Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0003353

Physical Location & Seq

Genomic Coordinates Forward (+)

29459647 .. 29462137

Gene Structure 2491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2184 bp

ATGGGAGGAGAAAAATGCGTGTCTATAATTTCCCTCCTTAATAGAGTAGCAATGTTTCATGTGATAGAATGGACCTTTGACCTTTATGTTCCCCGTGCATTGCGCACTTCGTTTCGAAAGCTTTTGACCGACCGTGACCATGACCTTGTTGGAAGCGTTGTTATGATATCGATGAGAACCTTGAGGAGGAGAAACTTGGAGGGAATCTATTGCCCTGTTCGAAACTATTACAGACATTTGTCAGCCATCGCCAATGGACCCCAACAGTCCCCTGTAACTGTTGGGTCGGAGGCGGCGAGGGATGCGTACCCTCCACTTGTTCATGAAATCCTGCAAATTTGTGCAGGAACAGGTGCACCCGCGGAAGGGAAGGCCTGCCATGCACACATCATACGTTTCGGATTAACAGCAGACACATTAACCTCTAATATGCTCATCAACATGTACTCCAAATGTGGTTTACTTGATTGTGCCGGCAAGGTATTCGATGAAATGCCTGAAAGGAGCTTAGTTTCATGGAATACAATGATTGGGTCACTTGCTCGGAATGGGGAAGAACAAGAAGCTCTTGGTCTTTTCTTGCAGATGCAAAGACAAGGAAACACTTTCAGTGAATTCACCGTTTCAAGTGTTCTTTGTGCTTGTGCTGCGAAATGCGCTGTGTTTGAGAGTAAACAACTGCATGCTCTTGCTGTTAAGTTAGCAATGAATATAAATGTCTATGTGGGAACCGCGTTGCTTGATGTTTATGCAAAGTCTGGTTTGATAAAGGATGCAAGCTCTGTTTTTGAGTCTTTGCCAGAGAGGAGTGATGTTACATGGAGTTCGATGGTTGCCGGGTATGTGCAAAATGAGGTTTTTGAAGAGGCTTTGGTGTTGTTCCATAGAGCTAAAAGGATAGGGTTAGAACAGAACCAGTTTACAGTTTCTTCTGCTATTTGTGCTTGTGCAGGTCTGGCAGCTCTCATTGAAGGAAAGCAGGTGCATGCTCTTTTATCTAAAATTGGCTTTGGTTTGAATATATTTATTGTTTCCTCTCTTATAGACATGTATGCAAAATGTGGTAGCATTAGAGAAGCATACAGTGTGTTTCAAGGTATGAGCGAGAGGAACATTGTTTTATGGAATGCCATGATTTCAGGGTTCGCTAGACATGCTTGCTCCCTAGAGGTGATGATCTTATTTGAGAAAATGCAGCAGATGGGTATGTTCCCGAGCGAAGTAACCTATGTTTCGGTATTAACTGCCTGTAGTCATATGGGACTAGTTGAAAGTGGAAAGAAATATTTCAACCTCATGATAGCAGAGCACAATGTGTCACCAAATGTTGTTCACTATTCATGCATGGTTGATATTTTAGGTCGGTCAGGGTTGATTATTGAAGCCTATGACTTGATACAGAAAATTCCGTTTGGTGTTACTGCTTCTATGTGGGGTTCTTTGTTGGCTTCTTGTAGGATCCATGGAAATCTTGACTTGGCCGAGGTCGCAGCACAGCATTTGTCTGAGATAGAACCTAATAATGCAGGAAACCATATTTTGCTGTCAAATGTTTATGCAGCAAATAAGAAGTGGGAGGAAGTTGCGAGAACAAGGAAGATTCTTAAAGAAAGCGAGTTGAAGAAAGAGAGAGGGAAGAGTTGGATTGAAATAAAGGACAAAGTTCACTCATTTATGGTTGGAGAGAGGAAACATGCTAGAATTGATGAGATATATTCAAAATTGGACGATTTGGTGACAGAATTGAAGATAATGGGGTACAAGGTTGAGACTGAACATGACCTTCATTGCGTGGGTGAAAGCAGAAAGCATGAACTTTTGAGGCACCACAGTGAGAAACTTGCTCTTACTTTTGGGAAGAATCTTAGGATTTGTGGTGATTGCCATGCTTTTATGAAGATTAGTTCAAGTTGTAGGGGAAGGGAAATCATCGTTAGGGATACAAACAGTCTGGTGAAATACTTTTTTGTGTTCGGTTGCGTTTCGAGGGTCCAGTCCAGTTTACCAGCAATGGGATGGGAGCGCAAGAGATTCATCCAATGGCTGCTGATTGGGGATGTGCTCTCCGCTTGCAGAGGGTCTGACGTAGTGCCTAAGGCCAGTTGTTTTGTGATTATACATGAACATATGCGAGTGCAAACAAGCGTAGGCGGTGCGGTGTATCCAACTGAAGGTGTTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

