Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003758.1

Orthogroup ID

OG0007662

Physical Location & Seq

Genomic Coordinates Forward (+)

63592 .. 66849

Gene Structure 3258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003758.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

atgtcggcgtaccgatggaagtcctttcacgagaacgaggaccggccggagaagcctcgccggtacggcgtcacagaaatgagaggccccaatcacactctcttgacccaaaacgtccttcaggatattttcgagtcgatgggggacattgtggatgggctcaagtttgctggaggttcgcatagcttgatgcccaagtcgtttgttaaagaggtgattgatgtggctcaccaacatgacgtgtatgtaagcactggtgattgggctgagaatttacttcgaaaaggcccttcggcttttaaagagtatgtggaggagtgtaagagcttgggatttgacacaattgagctgaatgtgggatctctcggagtgcctgaggaaacgcttctgagacttgtgcgcttgattaagagcggtggcttgaaggtgaagcctctgtttgaagtcaaggttaacgagtctgacattcctattggtgatagagcatttggagcctatgtcgtgccgagaccaagatcatctgaatttgttgaagatgttgatctgttgattagaagggctgagagatgcttagaagctggggctgacatgataatgattgaggctgatgatgtctgtaaacaggctgattcaatgaggccagacataattgcaaaggtcattgggcgccttggtgtcgagaagaccatgtttgaagcatcaaatccaagaacctcggagtggttcatccagcattatggtccaagggtcaacctgtttgtggaccactctcatgtgatggacctggagtgcctccggggacgcaacttaggcattaccataagaaggcaaggcctccgagcactagcaaatagtacaagatggcatgggggttctcgaaaaggcagtggtaataaatccacaaggtcaagtattccctcagatttatccgccgctaagacatcttcaatgtcaagagtaccgtcggagttcttagatgacacattagaatatatttatgataacactgggtctagttgtgatgatatagtgctagaagtgcgagatctagaagatcgtttccgtcaacgtctcgaggtgtgccggtctcactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ComA

Protein Analysis

364

Amino Acids

41.07

Weight (kDa)

5.99

Isoelectric Point (pI)

