Rh5CG043600

(2R)-phospho-3-sulfolactate synthase (ComA)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0007662
Physical Location & Seq
Forward (+)
3018606 .. 3019301
696 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG043600.1

Sequence Viewer

Length: 288 bp
ATGCCAAAGCCGTTTGTGAAAGAGGTGATTGATATGGAGTGTAAGAGCTTGGGATTTGACTCGATTGAGCTGAATGTGGGATCTCTCGGAGTGCCTGCTGAGGAAACGCTTCTGAGACTTGTGCGCTTGATTAAGAGCGGTGGCTTGAAAGTGAAGCCTCTGTTTGAAGTCATGGTTCACGAGTCTGACATTCCGATCCTATTGGTGATAGAGCTTTTGGAGCCTATGTCGTCTCGAGACCAAGATCATCTGCACCAGGACGTACGTTTGCGTAACAAGAGTGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ComA

Protein Analysis

95

Amino Acids

10.69

Weight (kDa)

5.55

Isoelectric Point (pI)

62.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ComA PF02679 13 - 73 1.1e-06 (2R)-phospho-3-sulfolactate synthase (ComA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 138
AciI CCGC 1 cut(s) 138
AclWI GGATC 2 cut(s) 88, 190
AfaI GTAC 1 cut(s) 264
AgsI TTSAA 2 cut(s) 148, 167
AjnI CCWGG 1 cut(s) 255
AluBI AGCT 3 cut(s) 48, 70, 214
AluI AGCT 3 cut(s) 48, 70, 214
Alw26I GTCTC 3 cut(s) 109, 231, 237
AlwI GGATC 2 cut(s) 88, 190
Ama87I CYCGRG 1 cut(s) 234
Asp700I GAANNNNTTC 1 cut(s) 108
AspLEI GCGC 1 cut(s) 126
AsuHPI GGTGA 2 cut(s) 37, 217
AvaI CYCGRG 1 cut(s) 234
BauI CACGAG 1 cut(s) 179
BbvCI CCTCAGC 1 cut(s) 99
BciT130I CCWGG 1 cut(s) 257
BcoDI GTCTC 3 cut(s) 109, 231, 237
Bme1390I CCNGG 1 cut(s) 257
BmeT110I CYCGRG 1 cut(s) 234
BmiI GGNNCC 1 cut(s) 222
BmrFI CCNGG 1 cut(s) 257
Bpu10I CCTNAGC 1 cut(s) 99
BsaI GGTCTC 1 cut(s) 231
BsaXI ACNNNNNCTCC 2 cut(s) 212, 242
BseBI CCWGG 1 cut(s) 257
BseMII CTCAG 2 cut(s) 90, 104
BsgI GTGCAG 1 cut(s) 236
BsiHKCI CYCGRG 1 cut(s) 234
BsiWI CGTACG 1 cut(s) 262
BsmAI GTCTC 3 cut(s) 109, 231, 237
BsmBI CGTCTC 1 cut(s) 237
Bso31I GGTCTC 1 cut(s) 231
BsoBI CYCGRG 1 cut(s) 234
Bsp143I GATC 3 cut(s) 80, 195, 244
BspACI CCGC 1 cut(s) 138
BspCNI CTCAG 2 cut(s) 91, 105
BspLI GGNNCC 1 cut(s) 222
BspPI GGATC 2 cut(s) 88, 190
BspTNI GGTCTC 1 cut(s) 231
BsrBI CCGCTC 1 cut(s) 138
BssMI GATC 3 cut(s) 80, 195, 244
BssSI CACGAG 1 cut(s) 179
Bst2BI CACGAG 1 cut(s) 179
Bst2UI CCWGG 1 cut(s) 257
BstC8I GCNNGC 1 cut(s) 96
BstDEI CTNAG 2 cut(s) 99, 113
BstHHI GCGC 1 cut(s) 126
BstKTI GATC 3 cut(s) 83, 198, 247
BstMAI GTCTC 3 cut(s) 109, 231, 237
BstMBI GATC 3 cut(s) 80, 195, 244
BstMWI GCNNNNNNNGC 1 cut(s) 220
BstNI CCWGG 1 cut(s) 257
BstSCI CCNGG 1 cut(s) 255