728

Amino Acids

80.85

Weight (kDa)

8.22

Isoelectric Point (pI)

46.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	169 - 216	6.3e-08	PPR repeat family
PPR	PF01535	171 - 200	3.7e-07	PPR repeat
PPR_2	PF13041	370 - 418	4.7e-09	PPR repeat family
E_motif	PF20431	488 - 550	3.6e-19	E motif
DYW_deaminase	PF14432	586 - 651	4.5e-12	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04780
fragaria_vesca	FvH4_7g02270
malus_domestica	MD05G1362900.v1.1 MD05G1363000.v1.1 MD10G1340500.v1.1
prunus_persica	Prupe.2G071000_v2.0.a1 Prupe.2G073400_v2.0.a1
pyrus_communis	pycom05g32940 pycom10g29030
rosa_chinensis	RchiOBHm_Chr1g0319571 RchiOBHm_Chr6g0267541 RchiOBHm_Chr7g0197341
rosa_laevigata	RLG00000030470
rosa_multiflora	Rmu_sc0001522.1_g000010 Rmu_sc0002539.1_g000062 Rmu_sc0031493.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284250 Rroxscaffold_4G00328280 Rroxscaffold_7G00200640
rosa_rugosa	Rorug01G0028300 Rorug01G0028400 Rorug01G0028500 Rorug01G0028600 Rorug06G0033600 Rorug06G0033600
rosa_samantha	Rh1AG040400 Rh1BG037600 Rh1CG041600 Rh1DG028300 Rh6AG155100 Rh6BG155700 Rh6CG150900 Rh6DG141000
rosa_wichuraiana	Rw0G012790 Rw1G003340 Rw6G013310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	970
Acc16I	TGCGCA	1 cut(s)	104
Acc36I	ACCTGC	2 cut(s)	941, 970
AccB1I	GGYRCC	1 cut(s)	1824
AccII	CGCG	2 cut(s)	362, 734
AciI	CCGC	7 cut(s)	293, 360, 362, 732, 2067, 2151, 2156
AclWI	GGATC	2 cut(s)	1453, 1466
AcoI	YGGCCR	1 cut(s)	1479
AcsI	RAATTY	3 cut(s)	336, 614, 1404
AdeI	CACNNNGTG	1 cut(s)	1315
AfaI	GTAC	3 cut(s)	308, 446, 1760
AfiI	CCNNNNNNNGG	5 cut(s)	186, 365, 366, 2012, 2171
AflIII	ACRYGT	2 cut(s)	441, 1047
AhlI	ACTAGT	1 cut(s)	1264
AleI	CACNNNNGTG	1 cut(s)	1830
AluBI	AGCT	6 cut(s)	121, 507, 566, 780, 890, 962
AluI	AGCT	6 cut(s)	121, 507, 566, 780, 890, 962
Alw21I	GWGCWC	3 cut(s)	358, 1311, 2064
Alw26I	GTCTC	1 cut(s)	1763
Alw44I	GTGCAC	1 cut(s)	354
AlwI	GGATC	2 cut(s)	1453, 1466
Ama87I	CYCGRG	1 cut(s)	1213