44.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21320
fragaria_vesca	FvH4_3g02960 FvH4_3g02960 FvH4_3g02980
malus_domestica	MD10G1311200.v1.1
pyrus_communis	pycom05g30710 pycom10g26240
rosa_chinensis	RchiOBHm_Chr5g0004571 RchiOBHm_Chr5g0004601
rosa_laevigata	RLG00000031244
rosa_multiflora	Rmu_co8138828.1_g000001 Rmu_sc0003758.1_g000016
rosa_roxburghii	Rroxscaffold_1G00070950
rosa_rugosa	Rorug02G0363800 Rorug04G0412400
rosa_samantha	Rh5AG040300 Rh5AG040500 Rh5BG039800 Rh5BG040000 Rh5CG043600 Rh5CG043800 Rh5DG039400 Rh5DG039700
rosa_wichuraiana	Rw5G003890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	666
AccBSI	CCGCTC	1 cut(s)	414
AciI	CCGC	3 cut(s)	414, 930, 933
AclWI	GGATC	1 cut(s)	367
AcoI	YGGCCR	1 cut(s)	44
AcsI	RAATTY	2 cut(s)	271, 524
AcuI	CTGAAG	1 cut(s)	104
AcyI	GRCGYC	2 cut(s)	69, 667
AfaI	GTAC	4 cut(s)	11, 65, 856, 960
AfiI	CCNNNNNNNGG	3 cut(s)	720, 760, 825
AflIII	ACRYGT	1 cut(s)	240
AgsI	TTSAA	6 cut(s)	424, 443, 533, 633, 695, 948
AjiI	CACGTC	1 cut(s)	241
AjnI	CCWGG	1 cut(s)	783
AjuI	GAANNNNNNNTTGG	2 cut(s)	102, 134
AluBI	AGCT	4 cut(s)	186, 327, 349, 578
AluI	AGCT	4 cut(s)	186, 327, 349, 578
Alw21I	GWGCWC	1 cut(s)	844
Alw26I	GTCTC	3 cut(s)	385, 502, 1076
AlwI	GGATC	1 cut(s)	367
Ama87I	CYCGRG	1 cut(s)	1073
AoxI	GGCC	5 cut(s)	44, 85, 286, 638, 832
ApoI	RAATTY	2 cut(s)	271, 524
Asp700I	GAANNNNTTC	1 cut(s)	384
AspLEI	GCGC	2 cut(s)	402, 669
AspS9I	GGNCC	6 cut(s)	40, 86, 287, 740, 763, 781
AsuC2I	CCSGG	1 cut(s)	797
AsuHPI	GGTGA	5 cut(s)	221, 226, 269, 439, 488
AsuII	TTCGAA	1 cut(s)	280
AvaI	CYCGRG	1 cut(s)	1073
AvaII	GGWCC	4 cut(s)	40, 740, 763, 781
AxyI	CCTNAGG	1 cut(s)	375
BanI	GGYRCC	1 cut(s)	666
BanII	GRGCYC	1 cut(s)	162
BauI	CACGAG	1 cut(s)	29
BbsI	GAAGAC	1 cut(s)	689
Bbv12I	GWGCWC	1 cut(s)	844
BccI	CCATC	5 cut(s)	9, 133, 149, 772, 855
BceAI	ACGGC	1 cut(s)	82
BciT130I	CCWGG	1 cut(s)	785
BcnI	CCSGG	1 cut(s)	797
BcoDI	GTCTC	3 cut(s)	385, 502, 1076
BfaI	CTAG	4 cut(s)	845, 1014, 1034, 1049
BfoI	RGCGCY	1 cut(s)	670
BglI	GCCNNNNNGGC	1 cut(s)	66
BglII	AGATCT	1 cut(s)	1045
BisI	GCNGC	1 cut(s)	933
BlsI	GCNGC	1 cut(s)	934
Bme1390I	CCNGG	2 cut(s)	785, 797
Bme18I	GGWCC	4 cut(s)	40, 740, 763, 781
BmeT110I	CYCGRG	1 cut(s)	1073
BmgBI	CACGTC	1 cut(s)	241
