	GCGC	1 cut(s)	702
AspS9I	GGNCC	1 cut(s)	896
AsuC2I	CCSGG	1 cut(s)	811
AsuHPI	GGTGA	1 cut(s)	160
AvaI	CYCGRG	1 cut(s)	329
BaeGI	GKGCMC	2 cut(s)	277, 446
BaeI	ACNNNNGTAYC	2 cut(s)	317, 350
BanII	GRGCYC	2 cut(s)	476, 748
Bbv12I	GWGCWC	2 cut(s)	277, 476
BbvI	GCAGC	1 cut(s)	272
BccI	CCATC	3 cut(s)	238, 290, 433
BceAI	ACGGC	1 cut(s)	735
BciT130I	CCWGG	2 cut(s)	279, 468
BciVI	GTATCC	1 cut(s)	345
BclI	TGATCA	1 cut(s)	553
BcnI	CCSGG	1 cut(s)	811
BcoDI	GTCTC	2 cut(s)	422, 428
BfaI	CTAG	1 cut(s)	836
BfmI	CTRYAG	1 cut(s)	361
BfoI	RGCGCY	1 cut(s)	703
BfuI	GTATCC	1 cut(s)	345
BglII	AGATCT	1 cut(s)	202
BisI	GCNGC	1 cut(s)	261
BlsI	GCNGC	1 cut(s)	262
Bme1390I	CCNGG	3 cut(s)	279, 468, 811
BmeT110I	CYCGRG	1 cut(s)	329
BmgT120I	GGNCC	1 cut(s)	896
BmiI	GGNNCC	2 cut(s)	747, 897
BmrFI	CCNGG	3 cut(s)	279, 468, 811
BmsI	GCATC	1 cut(s)	198
BplI	GAGNNNNNCTC	2 cut(s)	572, 604
BpmI	CTGGAG	2 cut(s)	32, 732
Bpu10I	CCTNAGC	1 cut(s)	660
BpuMI	CCSGG	1 cut(s)	811
BsaAI	YACGTR	1 cut(s)	380
BsaBI	GATNNNNATC	1 cut(s)	318
BsaJI	CCNNGG	2 cut(s)	467, 574
BsaWI	WCCGGW	2 cut(s)	404, 885
Bsc4I	CCNNNNNNNGG	1 cut(s)	892
Bse118I	RCCGGY	1 cut(s)	885
Bse1I	ACTGG	1 cut(s)	749
Bse8I	GATNNNNATC	1 cut(s)	318
BseAI	TCCGGA	1 cut(s)	404
BseBI	CCWGG	2 cut(s)	279, 468
BseDI	CCNNGG	2 cut(s)	467, 574
BseGI	GGATG	3 cut(s)	168, 249, 444
BseJI	GATNNNNATC	1 cut(s)	318
BseLI	CCNNNNNNNGG	1 cut(s)	892
BseMII	CTCAG	2 cut(s)	158, 433
BseNI	ACTGG	1 cut(s)	749
BseRI	GAGGAG	2 cut(s)	38, 686
BseSI	GKGCMC	2 cut(s)	277, 446
BseXI	GCAGC	1 cut(s)	272
BseYI	CCCAGC	1 cut(s)	545
BsgI	GTGCAG	1 cut(s)	81
BshFI	GGCC	1 cut(s)	898
BshTI	ACCGGT	1 cut(s)	885
BsiHKAI	GWGCWC	2 cut(s)	277, 476
BsiHKCI	CYCGRG	1 cut(s)	329
BsiSI	CCGG	4 cut(s)	405, 810, 886, 899
BslI	CCNNNNNNNGG	1 cut(s)	892
BsmAI	GTCTC	2 cut(s)	422, 428
BsmI	GAATGC	2 cut(s)	33, 611
BsnI	GGCC	1 cut(s)	898
BsoBI	CYCGRG	1 cut(s)	329
Bsp1286I	GDGCHC	4 cut(s)	277, 446, 476, 748
Bsp13I	TCCGGA	1 cut(s)	404
Bsp143I	GATC	4 cut(s)	64, 202, 247, 553
BspACI	CCGC	1 cut(s)	347
BspANI	GGCC	1 cut(s)	898
BspCNI	CTCAG	2 cut(s)	157, 432
BspEI	TCCGGA	1 cut(s)	404
