Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0005574

Physical Location & Seq

Genomic Coordinates Forward (+)

28143064 .. 28144444

Gene Structure 1381 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGATGATGCAACCGGGGGCAGGCGGTGTGGCTCCGTCGGCATTGGGCCAGCAGCCCGCCCAGCAGTATGGCCAGCAACCCGCGCAGCCCTACATGATGATGCCACCGCCGAATGCCCAGGCACCTGCCATGTGGGCCCCGCAGTCGCATGTGGCCCCTCCGGCTCCGCAGCTCCCCCAGCACGCCTCCGCCGACGAGGTCCGCACGCTTTGGATCGGCGACCTGCAGTACTGGATGGAGGAGAACTATCTCTACAATATTTTTCTTCACACCGGCGAGGTTGTTTCTGTGAAAGTCATCCGCAATAAGCAAACTTGTCAATCAGAGGGTTACGGGTTCATCGAATTCAATAGCCGTGCTGCTGCGGAAAGAGTGCTTCAGGCATTCAATGGTACCCCAATGCCAAATGGTGCCCAGAATTTTAGATTGAACTGGGCATCTACCGGCGAGAAGCGTTCGGATGATACCCCGGATTATACGATATTTGTTGGAGATTTGGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAGGGCCCGTTATCCATCATGTAAGAGTGCCAAGGTCGTCATTGATAGGCTCACTGGGCGCACCAAGGGGTATGGATTTGTTAAGTTTGGAGATGAGTCTGAACAGATGCGTGCCATGACTGAGATGAATGGAGTTCTATGCTCTACAAGGCCTATGCGAATTGGACCAGCAGCAAACAAAAACGCCGGGGGCAGTCAGCAGTATTCAAATGGAGGCTCTGTCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006979 GO:0008143 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0010035 GO:0010193 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046677 GO:0050896 GO:0070717 GO:0097159 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

255

Amino Acids

27.88

Weight (kDa)

6.31

Isoelectric Point (pI)

