Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0007662

Physical Location & Seq

Genomic Coordinates Reverse (-)

27631237 .. 27633211

Gene Structure 1975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g26240.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGCGGCGTACAGATGGAAGTACTTCGAGGAGAACGAAGACCGTCCCGAAAAACCTCGAAGCTATGGCGTCACAGAAATGAGAGGCCCCCATTACTCCCTCTTGAGCCAAAACGTCCTCCAGGATATTTTTGAGTCCATGGGGCAGTTTGTTGATGGTTTGAAGTTTTCTGGAGGTTCCGACAGCTTAATGCCGAAATCGTTTATCAAAGAAGTGACTGATGTTGCTCACCAGCATGATGTATATGTCAGCACCGGCGATTGGGCTGAAAATTTGCTTCGAAAAGGTCCATCGGCTTTCAAAGAGTATGTGGAGGAATGTAAGAGCTTGGGGTTTGACACAATCGAGCTGAATGTGGGATCTCTTGAACTTCCTGAAGAAACTCTTCTGAGATACGTGCGCTTGATTAAGAGCGGTGGTCTGAAAGCAAAGCCACAGTTTGCGGTCAAGTTTAACAAGTCCGACATTCCTGTAGGTGATCGAGCATTTGGAGCCTACGTGGTTCCAAGCCCACGATCATCTGAATTTGTTGAAGATGTTGATCTTCTGATTAGAAGGGCTGAGAGATGCTTAGAGGCTGGGGCCGACATGATAATGATCGACGCTGATGATGTCTGTAAACAAGCTGACTCATTGCGGGCAGACATAATTGCGAAGGTTATCGGGCGTCTGGGGGTTGAGAAGACCATGTTCGAAGCTTCAAATCCAAGAACATCAGAGTGGTTCATCAAACAATATGGTCCAAGGGTGAATCTCTTCGTGGACCACTCCCATGTGATGGATCTCGAGTGCCTCCGGGGACGCAACTTAGGTAAAAATCATGCATCTGTGCTGGGTTCCTCTTATTTTCTGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ComA

Protein Analysis

286

Amino Acids

32.18

Weight (kDa)

5.51

Isoelectric Point (pI)

