Rh5AG040300

(2R)-phospho-3-sulfolactate synthase (ComA)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0007662
Physical Location & Seq
Forward (+)
3018607 .. 3024040
5434 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG040300.1

Sequence Viewer

Length: 339 bp
ATGCCAAAGCCGTTTGTGAAAGAGGTGATTGATATGGAGTGTAAGAGCTTGGGATTTGACTCGATTGAGCTGAATGTGGGATCTCTCGGAGTGCCTGCTGAGGAAACGCTTCTGAGACTTGTGCGCTTGATTAAGAGCGGTGGCTTGAAAGTGAAGCCTCTGTTTGAAGTCATGGTTCACGAGTCTGACATTCCGATCCTATTGGTGATAGAGCTTTTGGAGCCTATGTCGTCTCGAGACCAAGATCATCTGGTTGATAATACTTTGTTGAGAGTGCTCTTATCCAAGATGGAGATCGAGTTGGTACAAATGTACAATCACAATCACTTGTATAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ComA

Protein Analysis

112

Amino Acids

12.74

Weight (kDa)

5.11

Isoelectric Point (pI)

60.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ComA PF02679 13 - 73 1.7e-06 (2R)-phospho-3-sulfolactate synthase (ComA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 138
AciI CCGC 1 cut(s) 138
AclWI GGATC 2 cut(s) 88, 190
AfaI GTAC 2 cut(s) 306, 314
AgsI TTSAA 2 cut(s) 148, 167
AluBI AGCT 3 cut(s) 48, 70, 214
AluI AGCT 3 cut(s) 48, 70, 214
Alw21I GWGCWC 1 cut(s) 279
Alw26I GTCTC 3 cut(s) 109, 231, 237
AlwI GGATC 2 cut(s) 88, 190
Ama87I CYCGRG 1 cut(s) 234
Asp700I GAANNNNTTC 1 cut(s) 108
AspLEI GCGC 1 cut(s) 126
AsuHPI GGTGA 2 cut(s) 37, 217
AvaI CYCGRG 1 cut(s) 234
BaeI ACNNNNGTAYC 2 cut(s) 296, 329
BauI CACGAG 1 cut(s) 179
Bbv12I GWGCWC 1 cut(s) 279
BbvCI CCTCAGC 1 cut(s) 99
BccI CCATC 1 cut(s) 283
BcoDI GTCTC 3 cut(s) 109, 231, 237
BmeT110I CYCGRG 1 cut(s) 234
BmiI GGNNCC 1 cut(s) 222
Bpu10I CCTNAGC 1 cut(s) 99
BsaBI GATNNNNATC 1 cut(s) 293
BsaI GGTCTC 1 cut(s) 231
BsaXI ACNNNNNCTCC 4 cut(s) 212, 242, 284, 314
Bse8I GATNNNNATC 1 cut(s) 293
BseJI GATNNNNATC 1 cut(s) 293
BseMII CTCAG 2 cut(s) 90, 104
BsiHKAI GWGCWC 1 cut(s) 279
BsiHKCI CYCGRG 1 cut(s) 234
BsmAI GTCTC 3 cut(s) 109, 231, 237
BsmBI CGTCTC 1 cut(s) 237
Bso31I GGTCTC 1 cut(s) 231
BsoBI CYCGRG 1 cut(s) 234
Bsp1286I GDGCHC 1 cut(s) 279
Bsp1407I TGTACA 1 cut(s) 312
Bsp143I GATC 4 cut(s) 80, 195, 244, 294
BspACI CCGC 1 cut(s) 138
BspCNI CTCAG 2 cut(s) 91, 105
BspLI GGNNCC 1 cut(s) 222
BspPI GGATC 2 cut(s) 88, 190
BspTNI GGTCTC 1 cut(s) 231
BsrBI CCGCTC 1 cut(s) 138
BsrGI TGTACA 1 cut(s) 312
BssMI GATC 4 cut(s) 80, 195, 244, 294
BssSI CACGAG 1 cut(s) 179
Bst2BI CACGAG 1 cut(s) 179
BstAUI TGTACA 1 cut(s) 312