49.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	70 - 134	1.2e-12	RNA recognition motif
RRM_1	PF00076	161 - 224	1e-12	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11650 AT1G11650
fragaria_vesca	FvH4_3g02320
malus_domestica	MD10G1319600.v1.1
prunus_persica	Prupe.4G022900_v2.0.a1 Prupe.4G022900_v2.0.a1
pyrus_communis	pycom10g27050
rosa_chinensis	RchiOBHm_Chr5g0003511 RchiOBHm_Chr5g0003531
rosa_laevigata	RLG00000015982 RLG00000031149
rosa_multiflora	Rmu_sc0004279.1_g000010 Rmu_sc0004279.1_g000022 Rmu_sc0009787.1_g000004 Rmu_sc0009787.1_g000007
rosa_roxburghii	Rroxscaffold_1G00072430
rosa_rugosa	Rorug01G0486600 Rorug04G0403900
rosa_samantha	Rh2AG042000 Rh2CG041400 Rh2DG041000 Rh5AG030600 Rh5AG031000 Rh5BG030100 Rh5CG033500 Rh5DG030700
rosa_wichuraiana	Rw5G002850 Rw5G002890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	133
Acc36I	ACCTGC	2 cut(s)	133, 231
Acc65I	GGTACC	1 cut(s)	392
AccB1I	GGYRCC	3 cut(s)	121, 392, 410
AccII	CGCG	1 cut(s)	83
AclWI	GGATC	1 cut(s)	221
AcoI	YGGCCR	1 cut(s)	70
AcsI	RAATTY	2 cut(s)	344, 418
AcuI	CTGAAG	1 cut(s)	362
AfaI	GTAC	2 cut(s)	230, 394
AfiI	CCNNNNNNNGG	1 cut(s)	20
AgsI	TTSAA	4 cut(s)	349, 388, 430, 744
AjnI	CCWGG	1 cut(s)	117
AluBI	AGCT	1 cut(s)	172
AluI	AGCT	1 cut(s)	172
Alw26I	GTCTC	1 cut(s)	524
AlwI	GGATC	1 cut(s)	221
AoxI	GGCC	6 cut(s)	46, 70, 135, 153, 540, 686
ApaI	GGGCCC	2 cut(s)	139, 544
ApeKI	GCWGC	7 cut(s)	52, 85, 169, 359, 362, 500, 707
ApoI	RAATTY	2 cut(s)	344, 418
Asp718I	GGTACC	1 cut(s)	392
AspLEI	GCGC	2 cut(s)	85, 597
AspS9I	GGNCC	8 cut(s)	46, 135, 136, 154, 199, 540, 541, 701
AsuC2I	CCSGG	3 cut(s)	15, 470, 724
AvaII	GGWCC	2 cut(s)	199, 701
BaeGI	GKGCMC	3 cut(s)	139, 415, 544
BalI	TGGCCA	1 cut(s)	72
BanI	GGYRCC	3 cut(s)	121, 392, 410
BanII	GRGCYC	2 cut(s)	139, 544
BbvI	GCAGC	7 cut(s)	64, 97, 181, 346, 349, 487, 719
BccI	CCATC	2 cut(s)	229, 559
BceAI	ACGGC	1 cut(s)	339
BciT130I	CCWGG	1 cut(s)	119
BcnI	CCSGG	3 cut(s)	15, 470, 724
BcoDI	GTCTC	1 cut(s)	524
BfmI	CTRYAG	1 cut(s)	224
BfuAI	ACCTGC	2 cut(s)	133, 231
BglI	GCCNNNNNGGC	2 cut(s)	134, 161
BisI	GCNGC	7 cut(s)	53, 86, 170, 360, 363, 501, 708
BlsI	GCNGC	7 cut(s)	54, 87, 171, 361, 364, 502, 709
BmcAI	AGTACT	1 cut(s)	230
Bme1390I	CCNGG	4 cut(s)	15, 119, 470, 724
Bme18I	GGWCC	2 cut(s)	199, 701
BmgT120I	GGNCC	8 cut(s)	46, 135, 136, 154, 199, 540, 541, 701