AoxI	GGCC	3 cut(s)	372, 1479, 2097
ApaLI	GTGCAC	1 cut(s)	354
ApeKI	GCWGC	6 cut(s)	647, 959, 1195, 1490, 1559, 2044
ApoI	RAATTY	3 cut(s)	336, 614, 1404
Asp700I	GAANNNNTTC	1 cut(s)	1286
AspLEI	GCGC	3 cut(s)	105, 659, 2025
AspS9I	GGNCC	3 cut(s)	72, 257, 1990
AsuC2I	CCSGG	1 cut(s)	838
AsuHPI	GGTGA	7 cut(s)	610, 1183, 1311, 1747, 1808, 1889, 1966
AsuII	TTCGAA	2 cut(s)	115, 220
AvaI	CYCGRG	1 cut(s)	1213
AvaII	GGWCC	3 cut(s)	72, 257, 1990
AxyI	CCTNAGG	1 cut(s)	2094
BaeGI	GKGCMC	1 cut(s)	358
BamHI	GGATCC	1 cut(s)	1458
BanI	GGYRCC	1 cut(s)	1824
Bbv12I	GWGCWC	3 cut(s)	358, 1311, 2064
BbvI	GCAGC	6 cut(s)	634, 971, 1207, 1502, 1571, 2031
BccI	CCATC	4 cut(s)	254, 823, 1195, 2010
BcgI	CGANNNNNNTGC	2 cut(s)	466, 500
BciVI	GTATCC	2 cut(s)	1933, 2172
BcnI	CCSGG	1 cut(s)	838
BcoDI	GTCTC	1 cut(s)	1763
BcuI	ACTAGT	1 cut(s)	1264
BfaI	CTAG	4 cut(s)	1149, 1166, 1265, 1698
BfmI	CTRYAG	1 cut(s)	1249
BfuAI	ACCTGC	2 cut(s)	941, 970
BfuI	GTATCC	2 cut(s)	1933, 2172
BisI	GCNGC	7 cut(s)	294, 648, 960, 1196, 1491, 1560, 2045
BlsI	GCNGC	7 cut(s)	295, 649, 961, 1197, 1492, 1561, 2046
Bme1390I	CCNGG	1 cut(s)	838
Bme18I	GGWCC	3 cut(s)	72, 257, 1990
BmeT110I	CYCGRG	1 cut(s)	1213
BmgT120I	GGNCC	3 cut(s)	72, 257, 1990
BmiI	GGNNCC	5 cut(s)	259, 730, 1460, 1826, 1991
BmrFI	CCNGG	1 cut(s)	838
BmsI	GCATC	3 cut(s)	292, 576, 763
BoxI	GACNNNNGTC	1 cut(s)	238
Bpu14I	TTCGAA	2 cut(s)	115, 220
BpuEI	CTTGAG	1 cut(s)	202
BpuMI	CCSGG	1 cut(s)	838
Bsa29I	ATCGAT	1 cut(s)	170
BsaJI	CCNNGG	3 cut(s)	360, 1462, 1482
BsaXI	ACNNNNNCTCC	2 cut(s)	431, 461
Bsc4I	CCNNNNNNNGG	5 cut(s)	186, 365, 366, 2012, 2171
Bse118I	RCCGGY	1 cut(s)	473
Bse1I	ACTGG	4 cut(s)	916, 1993, 1998, 2100
Bse21I	CCTNAGG	1 cut(s)	2094
Bse3DI	GCAATG	5 cut(s)	57, 98, 711, 1786, 2016
BseCI	ATCGAT	1 cut(s)	170
BseDI	CCNNGG	3 cut(s)	360, 1462, 1482
BseGI	GGATG	5 cut(s)	307, 778, 2021, 2034, 2062
BseLI	CCNNNNNNNGG	5 cut(s)	186, 365, 366, 2012, 2171
BseMI	GCAATG	5 cut(s)	57, 98, 711, 1786, 2016
BseMII	CTCAG	1 cut(s)	1497
BseNI	ACTGG	4 cut(s)	916, 1993, 1998, 2100
BseRI	GAGGAG	4 cut(s)	21, 199, 202, 820
BseSI	GKGCMC	1 cut(s)	358
BseXI	GCAGC	6 cut(s)	634, 971, 1207, 1502, 1571, 2031
BsgI	GTGCAG	2 cut(s)	363, 969
Bsh1236I	CGCG	2 cut(s)	362, 734
Bsh1285I	CGRYCG	1 cut(s)	133