BspHI	TCATGA	2 cut(s)	292, 340
BspLI	GGNNCC	2 cut(s)	747, 897
BspPI	GGATC	1 cut(s)	255
BspQI	GCTCTTC	1 cut(s)	23
BsrFI	RCCGGY	1 cut(s)	885
BsrI	ACTGG	1 cut(s)	749
BssAI	RCCGGY	1 cut(s)	885
BssECI	CCNNGG	2 cut(s)	467, 574
BssMI	GATC	4 cut(s)	64, 202, 247, 553
BssNAI	GTATAC	1 cut(s)	642
BssT1I	CCWWGG	1 cut(s)	574
Bst1107I	GTATAC	1 cut(s)	642
Bst2UI	CCWGG	2 cut(s)	279, 468
Bst4CI	ACNGT	1 cut(s)	794
Bst6I	CTCTTC	1 cut(s)	23
BstAPI	GCANNNNNTGC	1 cut(s)	915
BstBAI	YACGTR	1 cut(s)	380
BstC8I	GCNNGC	1 cut(s)	258
BstDEI	CTNAG	5 cut(s)	6, 144, 419, 660, 831
BstF5I	GGATG	3 cut(s)	168, 249, 444
BstH2I	RGCGCY	1 cut(s)	703
BstHHI	GCGC	1 cut(s)	702
BstKTI	GATC	4 cut(s)	67, 205, 250, 556
BstMAI	GTCTC	2 cut(s)	422, 428
BstMBI	GATC	4 cut(s)	64, 202, 247, 553
BstMWI	GCNNNNNNNGC	3 cut(s)	661, 832, 915
BstNI	CCWGG	2 cut(s)	279, 468
BstNSI	RCATGY	1 cut(s)	627
BstSCI	CCNGG	3 cut(s)	277, 466, 809
BstSFI	CTRYAG	1 cut(s)	361
BstSLI	GKGCMC	2 cut(s)	277, 446
BstV1I	GCAGC	1 cut(s)	272
BstX2I	RGATCY	2 cut(s)	202, 247
BstXI	CCANNNNNNTGG	1 cut(s)	116
BstYI	RGATCY	2 cut(s)	202, 247
BstZ17I	GTATAC	1 cut(s)	642
BsuI	GTATCC	1 cut(s)	345
BsuRI	GGCC	1 cut(s)	898
BtsCI	GGATG	3 cut(s)	168, 249, 444
BtsIMutI	CAGTG	1 cut(s)	450
Cac8I	GCNNGC	1 cut(s)	258
CaiI	CAGNNNCTG	1 cut(s)	452
CciI	TCATGA	2 cut(s)	292, 340
CfoI	GCGC	1 cut(s)	702
Cfr10I	RCCGGY	1 cut(s)	885
Cfr13I	GGNCC	1 cut(s)	896
Csp6I	GTAC	2 cut(s)	356, 397
CspAI	ACCGGT	1 cut(s)	885
CspCI	CAANNNNNGTGG	2 cut(s)	164, 199
CviAII	CATG	9 cut(s)	116, 293, 341, 435, 624, 634, 823, 892, 912
CviQI	GTAC	2 cut(s)	356, 397
DdeI	CTNAG	5 cut(s)	6, 144, 419, 660, 831
DpnI	GATC	4 cut(s)	66, 204, 249, 555
DpnII	GATC	4 cut(s)	64, 202, 247, 553
DraIII	CACNNNGTG	1 cut(s)	915
DrdI	GACNNNNNNGTC	1 cut(s)	628
DseDI	GACNNNNNNGTC	1 cut(s)	628
Eam1104I	CTCTTC	1 cut(s)	23
EarI	CTCTTC	1 cut(s)	23
Ecl136II	GAGCTC	1 cut(s)	474
Eco130I	CCWWGG	1 cut(s)	574
Eco24I	GRGCYC	2 cut(s)	476, 748
Eco53kI	GAGCTC	1 cut(s)	474
Eco57I	CTGAAG	2 cut(s)	474, 801
Eco88I	CYCGRG	1 cut(s)	329
EcoICRI	GAGCTC	1 cut(s)	474
EcoRII	CCWGG	2 cut(s)	277, 466
EcoT14I	CCWWGG	1 cut(s)	574