BmiI	GGNNCC	9 cut(s)	33, 123, 137, 138, 156, 165, 394, 412, 542
BmrFI	CCNGG	4 cut(s)	15, 119, 470, 724
BmrI	ACTGGG	2 cut(s)	442, 600
BmsI	GCATC	3 cut(s)	90, 446, 633
BmuI	ACTGGG	2 cut(s)	442, 600
BpuMI	CCSGG	3 cut(s)	15, 470, 724
BsaJI	CCNNGG	6 cut(s)	14, 117, 468, 567, 600, 723
BsaXI	ACNNNNNCTCC	1 cut(s)	741
Bsc4I	CCNNNNNNNGG	1 cut(s)	20
Bse118I	RCCGGY	2 cut(s)	272, 443
Bse1I	ACTGG	3 cut(s)	236, 437, 595
BseBI	CCWGG	1 cut(s)	119
BseDI	CCNNGG	6 cut(s)	14, 117, 468, 567, 600, 723
BseGI	GGATG	3 cut(s)	240, 297, 466
BseLI	CCNNNNNNNGG	1 cut(s)	20
BseMII	CTCAG	1 cut(s)	648
BseNI	ACTGG	3 cut(s)	236, 437, 595
BseRI	GAGGAG	1 cut(s)	254
BseSI	GKGCMC	3 cut(s)	139, 415, 544
BseXI	GCAGC	7 cut(s)	64, 97, 181, 346, 349, 487, 719
BseYI	CCCAGC	2 cut(s)	60, 177
Bsh1236I	CGCG	1 cut(s)	83
BshFI	GGCC	6 cut(s)	48, 72, 137, 155, 542, 688
BshNI	GGYRCC	3 cut(s)	121, 392, 410
BsiSI	CCGG	6 cut(s)	14, 161, 273, 444, 470, 723
BslI	CCNNNNNNNGG	1 cut(s)	20
BsmAI	GTCTC	1 cut(s)	524
BsmI	GAATGC	2 cut(s)	118, 383
BsnI	GGCC	6 cut(s)	48, 72, 137, 155, 542, 688
Bsp120I	GGGCCC	2 cut(s)	135, 540
Bsp1286I	GDGCHC	3 cut(s)	139, 415, 544
Bsp143I	GATC	1 cut(s)	213
BspANI	GGCC	6 cut(s)	48, 72, 137, 155, 542, 688
BspCNI	CTCAG	1 cut(s)	649
BspFNI	CGCG	1 cut(s)	83
BspLI	GGNNCC	9 cut(s)	33, 123, 137, 138, 156, 165, 394, 412, 542
BspMAI	CTGCAG	1 cut(s)	228
BspMI	ACCTGC	2 cut(s)	133, 231
BspPI	GGATC	1 cut(s)	221
BspT107I	GGYRCC	3 cut(s)	121, 392, 410
BsrFI	RCCGGY	2 cut(s)	272, 443
BsrI	ACTGG	3 cut(s)	236, 437, 595
BssAI	RCCGGY	2 cut(s)	272, 443
BssECI	CCNNGG	6 cut(s)	14, 117, 468, 567, 600, 723
BssMI	GATC	1 cut(s)	213
BssT1I	CCWWGG	2 cut(s)	567, 600
Bst2UI	CCWGG	1 cut(s)	119
BstC8I	GCNNGC	7 cut(s)	22, 50, 57, 74, 183, 206, 648
BstDEI	CTNAG	1 cut(s)	657
BstF5I	GGATG	3 cut(s)	240, 297, 466
BstFNI	CGCG	1 cut(s)	83
BstHHI	GCGC	2 cut(s)	85, 597
BstKTI	GATC	1 cut(s)	216
BstMAI	GTCTC	1 cut(s)	524
BstMBI	GATC	1 cut(s)	213
BstMWI	GCNNNNNNNGC	7 cut(s)	38, 61, 82, 134, 161, 178, 592
BstNI	CCWGG	1 cut(s)	119
BstNSI	RCATGY	1 cut(s)	152
BstSCI	CCNGG	4 cut(s)	13, 117, 468, 722
BstSFI	CTRYAG	1 cut(s)	224
BstSLI	GKGCMC	3 cut(s)	139, 415, 544
BstUI	CGCG	1 cut(s)	83
BstV1I	GCAGC	7 cut(s)	64, 97, 181, 346, 349, 487, 719
BstXI	CCANNNNNNTGG	1 cut(s)	68
BsuRI	GGCC	6 cut(s)	48, 72, 137, 155, 542, 688
BtsCI	GGATG	3 cut(s)	240, 297, 466
BtsIMutI	CAGTG	1 cut(s)	588