BshFI	GGCC	3 cut(s)	374, 1481, 2099
BshNI	GGYRCC	1 cut(s)	1824
BshVI	ATCGAT	1 cut(s)	170
BsiEI	CGRYCG	1 cut(s)	133
BsiHKAI	GWGCWC	3 cut(s)	358, 1311, 2064
BsiHKCI	CYCGRG	1 cut(s)	1213
BsiSI	CCGG	2 cut(s)	474, 837
BslFI	GGGAC	2 cut(s)	253, 1275
BslI	CCNNNNNNNGG	5 cut(s)	186, 365, 366, 2012, 2171
BsmAI	GTCTC	1 cut(s)	1763
BsmFI	GGGAC	2 cut(s)	253, 1275
BsmI	GAATGC	1 cut(s)	1132
BsnI	GGCC	3 cut(s)	374, 1481, 2099
BsoBI	CYCGRG	1 cut(s)	1213
Bsp119I	TTCGAA	2 cut(s)	115, 220
Bsp1286I	GDGCHC	3 cut(s)	358, 1311, 2064
Bsp143I	GATC	2 cut(s)	1176, 1458
Bsp19I	CCATGG	1 cut(s)	1462
BspACI	CCGC	7 cut(s)	293, 360, 362, 732, 2067, 2151, 2156
BspANI	GGCC	3 cut(s)	374, 1481, 2099
BspCNI	CTCAG	1 cut(s)	1498
BspDI	ATCGAT	1 cut(s)	170
BspFNI	CGCG	2 cut(s)	362, 734
BspHI	TCATGA	2 cut(s)	322, 1296
BspLI	GGNNCC	5 cut(s)	259, 730, 1460, 1826, 1991
BspMI	ACCTGC	2 cut(s)	941, 970
BspPI	GGATC	2 cut(s)	1453, 1466
BspT104I	TTCGAA	2 cut(s)	115, 220
BspT107I	GGYRCC	1 cut(s)	1824
BsrDI	GCAATG	5 cut(s)	57, 98, 711, 1786, 2016
BsrFI	RCCGGY	1 cut(s)	473
BsrI	ACTGG	4 cut(s)	916, 1993, 1998, 2100
BssAI	RCCGGY	1 cut(s)	473
BssECI	CCNNGG	3 cut(s)	360, 1462, 1482
BssMI	GATC	2 cut(s)	1176, 1458
BssT1I	CCWWGG	1 cut(s)	1462
Bst4CI	ACNGT	8 cut(s)	134, 267, 280, 622, 925, 1085, 1832, 1949
Bst6I	CTCTTC	2 cut(s)	858, 1631
BstBI	TTCGAA	2 cut(s)	115, 220
BstC8I	GCNNGC	7 cut(s)	376, 475, 684, 778, 987, 1159, 2071
BstDEI	CTNAG	4 cut(s)	508, 1506, 1865, 2094
BstDSI	CCRYGG	2 cut(s)	360, 1462
BstENI	CCTNNNNNAGG	1 cut(s)	184
BstF5I	GGATG	5 cut(s)	307, 778, 2021, 2034, 2062
BstFNI	CGCG	2 cut(s)	362, 734
BstHHI	GCGC	3 cut(s)	105, 659, 2025
BstKTI	GATC	2 cut(s)	1179, 1461
BstMAI	GTCTC	1 cut(s)	1763
BstMBI	GATC	2 cut(s)	1176, 1458
BstMCI	CGRYCG	1 cut(s)	133
BstMWI	GCNNNNNNNGC	8 cut(s)	302, 380, 647, 656, 941, 956, 1154, 1487
BstNSI	RCATGY	6 cut(s)	445, 686, 989, 1051, 1157, 1697
BstPAI	GACNNNNGTC	1 cut(s)	238
BstSCI	CCNGG	1 cut(s)	836
BstSFI	CTRYAG	1 cut(s)	1249
BstSLI	GKGCMC	1 cut(s)	358
BstUI	CGCG	2 cut(s)	362, 734
BstV1I	GCAGC	6 cut(s)	634, 971, 1207, 1502, 1571, 2031
BstX2I	RGATCY	1 cut(s)	1458
BstYI	RGATCY	1 cut(s)	1458
Bsu15I	ATCGAT	1 cut(s)	170
Bsu36I	CCTNAGG	1 cut(s)	2094
BsuI	GTATCC	2 cut(s)	1933, 2172