BmgT120I	GGNCC	6 cut(s)	40, 86, 287, 740, 763, 781
BmiI	GGNNCC	3 cut(s)	88, 493, 668
BmrFI	CCNGG	2 cut(s)	785, 797
BmrI	ACTGGG	1 cut(s)	1017
BmsI	GCATC	3 cut(s)	180, 557, 707
BmuI	ACTGGG	1 cut(s)	1017
BpiI	GAAGAC	1 cut(s)	689
BpmI	CTGGAG	2 cut(s)	192, 806
Bpu14I	TTCGAA	1 cut(s)	280
BpuEI	CTTGAG	1 cut(s)	146
BpuMI	CCSGG	1 cut(s)	797
BsaBI	GATNNNNATC	1 cut(s)	540
BsaHI	GRCGYC	2 cut(s)	69, 667
BsaI	GGTCTC	1 cut(s)	502
BsaJI	CCNNGG	4 cut(s)	670, 714, 743, 796
BsaXI	ACNNNNNCTCC	2 cut(s)	483, 513
Bsc4I	CCNNNNNNNGG	3 cut(s)	720, 760, 825
Bse118I	RCCGGY	3 cut(s)	42, 60, 1083
Bse1I	ACTGG	2 cut(s)	259, 1012
Bse21I	CCTNAGG	1 cut(s)	375
Bse8I	GATNNNNATC	1 cut(s)	540
BseBI	CCWGG	1 cut(s)	785
BseDI	CCNNGG	4 cut(s)	670, 714, 743, 796
BseGI	GGATG	2 cut(s)	160, 726
BseJI	GATNNNNATC	1 cut(s)	540
BseLI	CCNNNNNNNGG	3 cut(s)	720, 760, 825
BseMII	CTCAG	5 cut(s)	258, 366, 380, 552, 933
BseNI	ACTGG	2 cut(s)	259, 1012
BseRI	GAGGAG	1 cut(s)	329
BseX3I	CGGCCG	1 cut(s)	44
BseYI	CCCAGC	1 cut(s)	578
Bsh1285I	CGRYCG	1 cut(s)	47
BshFI	GGCC	5 cut(s)	46, 87, 288, 640, 834
BshNI	GGYRCC	1 cut(s)	666
BsiEI	CGRYCG	1 cut(s)	47
BsiHKAI	GWGCWC	1 cut(s)	844
BsiHKCI	CYCGRG	1 cut(s)	1073
BsiSI	CCGG	5 cut(s)	43, 47, 61, 796, 1084
BslFI	GGGAC	2 cut(s)	158, 813
BslI	CCNNNNNNNGG	3 cut(s)	720, 760, 825
BsmAI	GTCTC	3 cut(s)	385, 502, 1076
BsmBI	CGTCTC	1 cut(s)	1076
BsmFI	GGGAC	2 cut(s)	158, 813
BsnI	GGCC	5 cut(s)	46, 87, 288, 640, 834
Bso31I	GGTCTC	1 cut(s)	502
BsoBI	CYCGRG	1 cut(s)	1073
Bsp119I	TTCGAA	1 cut(s)	280
Bsp1286I	GDGCHC	2 cut(s)	162, 844
Bsp143I	GATC	5 cut(s)	359, 515, 541, 1045, 1054
BspACI	CCGC	3 cut(s)	414, 930, 933
BspANI	GGCC	5 cut(s)	46, 87, 288, 640, 834
BspCNI	CTCAG	5 cut(s)	259, 367, 381, 553, 932
BspLI	GGNNCC	3 cut(s)	88, 493, 668
BspPI	GGATC	1 cut(s)	367
BspT104I	TTCGAA	1 cut(s)	280
BspT107I	GGYRCC	1 cut(s)	666
BspTNI	GGTCTC	1 cut(s)	502
BsrBI	CCGCTC	1 cut(s)	414
BsrFI	RCCGGY	3 cut(s)	42, 60, 1083
BsrI	ACTGG	2 cut(s)	259, 1012
BssAI	RCCGGY	3 cut(s)	42, 60, 1083
BssECI	CCNNGG	4 cut(s)	670, 714, 743, 796
BssMI	GATC	5 cut(s)	359, 515, 541, 1045, 1054
BssNI	GRCGYC	2 cut(s)	69, 667
BssSI	CACGAG	1 cut(s)	29
BssT1I	CCWWGG	2 cut(s)	670, 743
Bst2BI	CACGAG	1 cut(s)	29
Bst2UI	CCWGG	1 cut(s)	785
Bst4CI	ACNGT	1 cut(s)	963