38.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21320
fragaria_vesca	FvH4_3g02960 FvH4_3g02960 FvH4_3g02980
malus_domestica	MD10G1311200.v1.1
pyrus_communis	pycom05g30710 pycom10g26240
rosa_chinensis	RchiOBHm_Chr5g0004571 RchiOBHm_Chr5g0004601
rosa_laevigata	RLG00000031244
rosa_multiflora	Rmu_co8138828.1_g000001 Rmu_sc0003758.1_g000016
rosa_roxburghii	Rroxscaffold_1G00070950
rosa_rugosa	Rorug02G0363800 Rorug04G0412400
rosa_samantha	Rh5AG040300 Rh5AG040500 Rh5BG039800 Rh5BG040000 Rh5CG043600 Rh5CG043800 Rh5DG039400 Rh5DG039700
rosa_wichuraiana	Rw5G003890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	778
AccBSI	CCGCTC	1 cut(s)	414
AciI	CCGC	4 cut(s)	5, 414, 443, 637
AclWI	GGATC	2 cut(s)	367, 789
AcsI	RAATTY	2 cut(s)	271, 524
AcuI	CTGAAG	1 cut(s)	396
AcyI	GRCGYC	2 cut(s)	69, 667
AfaI	GTAC	2 cut(s)	11, 23
AfiI	CCNNNNNNNGG	2 cut(s)	261, 778
AgsI	TTSAA	5 cut(s)	163, 301, 368, 533, 702
AjnI	CCWGG	1 cut(s)	120
AluBI	AGCT	6 cut(s)	63, 186, 327, 349, 626, 698
AluI	AGCT	6 cut(s)	63, 186, 327, 349, 626, 698
AlwI	GGATC	2 cut(s)	367, 789
Ama87I	CYCGRG	1 cut(s)	785
AoxI	GGCC	2 cut(s)	85, 582
ApoI	RAATTY	2 cut(s)	271, 524
Asp700I	GAANNNNTTC	3 cut(s)	23, 384, 755
AspLEI	GCGC	1 cut(s)	402
AspS9I	GGNCC	5 cut(s)	86, 287, 582, 740, 763
AsuC2I	CCSGG	1 cut(s)	797
AsuHPI	GGTGA	3 cut(s)	221, 488, 760
AsuII	TTCGAA	2 cut(s)	280, 693
AvaI	CYCGRG	1 cut(s)	785
AvaII	GGWCC	3 cut(s)	287, 740, 763
BbsI	GAAGAC	2 cut(s)	45, 689
BccI	CCATC	4 cut(s)	9, 149, 298, 772
BciT130I	CCWGG	1 cut(s)	122
BcnI	CCSGG	1 cut(s)	797
BfmI	CTRYAG	1 cut(s)	471
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
BmcAI	AGTACT	1 cut(s)	23
Bme1390I	CCNGG	2 cut(s)	122, 797
Bme18I	GGWCC	3 cut(s)	287, 740, 763
BmeT110I	CYCGRG	1 cut(s)	785
BmgT120I	GGNCC	5 cut(s)	86, 287, 582, 740, 763
BmiI	GGNNCC	6 cut(s)	88, 178, 493, 504, 583, 838
BmrFI	CCNGG	2 cut(s)	122, 797
BmsI	GCATC	2 cut(s)	557, 833
BpiI	GAAGAC	2 cut(s)	45, 689
BpmI	CTGGAG	2 cut(s)	104, 192
Bpu14I	TTCGAA	2 cut(s)	280, 693
BpuEI	CTTGAG	1 cut(s)	124
BpuMI	CCSGG	1 cut(s)	797
BsaAI	YACGTR	2 cut(s)	397, 499
BsaBI	GATNNNNATC	2 cut(s)	540, 596
BsaHI	GRCGYC	2 cut(s)	69, 667
BsaJI	CCNNGG	3 cut(s)	138, 743, 796
BsaXI	ACNNNNNCTCC	2 cut(s)	483, 513
Bsc4I	CCNNNNNNNGG	2 cut(s)	261, 778
Bse118I	RCCGGY	1 cut(s)	254