BsuRI	GGCC	3 cut(s)	374, 1481, 2099
BsuTUI	ATCGAT	1 cut(s)	170
BtgI	CCRYGG	2 cut(s)	360, 1462
BtgZI	GCGATG	1 cut(s)	232
BtsCI	GGATG	5 cut(s)	307, 778, 2021, 2034, 2062
BtsIMutI	CAGTG	3 cut(s)	616, 1090, 1837
BveI	ACCTGC	2 cut(s)	941, 970
Cac8I	GCNNGC	7 cut(s)	376, 475, 684, 778, 987, 1159, 2071
CciI	TCATGA	2 cut(s)	322, 1296
CfoI	GCGC	3 cut(s)	105, 659, 2025
Cfr10I	RCCGGY	1 cut(s)	473
Cfr13I	GGNCC	3 cut(s)	72, 257, 1990
Cfr42I	CCGCGG	1 cut(s)	363
ClaI	ATCGAT	1 cut(s)	170
Csp6I	GTAC	3 cut(s)	307, 445, 1759
CviQI	GTAC	3 cut(s)	307, 445, 1759
DdeI	CTNAG	4 cut(s)	508, 1506, 1865, 2094
DpnI	GATC	2 cut(s)	1178, 1460
DpnII	GATC	2 cut(s)	1176, 1458
DraIII	CACNNNGTG	1 cut(s)	1315
EaeI	YGGCCR	1 cut(s)	1479
Eam1104I	CTCTTC	2 cut(s)	858, 1631
EarI	CTCTTC	2 cut(s)	858, 1631
Eco130I	CCWWGG	1 cut(s)	1462
Eco147I	AGGCCT	1 cut(s)	374
Eco32I	GATATC	1 cut(s)	168
Eco47I	GGWCC	3 cut(s)	72, 257, 1990
Eco81I	CCTNAGG	1 cut(s)	2094
Eco88I	CYCGRG	1 cut(s)	1213
EcoNI	CCTNNNNNAGG	1 cut(s)	184
EcoRI	GAATTC	1 cut(s)	614
EcoRV	GATATC	1 cut(s)	168
EcoT14I	CCWWGG	1 cut(s)	1462
EcoT22I	ATGCAT	1 cut(s)	1346
ErhI	CCWWGG	1 cut(s)	1462
FalI	AAGNNNNNCTT	2 cut(s)	552, 584
FaqI	GGGAC	2 cut(s)	253, 1275
FauI	CCCGC	1 cut(s)	367
FauNDI	CATATG	2 cut(s)	1257, 2127
Fnu4HI	GCNGC	7 cut(s)	294, 648, 960, 1196, 1491, 1560, 2045
FokI	GGATG	5 cut(s)	314, 785, 2021, 2028, 2069
Fsp4HI	GCNGC	7 cut(s)	294, 648, 960, 1196, 1491, 1560, 2045
FspBI	CTAG	4 cut(s)	1149, 1166, 1265, 1698
FspI	TGCGCA	1 cut(s)	104
GlaI	GCGC	3 cut(s)	104, 658, 2024
GluI	GCNGC	7 cut(s)	294, 648, 960, 1196, 1491, 1560, 2045
HaeIII	GGCC	3 cut(s)	374, 1481, 2099
HapII	CCGG	2 cut(s)	474, 837
HhaI	GCGC	3 cut(s)	105, 659, 2025
Hin6I	GCGC	3 cut(s)	103, 657, 2023
HinP1I	GCGC	3 cut(s)	103, 657, 2023
HindIII	AAGCTT	1 cut(s)	119
HinfI	GANTC	5 cut(s)	204, 791, 1600, 1861, 2031
HpaII	CCGG	2 cut(s)	474, 837
HphI	GGTGA	7 cut(s)	610, 1183, 1311, 1747, 1808, 1889, 1966
Hpy166II	GTNNAC	7 cut(s)	356, 461, 674, 921, 1333, 1666, 2003
Hpy188I	TCNGA	5 cut(s)	289, 401, 546, 1507, 2083
Hpy188III	TCNNGA	4 cut(s)	323, 1213, 1297, 1472
Hpy8I	GTNNAC	7 cut(s)	356, 461, 674, 921, 1333, 1666, 2003
HpyAV	CCTTC	6 cut(s)	359, 364, 965, 1793, 1914, 2165