BstACI	GRCGYC	2 cut(s)	69, 667
BstBI	TTCGAA	1 cut(s)	280
BstDEI	CTNAG	9 cut(s)	267, 375, 389, 561, 571, 808, 919, 936, 973
BstF5I	GGATG	2 cut(s)	160, 726
BstH2I	RGCGCY	1 cut(s)	670
BstHHI	GCGC	2 cut(s)	402, 669
BstKTI	GATC	5 cut(s)	362, 518, 544, 1048, 1057
BstMAI	GTCTC	3 cut(s)	385, 502, 1076
BstMBI	GATC	5 cut(s)	359, 515, 541, 1045, 1054
BstMCI	CGRYCG	1 cut(s)	47
BstMWI	GCNNNNNNNGC	5 cut(s)	52, 66, 491, 810, 1039
BstNI	CCWGG	1 cut(s)	785
BstSCI	CCNGG	2 cut(s)	783, 795
BstV2I	GAAGAC	1 cut(s)	689
BstX2I	RGATCY	2 cut(s)	359, 1045
BstXI	CCANNNNNNTGG	1 cut(s)	737
BstYI	RGATCY	2 cut(s)	359, 1045
BstZI	CGGCCG	1 cut(s)	44
Bsu36I	CCTNAGG	1 cut(s)	375
BsuRI	GGCC	5 cut(s)	46, 87, 288, 640, 834
BtrI	CACGTC	1 cut(s)	241
BtsCI	GGATG	2 cut(s)	160, 726
BtsI	GCAGTG	1 cut(s)	892
BtsIMutI	CAGTG	4 cut(s)	252, 892, 1005, 1090
CfoI	GCGC	2 cut(s)	402, 669
Cfr10I	RCCGGY	3 cut(s)	42, 60, 1083
Cfr13I	GGNCC	6 cut(s)	40, 86, 287, 740, 763, 781
CseI	GACGC	2 cut(s)	58, 810
Csp6I	GTAC	4 cut(s)	10, 64, 855, 959
CviAII	CATG	5 cut(s)	236, 589, 688, 773, 866
CviQI	GTAC	4 cut(s)	10, 64, 855, 959
DdeI	CTNAG	9 cut(s)	267, 375, 389, 561, 571, 808, 919, 936, 973
DinI	GGCGCC	1 cut(s)	668
DpnI	GATC	5 cut(s)	361, 517, 543, 1047, 1056
DpnII	GATC	5 cut(s)	359, 515, 541, 1045, 1054
DraI	TTTAAA	1 cut(s)	301
EaeI	YGGCCR	1 cut(s)	44
EagI	CGGCCG	1 cut(s)	44
EciI	GGCGGA	1 cut(s)	919
EclXI	CGGCCG	1 cut(s)	44
Eco130I	CCWWGG	2 cut(s)	670, 743
Eco147I	AGGCCT	1 cut(s)	834
Eco24I	GRGCYC	1 cut(s)	162
Eco31I	GGTCTC	1 cut(s)	502
Eco47I	GGWCC	4 cut(s)	40, 740, 763, 781
Eco52I	CGGCCG	1 cut(s)	44
Eco57I	CTGAAG	1 cut(s)	104
Eco81I	CCTNAGG	1 cut(s)	375
Eco88I	CYCGRG	1 cut(s)	1073
EcoO109I	RGGNCCY	2 cut(s)	86, 287
EcoRII	CCWGG	1 cut(s)	783
EcoT14I	CCWWGG	2 cut(s)	670, 743
EcoT38I	GRGCYC	1 cut(s)	162
EgeI	GGCGCC	1 cut(s)	668
EheI	GGCGCC	1 cut(s)	668
ErhI	CCWWGG	2 cut(s)	670, 743
Esp3I	CGTCTC	1 cut(s)	1076
FaeI	CATG	5 cut(s)	239, 592, 691, 776, 869
FaqI	GGGAC	2 cut(s)	158, 813
FatI	CATG	5 cut(s)	235, 588, 687, 772, 865
Fnu4HI	GCNGC	1 cut(s)	933
FokI	GGATG	2 cut(s)	167, 713
FriOI	GRGCYC	1 cut(s)	162
Fsp4HI	GCNGC	1 cut(s)	933
FspBI	CTAG	4 cut(s)	845, 1014, 1034, 1049
GlaI	GCGC	2 cut(s)	401, 668
GluI	GCNGC	1 cut(s)	933
GsaI	CCCAGC	1 cut(s)	582
