Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8138828.1

Orthogroup ID

OG0007662

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 508

Gene Structure 508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8138828.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 385 bp

atgggggacattgtggatgggctcaagtttgctggaggttcgcatagcttgatgcccaagtcgtttgttaaagaggtgattgatgtggctcaccaacatgacgtgtatgtaagcactggtgattgggctgagaatttacttcgaaaaggcccttcggcttttaaagagtatgtggaggagtgtaagagcttgggatttgacacaattgagctgaatgtgggatctctcggagtgcctgaggaaacgcttctgagacttgtgcgcttgattaagagcggtggcttgaaggtgaagcctctgtttgaagtcaaggttaacgagtctgacattcctattggtgatagagcatttggagcctatgtcgtgccgagaccaagatcatctg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ComA

Protein Analysis

128

Amino Acids

14.0

Weight (kDa)

5.91

Isoelectric Point (pI)

29.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21320
fragaria_vesca	FvH4_3g02960 FvH4_3g02960 FvH4_3g02980
malus_domestica	MD10G1311200.v1.1
pyrus_communis	pycom05g30710 pycom10g26240
rosa_chinensis	RchiOBHm_Chr5g0004571 RchiOBHm_Chr5g0004601
rosa_laevigata	RLG00000031244
rosa_multiflora	Rmu_co8138828.1_g000001 Rmu_sc0003758.1_g000016
rosa_roxburghii	Rroxscaffold_1G00070950
rosa_rugosa	Rorug02G0363800 Rorug04G0412400
rosa_samantha	Rh5AG040300 Rh5AG040500 Rh5BG039800 Rh5BG040000 Rh5CG043600 Rh5CG043800 Rh5DG039400 Rh5DG039700
rosa_wichuraiana	Rw5G003890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	276
AciI	CCGC	1 cut(s)	276
AclWI	GGATC	1 cut(s)	229
AcsI	RAATTY	1 cut(s)	133
AflIII	ACRYGT	1 cut(s)	102
AgsI	TTSAA	2 cut(s)	286, 305
AjiI	CACGTC	1 cut(s)	103
AluBI	AGCT	3 cut(s)	48, 189, 211
AluI	AGCT	3 cut(s)	48, 189, 211
Alw26I	GTCTC	2 cut(s)	247, 364
AlwI	GGATC	1 cut(s)	229
AoxI	GGCC	1 cut(s)	148
ApoI	RAATTY	1 cut(s)	133
Asp700I	GAANNNNTTC	1 cut(s)	246
AspLEI	GCGC	1 cut(s)	264
AspS9I	GGNCC	1 cut(s)	149
AsuHPI	GGTGA	5 cut(s)	83, 88, 131, 301, 350
AsuII	TTCGAA	1 cut(s)	142
AxyI	CCTNAGG	1 cut(s)	237
BanII	GRGCYC	1 cut(s)	24
BccI	CCATC	1 cut(s)	11
BcoDI	GTCTC	2 cut(s)	247, 364
BmgBI	CACGTC	1 cut(s)	103
BmgT120I	GGNCC	1 cut(s)	149
BmiI	GGNNCC	1 cut(s)	355
BmsI	GCATC	1 cut(s)	42
BpmI	CTGGAG	1 cut(s)	54
Bpu14I	TTCGAA	1 cut(s)	142
BpuEI	CTTGAG	1 cut(s)	8
BsaI	GGTCTC	1 cut(s)	364
BsaXI	ACNNNNNCTCC	2 cut(s)	345, 375
Bse1I	ACTGG	1 cut(s)	121
Bse21I	CCTNAGG	1 cut(s)	237
BseGI	GGATG	1 cut(s)	22
BseMII	CTCAG	3 cut(s)	120, 228, 242
BseNI	ACTGG	1 cut(s)	121
BseRI	GAGGAG	1 cut(s)	191
BshFI	GGCC	1 cut(s)	150
BslFI	GGGAC	1 cut(s)	20
BsmAI	GTCTC	2 cut(s)	247, 364
BsmFI	GGGAC	1 cut(s)	20
BsnI	GGCC	1 cut(s)	150
Bso31I	GGTCTC	1 cut(s)	364
Bsp119I	TTCGAA	1 cut(s)	142
Bsp1286I	GDGCHC	1 cut(s)	24
Bsp143I	GATC	2 cut(s)	221, 377
BspACI	CCGC	1 cut(s)	276
BspANI	GGCC	1 cut(s)	150
BspCNI	CTCAG	3 cut(s)	121, 229, 243
BspLI	GGNNCC	1 cut(s)	355
BspPI	GGATC	1 cut(s)	229
BspT104I	TTCGAA	1 cut(s)	142
BspTNI	GGTCTC	1 cut(s)	364
BsrBI	CCGCTC	1 cut(s)	276
BsrI	ACTGG	1 cut(s)	121
BssMI	GATC	2 cut(s)	221, 377
BstBI	TTCGAA	1 cut(s)	142
BstDEI	CTNAG	3 cut(s)	129, 237, 251