Bse3DI	GCAATG	1 cut(s)	632
Bse8I	GATNNNNATC	2 cut(s)	540, 596
BseBI	CCWGG	1 cut(s)	122
BseDI	CCNNGG	3 cut(s)	138, 743, 796
BseJI	GATNNNNATC	2 cut(s)	540, 596
BseLI	CCNNNNNNNGG	2 cut(s)	261, 778
BseMI	GCAATG	1 cut(s)	632
BseMII	CTCAG	2 cut(s)	380, 552
BseRI	GAGGAG	1 cut(s)	44
BseYI	CCCAGC	2 cut(s)	578, 832
BshFI	GGCC	2 cut(s)	87, 584
BsiHKCI	CYCGRG	1 cut(s)	785
BsiSI	CCGG	2 cut(s)	255, 796
BslFI	GGGAC	2 cut(s)	30, 813
BslI	CCNNNNNNNGG	2 cut(s)	261, 778
BsmFI	GGGAC	2 cut(s)	30, 813
BsnI	GGCC	2 cut(s)	87, 584
BsoBI	CYCGRG	1 cut(s)	785
Bsp119I	TTCGAA	2 cut(s)	280, 693
Bsp143I	GATC	6 cut(s)	359, 478, 515, 541, 597, 781
Bsp19I	CCATGG	1 cut(s)	138
BspACI	CCGC	4 cut(s)	5, 414, 443, 637
BspANI	GGCC	2 cut(s)	87, 584
BspCNI	CTCAG	2 cut(s)	381, 553
BspLI	GGNNCC	6 cut(s)	88, 178, 493, 504, 583, 838
BspPI	GGATC	2 cut(s)	367, 789
BspT104I	TTCGAA	2 cut(s)	280, 693
BsrBI	CCGCTC	1 cut(s)	414
BsrDI	GCAATG	1 cut(s)	632
BsrFI	RCCGGY	1 cut(s)	254
BssAI	RCCGGY	1 cut(s)	254
BssECI	CCNNGG	3 cut(s)	138, 743, 796
BssMI	GATC	6 cut(s)	359, 478, 515, 541, 597, 781
BssNI	GRCGYC	2 cut(s)	69, 667
BssT1I	CCWWGG	2 cut(s)	138, 743
Bst2UI	CCWGG	1 cut(s)	122
Bst4CI	ACNGT	2 cut(s)	44, 438
Bst6I	CTCTTC	2 cut(s)	390, 761
BstACI	GRCGYC	2 cut(s)	69, 667
BstBAI	YACGTR	2 cut(s)	397, 499
BstBI	TTCGAA	2 cut(s)	280, 693
BstC8I	GCNNGC	1 cut(s)	639
BstDEI	CTNAG	4 cut(s)	389, 561, 571, 808
BstDSI	CCRYGG	1 cut(s)	138
BstHHI	GCGC	1 cut(s)	402
BstKTI	GATC	6 cut(s)	362, 481, 518, 544, 600, 784
BstMBI	GATC	6 cut(s)	359, 478, 515, 541, 597, 781
BstMWI	GCNNNNNNNGC	1 cut(s)	491
BstNI	CCWGG	1 cut(s)	122
BstSCI	CCNGG	2 cut(s)	120, 795
BstSFI	CTRYAG	1 cut(s)	471
BstV2I	GAAGAC	2 cut(s)	45, 689
BstX2I	RGATCY	2 cut(s)	359, 781
BstYI	RGATCY	2 cut(s)	359, 781
BsuRI	GGCC	2 cut(s)	87, 584
BtgI	CCRYGG	1 cut(s)	138
Cac8I	GCNNGC	1 cut(s)	639
CfoI	GCGC	1 cut(s)	402
Cfr10I	RCCGGY	1 cut(s)	254
Cfr13I	GGNCC	5 cut(s)	86, 287, 582, 740, 763
CseI	GACGC	4 cut(s)	58, 611, 656, 810
Csp6I	GTAC	2 cut(s)	10, 22
CviAII	CATG	6 cut(s)	139, 236, 589, 688, 773, 821
CviQI	GTAC	2 cut(s)	10, 22
DdeI	CTNAG	4 cut(s)	389, 561, 571, 808
DpnI	GATC	6 cut(s)	361, 480, 517, 543, 599, 783
DpnII	GATC	6 cut(s)	359, 478, 515, 541, 597, 781
Eam1104I	CTCTTC	2 cut(s)	390, 761
EarI	CTCTTC	2 cut(s)	390, 761