GsuI	CTGGAG	2 cut(s)	192, 806
HaeII	RGCGCY	1 cut(s)	670
HaeIII	GGCC	5 cut(s)	46, 87, 288, 640, 834
HapII	CCGG	5 cut(s)	43, 47, 61, 796, 1084
HgaI	GACGC	2 cut(s)	58, 810
HhaI	GCGC	2 cut(s)	402, 669
Hin1I	GRCGYC	2 cut(s)	69, 667
Hin1II	CATG	5 cut(s)	239, 592, 691, 776, 869
Hin6I	GCGC	2 cut(s)	400, 667
HinP1I	GCGC	2 cut(s)	400, 667
HincII	GTYRAC	3 cut(s)	454, 751, 1067
HindII	GTYRAC	3 cut(s)	454, 751, 1067
HinfI	GANTC	3 cut(s)	134, 458, 629
HpaI	GTTAAC	1 cut(s)	454
HpaII	CCGG	5 cut(s)	43, 47, 61, 796, 1084
HphI	GGTGA	5 cut(s)	221, 226, 269, 439, 488
Hpy166II	GTNNAC	5 cut(s)	454, 620, 751, 763, 1067
Hpy188I	TCNGA	8 cut(s)	368, 390, 463, 523, 718, 839, 922, 967
Hpy188III	TCNNGA	8 cut(s)	29, 103, 122, 679, 876, 954, 1049, 1073
Hpy8I	GTNNAC	5 cut(s)	454, 620, 751, 763, 1067
Hpy99I	CGWCG	1 cut(s)	967
HpyAV	CCTTC	5 cut(s)	128, 300, 418, 549, 819
HpyCH4III	ACNGT	1 cut(s)	963
HpyCH4IV	ACGT	3 cut(s)	114, 240, 1069
HpyCH4V	TGCA	1 cut(s)	653
HpyF10VI	GCNNNNNNNGC	5 cut(s)	52, 66, 491, 810, 1039
HpyF3I	CTNAG	9 cut(s)	267, 375, 389, 561, 571, 808, 919, 936, 973
HpySE526I	ACGT	3 cut(s)	114, 240, 1069
Hsp92I	GRCGYC	2 cut(s)	69, 667
Hsp92II	CATG	5 cut(s)	239, 592, 691, 776, 869
HspAI	GCGC	2 cut(s)	400, 667
KasI	GGCGCC	1 cut(s)	666
KspAI	GTTAAC	1 cut(s)	454
Kzo9I	GATC	5 cut(s)	359, 515, 541, 1045, 1054
LmnI	GCTCC	1 cut(s)	491
LweI	GCATC	3 cut(s)	180, 557, 707
MaeI	CTAG	4 cut(s)	845, 1014, 1034, 1049
MaeII	ACGT	3 cut(s)	114, 240, 1069
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	5 cut(s)	361, 517, 543, 1047, 1056
MbiI	CCGCTC	1 cut(s)	414
MboI	GATC	5 cut(s)	359, 515, 541, 1045, 1054
MboII	GAAGA	4 cut(s)	545, 694, 936, 1064
MfeI	CAATTG	1 cut(s)	342
MflI	RGATCY	2 cut(s)	359, 1045
MhlI	GDGCHC	2 cut(s)	162, 844
MluCI	AATT	4 cut(s)	271, 342, 524, 648
Mly113I	GGCGCC	1 cut(s)	667
MlyI	GAGTC	2 cut(s)	143, 467
MmeI	TCCRAC	1 cut(s)	945
MroXI	GAANNNNTTC	1 cut(s)	384
MseI	TTAA	4 cut(s)	207, 300, 408, 453
MslI	CAYNNNNRTG	4 cut(s)	77, 234, 593, 771
MspI	CCGG	5 cut(s)	43, 47, 61, 796, 1084
MspR9I	CCNGG	2 cut(s)	785, 797
MunI	CAATTG	1 cut(s)	342
MvaI	CCWGG	1 cut(s)	785
MwoI	GCNNNNNNNGC	5 cut(s)	52, 66, 491, 810, 1039
NarI	GGCGCC	1 cut(s)	667
NciI	CCSGG	1 cut(s)	797
NdeII	GATC	5 cut(s)	359, 515, 541, 1045, 1054