EcoT22I	ATGCAT	1 cut(s)	613
EcoT38I	GRGCYC	2 cut(s)	476, 748
ErhI	CCWWGG	1 cut(s)	574
FaeI	CATG	9 cut(s)	119, 296, 344, 438, 627, 637, 826, 895, 915
FatI	CATG	9 cut(s)	115, 292, 340, 434, 623, 633, 822, 891, 911
FbaI	TGATCA	1 cut(s)	553
FblI	GTMKAC	1 cut(s)	641
Fnu4HI	GCNGC	1 cut(s)	261
FokI	GGATG	3 cut(s)	175, 256, 451
FriOI	GRGCYC	2 cut(s)	476, 748
Fsp4HI	GCNGC	1 cut(s)	261
FspBI	CTAG	1 cut(s)	836
GlaI	GCGC	1 cut(s)	701
GluI	GCNGC	1 cut(s)	261
GsaI	CCCAGC	1 cut(s)	549
GsuI	CTGGAG	2 cut(s)	32, 732
HaeII	RGCGCY	1 cut(s)	703
HaeIII	GGCC	1 cut(s)	898
HapII	CCGG	4 cut(s)	405, 810, 886, 899
HhaI	GCGC	1 cut(s)	702
Hin1II	CATG	9 cut(s)	119, 296, 344, 438, 627, 637, 826, 895, 915
Hin6I	GCGC	1 cut(s)	700
HinP1I	GCGC	1 cut(s)	700
HincII	GTYRAC	1 cut(s)	385
HindII	GTYRAC	1 cut(s)	385
HinfI	GANTC	2 cut(s)	401, 463
HpaII	CCGG	4 cut(s)	405, 810, 886, 899
HphI	GGTGA	1 cut(s)	160
Hpy166II	GTNNAC	4 cut(s)	275, 358, 385, 642
Hpy188III	TCNNGA	6 cut(s)	196, 293, 341, 405, 616, 772
Hpy8I	GTNNAC	4 cut(s)	275, 358, 385, 642
HpyAV	CCTTC	2 cut(s)	241, 512
HpyCH4III	ACNGT	1 cut(s)	794
HpyCH4IV	ACGT	1 cut(s)	379
HpyCH4V	TGCA	8 cut(s)	62, 99, 275, 611, 627, 882, 909, 918
HpyF10VI	GCNNNNNNNGC	3 cut(s)	661, 832, 915
HpyF3I	CTNAG	5 cut(s)	6, 144, 419, 660, 831
HpySE526I	ACGT	1 cut(s)	379
Hsp92II	CATG	9 cut(s)	119, 296, 344, 438, 627, 637, 826, 895, 915
HspAI	GCGC	1 cut(s)	700
Kpn2I	TCCGGA	1 cut(s)	404
Ksp22I	TGATCA	1 cut(s)	553
Kzo9I	GATC	4 cut(s)	64, 202, 247, 553
LguI	GCTCTTC	1 cut(s)	23
LmnI	GCTCC	6 cut(s)	186, 471, 479, 673, 707, 751
Lsp1109I	GCAGC	1 cut(s)	272
LweI	GCATC	1 cut(s)	198
MaeI	CTAG	1 cut(s)	836
MaeII	ACGT	1 cut(s)	379
MalI	GATC	4 cut(s)	66, 204, 249, 555
MboI	GATC	4 cut(s)	64, 202, 247, 553
MboII	GAAGA	8 cut(s)	40, 184, 298, 314, 476, 485, 579, 794
MflI	RGATCY	2 cut(s)	202, 247
MhlI	GDGCHC	4 cut(s)	277, 446, 476, 748
MluCI	AATT	3 cut(s)	845, 873, 921
MlyI	GAGTC	1 cut(s)	410
MnlI	CCTC	7 cut(s)	9, 16, 149, 229, 348, 664, 847
Mph1103I	ATGCAT	1 cut(s)	613
MroI	TCCGGA	1 cut(s)	404
MseI	TTAA	2 cut(s)	429, 519
MslI	CAYNNNNRTG	1 cut(s)	114