Eco130I	CCWWGG	2 cut(s)	138, 743
Eco47I	GGWCC	3 cut(s)	287, 740, 763
Eco57I	CTGAAG	1 cut(s)	396
Eco88I	CYCGRG	1 cut(s)	785
EcoO109I	RGGNCCY	1 cut(s)	86
EcoRII	CCWGG	1 cut(s)	120
EcoT14I	CCWWGG	2 cut(s)	138, 743
EcoT22I	ATGCAT	1 cut(s)	826
ErhI	CCWWGG	2 cut(s)	138, 743
FaeI	CATG	6 cut(s)	142, 239, 592, 691, 776, 824
FalI	AAGNNNNNCTT	2 cut(s)	369, 401
FaqI	GGGAC	2 cut(s)	30, 813
FatI	CATG	6 cut(s)	138, 235, 588, 687, 772, 820
FauI	CCCGC	1 cut(s)	630
Fnu4HI	GCNGC	1 cut(s)	6
Fsp4HI	GCNGC	1 cut(s)	6
GlaI	GCGC	1 cut(s)	401
GluI	GCNGC	1 cut(s)	6
GsaI	CCCAGC	2 cut(s)	582, 836
GsuI	CTGGAG	2 cut(s)	104, 192
HaeIII	GGCC	2 cut(s)	87, 584
HapII	CCGG	2 cut(s)	255, 796
HgaI	GACGC	4 cut(s)	58, 611, 656, 810
HhaI	GCGC	1 cut(s)	402
Hin1I	GRCGYC	2 cut(s)	69, 667
Hin1II	CATG	6 cut(s)	142, 239, 592, 691, 776, 824
Hin6I	GCGC	1 cut(s)	400
HinP1I	GCGC	1 cut(s)	400
HindIII	AAGCTT	1 cut(s)	696
HinfI	GANTC	3 cut(s)	134, 629, 751
HpaII	CCGG	2 cut(s)	255, 796
HphI	GGTGA	3 cut(s)	221, 488, 760
Hpy166II	GTNNAC	2 cut(s)	620, 763
Hpy188I	TCNGA	7 cut(s)	181, 390, 423, 463, 523, 549, 718
Hpy188III	TCNNGA	6 cut(s)	47, 103, 171, 365, 374, 785
Hpy8I	GTNNAC	2 cut(s)	620, 763
Hpy99I	CGWCG	1 cut(s)	605
HpyAV	CCTTC	2 cut(s)	549, 649
HpyCH4III	ACNGT	2 cut(s)	44, 438
HpyCH4IV	ACGT	3 cut(s)	114, 396, 498
HpyCH4V	TGCA	1 cut(s)	824
HpyF10VI	GCNNNNNNNGC	1 cut(s)	491
HpyF3I	CTNAG	4 cut(s)	389, 561, 571, 808
HpySE526I	ACGT	3 cut(s)	114, 396, 498
Hsp92I	GRCGYC	2 cut(s)	69, 667
Hsp92II	CATG	6 cut(s)	142, 239, 592, 691, 776, 824
HspAI	GCGC	1 cut(s)	400
Kzo9I	GATC	6 cut(s)	359, 478, 515, 541, 597, 781
LmnI	GCTCC	1 cut(s)	491
LweI	GCATC	2 cut(s)	557, 833
MaeII	ACGT	3 cut(s)	114, 396, 498
MaeIII	GTNAC	2 cut(s)	70, 214
MalI	GATC	6 cut(s)	361, 480, 517, 543, 599, 783
MbiI	CCGCTC	1 cut(s)	414
MboI	GATC	6 cut(s)	359, 478, 515, 541, 597, 781
MboII	GAAGA	7 cut(s)	50, 377, 389, 536, 545, 694, 748
MflI	RGATCY	2 cut(s)	359, 781
MluCI	AATT	3 cut(s)	271, 524, 648
MlyI	GAGTC	2 cut(s)	143, 623
MmeI	TCCRAC	2 cut(s)	204, 486
Mph1103I	ATGCAT	1 cut(s)	826
MroXI	GAANNNNTTC	3 cut(s)	23, 384, 755
MseI	TTAA	4 cut(s)	188, 408, 453, 856
MslI	CAYNNNNRTG	5 cut(s)	77, 234, 593, 718, 771
MspI	CCGG	2 cut(s)	255, 796
MspR9I	CCNGG	2 cut(s)	122, 797
MvaI	CCWGG	1 cut(s)	122
MwoI	GCNNNNNNNGC	1 cut(s)	491