NlaIII	CATG	5 cut(s)	239, 592, 691, 776, 869
NlaIV	GGNNCC	3 cut(s)	88, 493, 668
NmeAIII	GCCGAG	1 cut(s)	531
NmuCI	GTSAC	1 cut(s)	70
NspV	TTCGAA	1 cut(s)	280
PaeR7I	CTCGAG	1 cut(s)	1073
PceI	AGGCCT	1 cut(s)	834
PdmI	GAANNNNTTC	1 cut(s)	384
PfeI	GAWTC	1 cut(s)	629
PkrI	GCNGC	1 cut(s)	934
PleI	GAGTC	2 cut(s)	142, 466
PluTI	GGCGCC	1 cut(s)	670
PpsI	GAGTC	2 cut(s)	142, 466
Psp6I	CCWGG	1 cut(s)	783
PspFI	CCCAGC	1 cut(s)	578
PspGI	CCWGG	1 cut(s)	783
PspN4I	GGNNCC	3 cut(s)	88, 493, 668
PspPI	GGNCC	6 cut(s)	40, 86, 287, 740, 763, 781
PsuI	RGATCY	2 cut(s)	359, 1045
RsaI	GTAC	4 cut(s)	11, 65, 856, 960
RsaNI	GTAC	4 cut(s)	10, 64, 855, 959
RseI	CAYNNNNRTG	4 cut(s)	77, 234, 593, 771
SaqAI	TTAA	4 cut(s)	207, 300, 408, 453
SatI	GCNGC	1 cut(s)	933
Sau3AI	GATC	5 cut(s)	359, 515, 541, 1045, 1054
Sau96I	GGNCC	6 cut(s)	40, 86, 287, 740, 763, 781
SchI	GAGTC	2 cut(s)	143, 467
ScrFI	CCNGG	2 cut(s)	785, 797
SduI	GDGCHC	2 cut(s)	162, 844
SfaNI	GCATC	3 cut(s)	180, 557, 707
SfoI	GGCGCC	1 cut(s)	668
Sfr274I	CTCGAG	1 cut(s)	1073
SfuI	TTCGAA	1 cut(s)	280
SinI	GGWCC	4 cut(s)	40, 740, 763, 781
SlaI	CTCGAG	1 cut(s)	1073
SmiMI	CAYNNNNRTG	4 cut(s)	77, 234, 593, 771
SmlI	CTYRAG	2 cut(s)	161, 1073
SmoI	CTYRAG	2 cut(s)	161, 1073
Sse9I	AATT	4 cut(s)	271, 342, 524, 648
SseBI	AGGCCT	1 cut(s)	834
SsiI	CCGC	3 cut(s)	414, 930, 933
SspDI	GGCGCC	1 cut(s)	666
SspMI	CTAG	4 cut(s)	845, 1014, 1034, 1049
StuI	AGGCCT	1 cut(s)	834
StyD4I	CCNGG	2 cut(s)	783, 795
StyI	CCWWGG	2 cut(s)	670, 743
TaaI	ACNGT	1 cut(s)	963
TaiI	ACGT	3 cut(s)	117, 243, 1072
TaqI	TCGA	6 cut(s)	132, 137, 280, 678, 877, 1074
TasI	AATT	4 cut(s)	271, 342, 524, 648
TatI	WGTACW	1 cut(s)	854
TauI	GCSGC	1 cut(s)	935
TfiI	GAWTC	1 cut(s)	629
Tru1I	TTAA	4 cut(s)	207, 300, 408, 453
Tru9I	TTAA	4 cut(s)	207, 300, 408, 453
TscAI	CASTG	3 cut(s)	259, 892, 1012
TseFI	GTSAC	1 cut(s)	70
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	1 cut(s)	715
TspGWI	ACGGA	1 cut(s)	1052
TspRI	CASTG	3 cut(s)	259, 892, 1012
VpaK11BI	GGWCC	4 cut(s)	40, 740, 763, 781
XapI	RAATTY	2 cut(s)	271, 524
XbaI	TCTAGA	1 cut(s)	1048
XhoI	CTCGAG	1 cut(s)	1073
XmnI	GAANNNNTTC	1 cut(s)	384
XspI	CTAG	4 cut(s)	845, 1014, 1034, 1049

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.