BstX2I RGATCY 1 cut(s) 80
BstYI RGATCY 1 cut(s) 80
Cac8I GCNNGC 1 cut(s) 96
CfoI GCGC 1 cut(s) 126
Csp6I GTAC 1 cut(s) 263
CviAII CATG 1 cut(s) 172
CviJI RGCY 7 cut(s) 10, 48, 70, 144, 157, 214, 223
CviKI_1 RGCY 7 cut(s) 10, 48, 70, 144, 157, 214, 223
CviQI GTAC 1 cut(s) 263
DdeI CTNAG 2 cut(s) 99, 113
DpnI GATC 3 cut(s) 82, 197, 246
DpnII GATC 3 cut(s) 80, 195, 244
Eco31I GGTCTC 1 cut(s) 231
Eco88I CYCGRG 1 cut(s) 234
EcoRII CCWGG 1 cut(s) 255
Esp3I CGTCTC 1 cut(s) 237
FaeI CATG 1 cut(s) 175
FaiI YATR 3 cut(s) 35, 173, 227
FatI CATG 1 cut(s) 171
GlaI GCGC 1 cut(s) 125
HhaI GCGC 1 cut(s) 126
Hin1II CATG 1 cut(s) 175
Hin6I GCGC 1 cut(s) 124
HinP1I GCGC 1 cut(s) 124
HinfI GANTC 2 cut(s) 59, 182
HphI GGTGA 2 cut(s) 37, 217
Hpy166II GTNNAC 1 cut(s) 178
Hpy188I TCNGA 4 cut(s) 89, 114, 187, 195
Hpy188III TCNNGA 3 cut(s) 179, 234, 236
Hpy8I GTNNAC 1 cut(s) 178
HpyCH4IV ACGT 2 cut(s) 261, 265
HpyCH4V TGCA 1 cut(s) 253
HpyF10VI GCNNNNNNNGC 1 cut(s) 220
HpyF3I CTNAG 2 cut(s) 99, 113
HpySE526I ACGT 2 cut(s) 261, 265
Hsp92II CATG 1 cut(s) 175
HspAI GCGC 1 cut(s) 124
Kzo9I GATC 3 cut(s) 80, 195, 244
LmnI GCTCC 1 cut(s) 220
LpnPI CCDG 3 cut(s) 108, 242, 269
MaeII ACGT 2 cut(s) 261, 265
MaeIII GTNAC 1 cut(s) 272
MalI GATC 3 cut(s) 82, 197, 246
MbiI CCGCTC 1 cut(s) 138
MboI GATC 3 cut(s) 80, 195, 244
MflI RGATCY 1 cut(s) 80
MlyI GAGTC 2 cut(s) 53, 191
MnlI CCTC 3 cut(s) 16, 94, 168
MroXI GAANNNNTTC 1 cut(s) 108
MseI TTAA 1 cut(s) 132
MspR9I CCNGG 1 cut(s) 257
MvaI CCWGG 1 cut(s) 257
MwoI GCNNNNNNNGC 1 cut(s) 220
NdeII GATC 3 cut(s) 80, 195, 244
NlaIII CATG 1 cut(s) 175
NlaIV GGNNCC 1 cut(s) 222
PaeR7I CTCGAG 1 cut(s) 234
PdmI GAANNNNTTC 1 cut(s) 108
Pfl23II CGTACG 1 cut(s) 262
PleI GAGTC 2 cut(s) 53, 190
PpsI GAGTC 2 cut(s) 53, 190
Psp6I CCWGG 1 cut(s) 255
PspGI CCWGG 1 cut(s) 255
PspLI CGTACG 1 cut(s) 262
PspN4I GGNNCC 1 cut(s) 222
PsuI RGATCY 1 cut(s) 80
RsaI GTAC 1 cut(s) 264
RsaNI GTAC 1 cut(s) 263
SaqAI TTAA 1 cut(s) 132
Sau3AI GATC 3 cut(s) 80, 195, 244
SchI GAGTC 2 cut(s) 53, 191
ScrFI CCNGG 1 cut(s) 257
SetI ASST 6 cut(s) 27, 50, 72, 216, 264, 268
Sfr274I CTCGAG 1 cut(s) 234
SlaI CTCGAG 1 cut(s) 234
SmlI CTYRAG 1 cut(s) 234
SmoI CTYRAG 1 cut(s) 234
SsiI CCGC 1 cut(s) 138
StyD4I CCNGG 1 cut(s) 255
TaiI ACGT 2 cut(s) 264, 268
TaqI TCGA 2 cut(s) 62, 235
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
XhoI CTCGAG 1 cut(s) 234
XmnI GAANNNNTTC 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.