BveI	ACCTGC	2 cut(s)	133, 231
Cac8I	GCNNGC	7 cut(s)	22, 50, 57, 74, 183, 206, 648
CfoI	GCGC	2 cut(s)	85, 597
Cfr10I	RCCGGY	2 cut(s)	272, 443
Cfr13I	GGNCC	8 cut(s)	46, 135, 136, 154, 199, 540, 541, 701
Csp6I	GTAC	2 cut(s)	229, 393
CviAII	CATG	5 cut(s)	94, 130, 149, 555, 652
CviQI	GTAC	2 cut(s)	229, 393
DdeI	CTNAG	1 cut(s)	657
DpnI	GATC	1 cut(s)	215
DpnII	GATC	1 cut(s)	213
EaeI	YGGCCR	1 cut(s)	70
EciI	GGCGGA	1 cut(s)	178
Eco130I	CCWWGG	2 cut(s)	567, 600
Eco147I	AGGCCT	1 cut(s)	688
Eco24I	GRGCYC	2 cut(s)	139, 544
Eco47I	GGWCC	2 cut(s)	199, 701
Eco57I	CTGAAG	1 cut(s)	362
EcoO109I	RGGNCCY	2 cut(s)	136, 540
EcoRI	GAATTC	1 cut(s)	344
EcoRII	CCWGG	1 cut(s)	117
EcoT14I	CCWWGG	2 cut(s)	567, 600
EcoT38I	GRGCYC	2 cut(s)	139, 544
ErhI	CCWWGG	2 cut(s)	567, 600
FaeI	CATG	5 cut(s)	97, 133, 152, 558, 655
FatI	CATG	5 cut(s)	93, 129, 148, 554, 651
FauI	CCCGC	3 cut(s)	64, 88, 147
Fnu4HI	GCNGC	7 cut(s)	53, 86, 170, 360, 363, 501, 708
FokI	GGATG	3 cut(s)	247, 284, 473
FriOI	GRGCYC	2 cut(s)	139, 544
Fsp4HI	GCNGC	7 cut(s)	53, 86, 170, 360, 363, 501, 708
GlaI	GCGC	2 cut(s)	84, 596
GluI	GCNGC	7 cut(s)	53, 86, 170, 360, 363, 501, 708
GsaI	CCCAGC	2 cut(s)	64, 181
HaeIII	GGCC	6 cut(s)	48, 72, 137, 155, 542, 688
HapII	CCGG	6 cut(s)	14, 161, 273, 444, 470, 723
HhaI	GCGC	2 cut(s)	85, 597
Hin1II	CATG	5 cut(s)	97, 133, 152, 558, 655
Hin6I	GCGC	2 cut(s)	83, 595
HinP1I	GCGC	2 cut(s)	83, 595
HinfI	GANTC	1 cut(s)	632
HpaII	CCGG	6 cut(s)	14, 161, 273, 444, 470, 723
Hpy188I	TCNGA	3 cut(s)	325, 460, 637
Hpy99I	CGWCG	2 cut(s)	40, 197
HpyCH4V	TGCA	2 cut(s)	10, 226
HpyF10VI	GCNNNNNNNGC	7 cut(s)	38, 61, 82, 134, 161, 178, 592
HpyF3I	CTNAG	1 cut(s)	657
Hsp92II	CATG	5 cut(s)	97, 133, 152, 558, 655
HspAI	GCGC	2 cut(s)	83, 595
KpnI	GGTACC	1 cut(s)	396
Kzo9I	GATC	1 cut(s)	213
LmnI	GCTCC	3 cut(s)	37, 169, 177
Lsp1109I	GCAGC	7 cut(s)	64, 97, 181, 346, 349, 487, 719
LweI	GCATC	3 cut(s)	90, 446, 633
MaeIII	GTNAC	2 cut(s)	329, 508
MalI	GATC	1 cut(s)	215
MboI	GATC	1 cut(s)	213
MboII	GAAGA	1 cut(s)	257
MhlI	GDGCHC	3 cut(s)	139, 415, 544
MlsI	TGGCCA	1 cut(s)	72
MluCI	AATT	3 cut(s)	344, 418, 696
MluNI	TGGCCA	1 cut(s)	72
MlyI	GAGTC	1 cut(s)	641
MmeI	TCCRAC	1 cut(s)	469
MnlI	CCTC	7 cut(s)	168, 190, 196, 232, 271, 319, 743
Mox20I	TGGCCA	1 cut(s)	72
MscI	TGGCCA	1 cut(s)	72
MseI	TTAA	1 cut(s)	618
MslI	CAYNNNNRTG	1 cut(s)	98