HpyCH4III	ACNGT	8 cut(s)	134, 267, 280, 622, 925, 1085, 1832, 1949
HpyCH4IV	ACGT	2 cut(s)	394, 2085
HpyF10VI	GCNNNNNNNGC	8 cut(s)	302, 380, 647, 656, 941, 956, 1154, 1487
HpyF3I	CTNAG	4 cut(s)	508, 1506, 1865, 2094
HpySE526I	ACGT	2 cut(s)	394, 2085
HspAI	GCGC	3 cut(s)	103, 657, 2023
KroI	GCCGGC	1 cut(s)	473
KroNI	GCCGGC	1 cut(s)	475
KspI	CCGCGG	1 cut(s)	363
Kzo9I	GATC	2 cut(s)	1176, 1458
LmnI	GCTCC	3 cut(s)	504, 1166, 2020
Lsp1109I	GCAGC	6 cut(s)	634, 971, 1207, 1502, 1571, 2031
LweI	GCATC	3 cut(s)	292, 576, 763
MaeI	CTAG	4 cut(s)	1149, 1166, 1265, 1698
MaeII	ACGT	2 cut(s)	394, 2085
MaeIII	GTNAC	8 cut(s)	134, 274, 534, 814, 1222, 1317, 1417, 1735
MalI	GATC	2 cut(s)	1178, 1460
MboI	GATC	2 cut(s)	1176, 1458
MboII	GAAGA	9 cut(s)	566, 875, 921, 1609, 1633, 1648, 1759, 1870, 1909
MflI	RGATCY	1 cut(s)	1458
MhlI	GDGCHC	3 cut(s)	358, 1311, 2064
MluCI	AATT	8 cut(s)	27, 336, 614, 1002, 1404, 1701, 1721, 1742
MlyI	GAGTC	1 cut(s)	800
MmeI	TCCRAC	4 cut(s)	130, 267, 1622, 1660
Mph1103I	ATGCAT	1 cut(s)	1346
MroNI	GCCGGC	1 cut(s)	473
MroXI	GAANNNNTTC	1 cut(s)	1286
MseI	TTAA	6 cut(s)	39, 404, 419, 696, 1241, 1605
MslI	CAYNNNNRTG	2 cut(s)	440, 1830
MspA1I	CMGCKG	1 cut(s)	362
MspI	CCGG	2 cut(s)	474, 837
MspR9I	CCNGG	1 cut(s)	838
Mva1269I	GAATGC	1 cut(s)	1132
MvnI	CGCG	2 cut(s)	362, 734
MwoI	GCNNNNNNNGC	8 cut(s)	302, 380, 647, 656, 941, 956, 1154, 1487
NaeI	GCCGGC	1 cut(s)	475
NciI	CCSGG	1 cut(s)	838
NcoI	CCATGG	1 cut(s)	1462
NdeI	CATATG	2 cut(s)	1257, 2127
NdeII	GATC	2 cut(s)	1176, 1458
NgoMIV	GCCGGC	1 cut(s)	473
NlaIV	GGNNCC	5 cut(s)	259, 730, 1460, 1826, 1991
NmeAIII	GCCGAG	1 cut(s)	1507
NmuCI	GTSAC	4 cut(s)	134, 534, 1317, 1735
NsbI	TGCGCA	1 cut(s)	104
NsiI	ATGCAT	1 cut(s)	1346
NspI	RCATGY	6 cut(s)	445, 686, 989, 1051, 1157, 1697
NspV	TTCGAA	2 cut(s)	115, 220
OliI	CACNNNNGTG	1 cut(s)	1830
PaeI	GCATGC	2 cut(s)	686, 989
PagI	TCATGA	2 cut(s)	322, 1296
PaqCI	CACCTGC	1 cut(s)	970
PceI	AGGCCT	1 cut(s)	374
PciI	ACATGT	2 cut(s)	441, 1047
PcsI	WCGNNNNNNNCGW	1 cut(s)	293
PctI	GAATGC	1 cut(s)	1132
PdiI	GCCGGC	1 cut(s)	475
PdmI	GAANNNNTTC	1 cut(s)	1286
PfeI	GAWTC	4 cut(s)	204, 1600, 1861, 2031
PkrI	GCNGC	7 cut(s)	295, 649, 961, 1197, 1492, 1561, 2046
PleI	GAGTC	1 cut(s)	799
PpsI	GAGTC	1 cut(s)	799