BstF5I	GGATG	1 cut(s)	22
BstHHI	GCGC	1 cut(s)	264
BstKTI	GATC	2 cut(s)	224, 380
BstMAI	GTCTC	2 cut(s)	247, 364
BstMBI	GATC	2 cut(s)	221, 377
BstMWI	GCNNNNNNNGC	1 cut(s)	353
BstX2I	RGATCY	1 cut(s)	221
BstYI	RGATCY	1 cut(s)	221
Bsu36I	CCTNAGG	1 cut(s)	237
BsuRI	GGCC	1 cut(s)	150
BtrI	CACGTC	1 cut(s)	103
BtsCI	GGATG	1 cut(s)	22
BtsIMutI	CAGTG	1 cut(s)	114
CfoI	GCGC	1 cut(s)	264
Cfr13I	GGNCC	1 cut(s)	149
CviAII	CATG	1 cut(s)	98
DdeI	CTNAG	3 cut(s)	129, 237, 251
DpnI	GATC	2 cut(s)	223, 379
DpnII	GATC	2 cut(s)	221, 377
DraI	TTTAAA	1 cut(s)	163
Eco24I	GRGCYC	1 cut(s)	24
Eco31I	GGTCTC	1 cut(s)	364
Eco81I	CCTNAGG	1 cut(s)	237
EcoO109I	RGGNCCY	1 cut(s)	149
EcoT38I	GRGCYC	1 cut(s)	24
FaeI	CATG	1 cut(s)	101
FaiI	YATR	5 cut(s)	45, 99, 108, 171, 360
FaqI	GGGAC	1 cut(s)	20
FatI	CATG	1 cut(s)	97
FokI	GGATG	1 cut(s)	29
FriOI	GRGCYC	1 cut(s)	24
GlaI	GCGC	1 cut(s)	263
GsuI	CTGGAG	1 cut(s)	54
HaeIII	GGCC	1 cut(s)	150
HhaI	GCGC	1 cut(s)	264
Hin1II	CATG	1 cut(s)	101
Hin6I	GCGC	1 cut(s)	262
HinP1I	GCGC	1 cut(s)	262
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HinfI	GANTC	1 cut(s)	320
HpaI	GTTAAC	1 cut(s)	316
HphI	GGTGA	5 cut(s)	83, 88, 131, 301, 350
Hpy166II	GTNNAC	1 cut(s)	316
Hpy188I	TCNGA	3 cut(s)	230, 252, 325
Hpy8I	GTNNAC	1 cut(s)	316
HpyAV	CCTTC	2 cut(s)	162, 280
HpyCH4IV	ACGT	1 cut(s)	102
HpyF10VI	GCNNNNNNNGC	1 cut(s)	353
HpyF3I	CTNAG	3 cut(s)	129, 237, 251
HpySE526I	ACGT	1 cut(s)	102
Hsp92II	CATG	1 cut(s)	101
HspAI	GCGC	1 cut(s)	262
KspAI	GTTAAC	1 cut(s)	316
Kzo9I	GATC	2 cut(s)	221, 377
LmnI	GCTCC	1 cut(s)	353
LpnPI	CCDG	3 cut(s)	18, 102, 249
LweI	GCATC	1 cut(s)	42
MaeII	ACGT	1 cut(s)	102
MalI	GATC	2 cut(s)	223, 379
MbiI	CCGCTC	1 cut(s)	276
MboI	GATC	2 cut(s)	221, 377
MfeI	CAATTG	1 cut(s)	204
MflI	RGATCY	1 cut(s)	221
MhlI	GDGCHC	1 cut(s)	24
MluCI	AATT	2 cut(s)	133, 204
MlyI	GAGTC	1 cut(s)	329
MnlI	CCTC	5 cut(s)	29, 67, 169, 232, 306
MroXI	GAANNNNTTC	1 cut(s)	246
MseI	TTAA	4 cut(s)	69, 162, 270, 315
MslI	CAYNNNNRTG	1 cut(s)	96
MunI	CAATTG	1 cut(s)	204
MwoI	GCNNNNNNNGC	1 cut(s)	353
NdeII	GATC	2 cut(s)	221, 377
NlaIII	CATG	1 cut(s)	101
NlaIV	GGNNCC	1 cut(s)	355
NspV	TTCGAA	1 cut(s)	142
PdmI	GAANNNNTTC	1 cut(s)	246
PleI	GAGTC	1 cut(s)	328
PpsI	GAGTC	1 cut(s)	328
PspN4I	GGNNCC	1 cut(s)	355
PspPI	GGNCC	1 cut(s)	149
PsuI	RGATCY	1 cut(s)	221
RseI	CAYNNNNRTG	1 cut(s)	96
SaqAI	TTAA	4 cut(s)	69, 162, 270, 315
Sau3AI	GATC	2 cut(s)	221, 377
Sau96I	GGNCC	1 cut(s)	149
SchI	GAGTC	1 cut(s)	329
SduI	GDGCHC	1 cut(s)	24
SetI	ASST	8 cut(s)	40, 50, 78, 105, 191, 213, 291, 315
SfaNI	GCATC	1 cut(s)	42
SfuI	TTCGAA	1 cut(s)	142
SmiMI	CAYNNNNRTG	1 cut(s)	96
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
Sse9I	AATT	2 cut(s)	133, 204
SsiI	CCGC	1 cut(s)	276
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	1 cut(s)	142
TasI	AATT	2 cut(s)	133, 204
Tru1I	TTAA	4 cut(s)	69, 162, 270, 315
Tru9I	TTAA	4 cut(s)	69, 162, 270, 315
TscAI	CASTG	1 cut(s)	121
TspRI	CASTG	1 cut(s)	121
XapI	RAATTY	1 cut(s)	133
XmnI	GAANNNNTTC	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.