Msp20I	TGGCCA	1 cut(s)	72
MspI	CCGG	6 cut(s)	14, 161, 273, 444, 470, 723
MspR9I	CCNGG	4 cut(s)	15, 119, 470, 724
Mva1269I	GAATGC	2 cut(s)	118, 383
MvaI	CCWGG	1 cut(s)	119
MvnI	CGCG	1 cut(s)	83
MwoI	GCNNNNNNNGC	7 cut(s)	38, 61, 82, 134, 161, 178, 592
NciI	CCSGG	3 cut(s)	15, 470, 724
NdeII	GATC	1 cut(s)	213
NlaIII	CATG	5 cut(s)	97, 133, 152, 558, 655
NlaIV	GGNNCC	9 cut(s)	33, 123, 137, 138, 156, 165, 394, 412, 542
NmuCI	GTSAC	1 cut(s)	508
NspI	RCATGY	1 cut(s)	152
PaqCI	CACCTGC	1 cut(s)	133
PceI	AGGCCT	1 cut(s)	688
PcsI	WCGNNNNNNNCGW	2 cut(s)	189, 339
PctI	GAATGC	2 cut(s)	118, 383
PflFI	GACNNNGTC	1 cut(s)	197
PkrI	GCNGC	7 cut(s)	54, 87, 171, 361, 364, 502, 709
PleI	GAGTC	1 cut(s)	640
PpsI	GAGTC	1 cut(s)	640
Psp6I	CCWGG	1 cut(s)	117
PspFI	CCCAGC	2 cut(s)	60, 177
PspGI	CCWGG	1 cut(s)	117
PspN4I	GGNNCC	9 cut(s)	33, 123, 137, 138, 156, 165, 394, 412, 542
PspOMI	GGGCCC	2 cut(s)	135, 540
PspPI	GGNCC	8 cut(s)	46, 135, 136, 154, 199, 540, 541, 701
PsrI	GAACNNNNNNTAC	2 cut(s)	236, 268
PstI	CTGCAG	1 cut(s)	228
PsyI	GACNNNGTC	1 cut(s)	197
RsaI	GTAC	2 cut(s)	230, 394
RsaNI	GTAC	2 cut(s)	229, 393
RseI	CAYNNNNRTG	1 cut(s)	98
SaqAI	TTAA	1 cut(s)	618
SatI	GCNGC	7 cut(s)	53, 86, 170, 360, 363, 501, 708
Sau3AI	GATC	1 cut(s)	213
Sau96I	GGNCC	8 cut(s)	46, 135, 136, 154, 199, 540, 541, 701
ScaI	AGTACT	1 cut(s)	230
SchI	GAGTC	1 cut(s)	641
ScrFI	CCNGG	4 cut(s)	15, 119, 470, 724
SduI	GDGCHC	3 cut(s)	139, 415, 544
SetI	ASST	6 cut(s)	127, 174, 201, 225, 282, 573
SfaNI	GCATC	3 cut(s)	90, 446, 633
SfcI	CTRYAG	1 cut(s)	224
SgrAI	CRCCGGYG	1 cut(s)	272
SinI	GGWCC	2 cut(s)	199, 701
SmiMI	CAYNNNNRTG	1 cut(s)	98
Sse9I	AATT	3 cut(s)	344, 418, 696
SseBI	AGGCCT	1 cut(s)	688
SspI	AATATT	1 cut(s)	259
StuI	AGGCCT	1 cut(s)	688
StyD4I	CCNGG	4 cut(s)	13, 117, 468, 722
StyI	CCWWGG	2 cut(s)	567, 600
TaqI	TCGA	1 cut(s)	342
TasI	AATT	3 cut(s)	344, 418, 696
TatI	WGTACW	1 cut(s)	228
Tru1I	TTAA	1 cut(s)	618
Tru9I	TTAA	1 cut(s)	618
TscAI	CASTG	1 cut(s)	595
TseFI	GTSAC	1 cut(s)	508
TseI	GCWGC	7 cut(s)	52, 85, 169, 359, 362, 500, 707
Tsp45I	GTSAC	1 cut(s)	508
TspDTI	ATGAA	2 cut(s)	328, 677
TspGWI	ACGGA	2 cut(s)	24, 527
TspRI	CASTG	1 cut(s)	595
Tth111I	GACNNNGTC	1 cut(s)	197
VpaK11BI	GGWCC	2 cut(s)	199, 701
XapI	RAATTY	2 cut(s)	344, 418
XceI	RCATGY	1 cut(s)	152
ZrmI	AGTACT	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.