BstC8I GCNNGC 1 cut(s) 96
BstDEI CTNAG 2 cut(s) 99, 113
BstHHI GCGC 1 cut(s) 126
BstKTI GATC 4 cut(s) 83, 198, 247, 297
BstMAI GTCTC 3 cut(s) 109, 231, 237
BstMBI GATC 4 cut(s) 80, 195, 244, 294
BstMWI GCNNNNNNNGC 1 cut(s) 220
BstX2I RGATCY 1 cut(s) 80
BstYI RGATCY 1 cut(s) 80
Cac8I GCNNGC 1 cut(s) 96
CfoI GCGC 1 cut(s) 126
Csp6I GTAC 2 cut(s) 305, 313
CviAII CATG 1 cut(s) 172
CviJI RGCY 7 cut(s) 10, 48, 70, 144, 157, 214, 223
CviKI_1 RGCY 7 cut(s) 10, 48, 70, 144, 157, 214, 223
CviQI GTAC 2 cut(s) 305, 313
DdeI CTNAG 2 cut(s) 99, 113
DpnI GATC 4 cut(s) 82, 197, 246, 296
DpnII GATC 4 cut(s) 80, 195, 244, 294
Eco31I GGTCTC 1 cut(s) 231
Eco88I CYCGRG 1 cut(s) 234
Esp3I CGTCTC 1 cut(s) 237
FaeI CATG 1 cut(s) 175
FaiI YATR 4 cut(s) 35, 173, 227, 333
FatI CATG 1 cut(s) 171
GlaI GCGC 1 cut(s) 125
HhaI GCGC 1 cut(s) 126
Hin1II CATG 1 cut(s) 175
Hin6I GCGC 1 cut(s) 124
HinP1I GCGC 1 cut(s) 124
HinfI GANTC 2 cut(s) 59, 182
HphI GGTGA 2 cut(s) 37, 217
Hpy166II GTNNAC 1 cut(s) 178
Hpy188I TCNGA 4 cut(s) 89, 114, 187, 195
Hpy188III TCNNGA 3 cut(s) 179, 234, 236
Hpy8I GTNNAC 1 cut(s) 178
HpyF10VI GCNNNNNNNGC 1 cut(s) 220
HpyF3I CTNAG 2 cut(s) 99, 113
Hsp92II CATG 1 cut(s) 175
HspAI GCGC 1 cut(s) 124
Kzo9I GATC 4 cut(s) 80, 195, 244, 294
LmnI GCTCC 1 cut(s) 220
LpnPI CCDG 2 cut(s) 108, 236
MalI GATC 4 cut(s) 82, 197, 246, 296
MbiI CCGCTC 1 cut(s) 138
MboI GATC 4 cut(s) 80, 195, 244, 294
MflI RGATCY 1 cut(s) 80
MhlI GDGCHC 1 cut(s) 279
MlyI GAGTC 2 cut(s) 53, 191
MnlI CCTC 3 cut(s) 16, 94, 168
MroXI GAANNNNTTC 1 cut(s) 108
MseI TTAA 1 cut(s) 132
MwoI GCNNNNNNNGC 1 cut(s) 220
NdeII GATC 4 cut(s) 80, 195, 244, 294
NlaIII CATG 1 cut(s) 175
NlaIV GGNNCC 1 cut(s) 222
PaeR7I CTCGAG 1 cut(s) 234
PdmI GAANNNNTTC 1 cut(s) 108
PleI GAGTC 2 cut(s) 53, 190
PpsI GAGTC 2 cut(s) 53, 190
PspN4I GGNNCC 1 cut(s) 222
PsuI RGATCY 1 cut(s) 80
RsaI GTAC 2 cut(s) 306, 314
RsaNI GTAC 2 cut(s) 305, 313
SaqAI TTAA 1 cut(s) 132
Sau3AI GATC 4 cut(s) 80, 195, 244, 294
SchI GAGTC 2 cut(s) 53, 191
SduI GDGCHC 1 cut(s) 279
SetI ASST 4 cut(s) 27, 50, 72, 216
Sfr274I CTCGAG 1 cut(s) 234
SlaI CTCGAG 1 cut(s) 234
SmlI CTYRAG 1 cut(s) 234
SmoI CTYRAG 1 cut(s) 234
SsiI CCGC 1 cut(s) 138
TaqI TCGA 3 cut(s) 62, 235, 297
TatI WGTACW 1 cut(s) 312
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
XhoI CTCGAG 1 cut(s) 234
XmnI GAANNNNTTC 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.