PscI	ACATGT	2 cut(s)	441, 1047
PshAI	GACNNNNGTC	1 cut(s)	238
PspN4I	GGNNCC	5 cut(s)	259, 730, 1460, 1826, 1991
PspPI	GGNCC	3 cut(s)	72, 257, 1990
PsuI	RGATCY	1 cut(s)	1458
RsaI	GTAC	3 cut(s)	308, 446, 1760
RsaNI	GTAC	3 cut(s)	307, 445, 1759
RseI	CAYNNNNRTG	2 cut(s)	440, 1830
SacII	CCGCGG	1 cut(s)	363
SaqAI	TTAA	6 cut(s)	39, 404, 419, 696, 1241, 1605
SatI	GCNGC	7 cut(s)	294, 648, 960, 1196, 1491, 1560, 2045
Sau3AI	GATC	2 cut(s)	1176, 1458
Sau96I	GGNCC	3 cut(s)	72, 257, 1990
SchI	GAGTC	1 cut(s)	800
ScrFI	CCNGG	1 cut(s)	838
SduI	GDGCHC	3 cut(s)	358, 1311, 2064
SfaNI	GCATC	3 cut(s)	292, 576, 763
SfcI	CTRYAG	1 cut(s)	1249
Sfr303I	CCGCGG	1 cut(s)	363
SfuI	TTCGAA	2 cut(s)	115, 220
SgrBI	CCGCGG	1 cut(s)	363
SinI	GGWCC	3 cut(s)	72, 257, 1990
SmiMI	CAYNNNNRTG	2 cut(s)	440, 1830
SmlI	CTYRAG	1 cut(s)	181
SmoI	CTYRAG	1 cut(s)	181
SpeI	ACTAGT	1 cut(s)	1264
SphI	GCATGC	2 cut(s)	686, 989
Sse9I	AATT	8 cut(s)	27, 336, 614, 1002, 1404, 1701, 1721, 1742
SseBI	AGGCCT	1 cut(s)	374
SsiI	CCGC	7 cut(s)	293, 360, 362, 732, 2067, 2151, 2156
SspI	AATATT	1 cut(s)	1286
SspMI	CTAG	4 cut(s)	1149, 1166, 1265, 1698
StuI	AGGCCT	1 cut(s)	374
StyD4I	CCNGG	1 cut(s)	836
StyI	CCWWGG	1 cut(s)	1462
TaaI	ACNGT	8 cut(s)	134, 267, 280, 622, 925, 1085, 1832, 1949
TaiI	ACGT	2 cut(s)	397, 2088
TaqI	TCGA	6 cut(s)	115, 170, 220, 486, 827, 1985
TaqII	GACCGA	2 cut(s)	143, 1353
TasI	AATT	8 cut(s)	27, 336, 614, 1002, 1404, 1701, 1721, 1742
TatI	WGTACW	1 cut(s)	444
TauI	GCSGC	1 cut(s)	296
TfiI	GAWTC	4 cut(s)	204, 1600, 1861, 2031
Tru1I	TTAA	6 cut(s)	39, 404, 419, 696, 1241, 1605
Tru9I	TTAA	6 cut(s)	39, 404, 419, 696, 1241, 1605
TscAI	CASTG	3 cut(s)	616, 1090, 1837
TseFI	GTSAC	4 cut(s)	134, 534, 1317, 1735
TseI	GCWGC	6 cut(s)	647, 959, 1195, 1490, 1559, 2044
Tsp45I	GTSAC	4 cut(s)	134, 534, 1317, 1735
TspGWI	ACGGA	1 cut(s)	1398
TspRI	CASTG	3 cut(s)	616, 1090, 1837
VneI	GTGCAC	1 cut(s)	354
VpaK11BI	GGWCC	3 cut(s)	72, 257, 1990
XagI	CCTNNNNNAGG	1 cut(s)	184
XapI	RAATTY	3 cut(s)	336, 614, 1404
XceI	RCATGY	6 cut(s)	445, 686, 989, 1051, 1157, 1697
XcmI	CCANNNNNNNNNTGG	2 cut(s)	146, 2013
XmnI	GAANNNNTTC	1 cut(s)	1286
XspI	CTAG	4 cut(s)	1149, 1166, 1265, 1698
Zsp2I	ATGCAT	1 cut(s)	1346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.