NciI	CCSGG	1 cut(s)	797
NcoI	CCATGG	1 cut(s)	138
NdeII	GATC	6 cut(s)	359, 478, 515, 541, 597, 781
NlaIII	CATG	6 cut(s)	142, 239, 592, 691, 776, 824
NlaIV	GGNNCC	6 cut(s)	88, 178, 493, 504, 583, 838
NmuCI	GTSAC	2 cut(s)	70, 214
NsiI	ATGCAT	1 cut(s)	826
NspV	TTCGAA	2 cut(s)	280, 693
PaeR7I	CTCGAG	1 cut(s)	785
PcsI	WCGNNNNNNNCGW	1 cut(s)	33
PdmI	GAANNNNTTC	3 cut(s)	23, 384, 755
PfeI	GAWTC	1 cut(s)	751
PflMI	CCANNNNNTGG	1 cut(s)	778
PfoI	TCCNGGA	1 cut(s)	120
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	2 cut(s)	142, 623
PpsI	GAGTC	2 cut(s)	142, 623
Ppu21I	YACGTR	2 cut(s)	397, 499
Psp6I	CCWGG	1 cut(s)	120
PspFI	CCCAGC	2 cut(s)	578, 832
PspGI	CCWGG	1 cut(s)	120
PspN4I	GGNNCC	6 cut(s)	88, 178, 493, 504, 583, 838
PspPI	GGNCC	5 cut(s)	86, 287, 582, 740, 763
PsuI	RGATCY	2 cut(s)	359, 781
RsaI	GTAC	2 cut(s)	11, 23
RsaNI	GTAC	2 cut(s)	10, 22
RseI	CAYNNNNRTG	5 cut(s)	77, 234, 593, 718, 771
SaqAI	TTAA	4 cut(s)	188, 408, 453, 856
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	6 cut(s)	359, 478, 515, 541, 597, 781
Sau96I	GGNCC	5 cut(s)	86, 287, 582, 740, 763
ScaI	AGTACT	1 cut(s)	23
SchI	GAGTC	2 cut(s)	143, 623
ScrFI	CCNGG	2 cut(s)	122, 797
SfaNI	GCATC	2 cut(s)	557, 833
SfcI	CTRYAG	1 cut(s)	471
Sfr274I	CTCGAG	1 cut(s)	785
SfuI	TTCGAA	2 cut(s)	280, 693
SgrAI	CRCCGGYG	1 cut(s)	254
SinI	GGWCC	3 cut(s)	287, 740, 763
SlaI	CTCGAG	1 cut(s)	785
SmiMI	CAYNNNNRTG	5 cut(s)	77, 234, 593, 718, 771
SmlI	CTYRAG	2 cut(s)	103, 785
SmoI	CTYRAG	2 cut(s)	103, 785
Sse9I	AATT	3 cut(s)	271, 524, 648
SsiI	CCGC	4 cut(s)	5, 414, 443, 637
StyD4I	CCNGG	2 cut(s)	120, 795
StyI	CCWWGG	2 cut(s)	138, 743
TaaI	ACNGT	2 cut(s)	44, 438
TaiI	ACGT	3 cut(s)	117, 399, 501
TaqI	TCGA	8 cut(s)	27, 58, 280, 345, 481, 600, 693, 786
TasI	AATT	3 cut(s)	271, 524, 648
TatI	WGTACW	1 cut(s)	21
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	751
Tru1I	TTAA	4 cut(s)	188, 408, 453, 856
Tru9I	TTAA	4 cut(s)	188, 408, 453, 856
TseFI	GTSAC	2 cut(s)	70, 214
Tsp45I	GTSAC	2 cut(s)	70, 214
TspDTI	ATGAA	1 cut(s)	715
Van91I	CCANNNNNTGG	1 cut(s)	778
VpaK11BI	GGWCC	3 cut(s)	287, 740, 763
XapI	RAATTY	2 cut(s)	271, 524
XhoI	CTCGAG	1 cut(s)	785
XmnI	GAANNNNTTC	3 cut(s)	23, 384, 755
ZrmI	AGTACT	1 cut(s)	23
Zsp2I	ATGCAT	1 cut(s)	826

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.