MspI	CCGG	4 cut(s)	405, 810, 886, 899
MspR9I	CCNGG	3 cut(s)	279, 468, 811
Mva1269I	GAATGC	2 cut(s)	33, 611
MvaI	CCWGG	2 cut(s)	279, 468
MwoI	GCNNNNNNNGC	3 cut(s)	661, 832, 915
NciI	CCSGG	1 cut(s)	811
NdeII	GATC	4 cut(s)	64, 202, 247, 553
NlaIII	CATG	9 cut(s)	119, 296, 344, 438, 627, 637, 826, 895, 915
NlaIV	GGNNCC	2 cut(s)	747, 897
NmeAIII	GCCGAG	1 cut(s)	676
NsiI	ATGCAT	1 cut(s)	613
NspI	RCATGY	1 cut(s)	627
PagI	TCATGA	2 cut(s)	292, 340
PciSI	GCTCTTC	1 cut(s)	23
PctI	GAATGC	2 cut(s)	33, 611
PfeI	GAWTC	1 cut(s)	463
PinAI	ACCGGT	1 cut(s)	885
PkrI	GCNGC	1 cut(s)	262
PleI	GAGTC	1 cut(s)	409
PpsI	GAGTC	1 cut(s)	409
Ppu21I	YACGTR	1 cut(s)	380
Psp124BI	GAGCTC	1 cut(s)	476
Psp6I	CCWGG	2 cut(s)	277, 466
PspFI	CCCAGC	1 cut(s)	545
PspGI	CCWGG	2 cut(s)	277, 466
PspN4I	GGNNCC	2 cut(s)	747, 897
PspPI	GGNCC	1 cut(s)	896
PstNI	CAGNNNCTG	1 cut(s)	452
PsuI	RGATCY	2 cut(s)	202, 247
RsaI	GTAC	2 cut(s)	357, 398
RsaNI	GTAC	2 cut(s)	356, 397
RseI	CAYNNNNRTG	1 cut(s)	114
SacI	GAGCTC	1 cut(s)	476
SapI	GCTCTTC	1 cut(s)	23
SaqAI	TTAA	2 cut(s)	429, 519
SatI	GCNGC	1 cut(s)	261
Sau3AI	GATC	4 cut(s)	64, 202, 247, 553
Sau96I	GGNCC	1 cut(s)	896
SchI	GAGTC	1 cut(s)	410
ScrFI	CCNGG	3 cut(s)	279, 468, 811
SduI	GDGCHC	4 cut(s)	277, 446, 476, 748
SfaNI	GCATC	1 cut(s)	198
SfcI	CTRYAG	1 cut(s)	361
SmiMI	CAYNNNNRTG	1 cut(s)	114
Sse9I	AATT	3 cut(s)	845, 873, 921
SsiI	CCGC	1 cut(s)	347
SspI	AATATT	1 cut(s)	712
SspMI	CTAG	1 cut(s)	836
SstI	GAGCTC	1 cut(s)	476
StyD4I	CCNGG	3 cut(s)	277, 466, 809
StyI	CCWWGG	1 cut(s)	574
TaaI	ACNGT	1 cut(s)	794
TaiI	ACGT	1 cut(s)	382
TaqI	TCGA	3 cut(s)	195, 234, 684
TasI	AATT	3 cut(s)	845, 873, 921
TfiI	GAWTC	1 cut(s)	463
Tru1I	TTAA	2 cut(s)	429, 519
Tru9I	TTAA	2 cut(s)	429, 519
TscAI	CASTG	1 cut(s)	457
TseI	GCWGC	1 cut(s)	260
TspDTI	ATGAA	5 cut(s)	104, 179, 357, 555, 880
TspGWI	ACGGA	2 cut(s)	215, 580
TspRI	CASTG	1 cut(s)	457
VneI	GTGCAC	1 cut(s)	273
XceI	RCATGY	1 cut(s)	627
XcmI	CCANNNNNNNNNTGG	1 cut(s)	113
XmiI	GTMKAC	1 cut(s)	641
XspI	CTAG	1 cut(s)	836
Zsp2I	ATGCAT	1 cut(s)	613

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.