pycom11g00740

K homology RNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0003736
Physical Location & Seq
Forward (+)
535512 .. 535835
324 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 324 bp
ATGGTATCTTCTATAAACCATTCTATTGCAGCACCAAGCTTTACTTTTATTCCACGACCTCAAGCGGGACTTCCTTATACTTCTCTGCAAGCAAGAGTTCCAAGTTCTGTTTCTGGAAGTGTTCCAAGTTTTGCTCCCTTAGAACCATCAATGATGACGGCTCCAAGCCCTGGCATTTTAACTTTTCAGCCTCACGGACCACAGAATCCATCCTTCCAAACGGTTCCCCAGTCAAGCAGTCACTTCACACCACAGAATGCTTCTCTCGCCAGACCAATGTTGCCACCTGCAGCACCTCAGGCACCGTCTTGCCAGTTTCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KH_1 SF1-HH

Protein Analysis

108

Amino Acids

11.19

Weight (kDa)

9.49

Isoelectric Point (pI)

80.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 295
Acc36I ACCTGC 1 cut(s) 295
AccB1I GGYRCC 1 cut(s) 301
AccB7I CCANNNNNTGG 1 cut(s) 170
AciI CCGC 1 cut(s) 65
AfiI CCNNNNNNNGG 2 cut(s) 65, 170
AjnI CCWGG 1 cut(s) 169
AjuI GAANNNNNNNTTGG 2 cut(s) 94, 126
AluBI AGCT 1 cut(s) 39
AluI AGCT 1 cut(s) 39
ApeKI GCWGC 2 cut(s) 29, 290
AspS9I GGNCC 1 cut(s) 197
AvaII GGWCC 1 cut(s) 197
AxyI CCTNAGG 1 cut(s) 297
BanI GGYRCC 1 cut(s) 301
BbvI GCAGC 2 cut(s) 41, 302
BccI CCATC 2 cut(s) 154, 217
BceAI ACGGC 1 cut(s) 174
BciT130I CCWGG 1 cut(s) 171
BfmI CTRYAG 1 cut(s) 288
BfuAI ACCTGC 1 cut(s) 295
BisI GCNGC 2 cut(s) 30, 291
BlsI GCNGC 2 cut(s) 31, 292
Bme1390I CCNGG 1 cut(s) 171
Bme18I GGWCC 1 cut(s) 197
BmgT120I GGNCC 1 cut(s) 197
BmiI GGNNCC 3 cut(s) 162, 225, 303
BmrFI CCNGG 1 cut(s) 171
BmrI ACTGGG 1 cut(s) 223
BmuI ACTGGG 1 cut(s) 223
BpuEI CTTGAG 1 cut(s) 45
BsaJI CCNNGG 1 cut(s) 169
Bsc4I CCNNNNNNNGG 2 cut(s) 65, 170
Bse1I ACTGG 2 cut(s) 229, 313
Bse21I CCTNAGG 1 cut(s) 297
BseBI CCWGG 1 cut(s) 171
BseDI CCNNGG 1 cut(s) 169
BseGI GGATG 1 cut(s) 209
BseLI CCNNNNNNNGG 2 cut(s) 65, 170
BseMII CTCAG 1 cut(s) 311
BseNI ACTGG 2 cut(s) 229, 313
BseXI GCAGC 2 cut(s) 41, 302
BshNI GGYRCC 1 cut(s) 301
BslFI GGGAC 1 cut(s) 81
BslI CCNNNNNNNGG 2 cut(s) 65, 170
BsmFI GGGAC 1 cut(s) 81
BsmI GAATGC 1 cut(s) 262
BspACI CCGC 1 cut(s) 65
BspCNI CTCAG 1 cut(s) 310
BspLI GGNNCC 3 cut(s) 162, 225, 303
BspMAI CTGCAG 1 cut(s) 292
BspMI ACCTGC 1 cut(s) 295
BspT107I GGYRCC 1 cut(s) 301
BsrI ACTGG 2 cut(s) 229, 313
BssECI CCNNGG 1 cut(s) 169
Bst2UI CCWGG 1 cut(s) 171
Bst4CI ACNGT 2 cut(s) 223, 306
BstC8I GCNNGC 1 cut(s) 90
BstDEI CTNAG 3 cut(s) 139, 297, 321
BstF5I GGATG 1 cut(s) 209
BstMWI GCNNNNNNNGC 2 cut(s) 266, 299
BstNI CCWGG 1 cut(s) 171
BstSCI CCNGG 1 cut(s) 169
BstSFI CTRYAG 1 cut(s) 288
BstV1I GCAGC 2 cut(s) 41, 302
Bsu36I CCTNAGG 1 cut(s) 297
BtsCI GGATG 1 cut(s) 209
BveI ACCTGC 1 cut(s) 295
Cac8I GCNNGC 1 cut(s) 90
Cfr13I GGNCC 1 cut(s) 197
CviJI RGCY 4 cut(s) 39, 161, 168, 190
CviKI_1 RGCY 4 cut(s) 39, 161, 168, 190
DdeI CTNAG 3 cut(s) 139, 297, 321
Eco47I GGWCC 1 cut(s) 197
Eco81I CCTNAGG 1 cut(s) 297
EcoRII CCWGG 1 cut(s) 169
FaiI YATR 2 cut(s) 14, 78
FalI AAGNNNNNCTT 4 cut(s) 28, 60, 54, 86
FaqI GGGAC 1 cut(s) 81
FauI CCCGC 1 cut(s) 58
Fnu4HI GCNGC 2 cut(s) 30, 291
FokI GGATG 1 cut(s) 196
Fsp4HI GCNGC 2 cut(s) 30, 291
GluI GCNGC 2 cut(s) 30, 291
HindIII AAGCTT 1 cut(s) 37
HinfI GANTC 1 cut(s) 205
Hpy188III TCNNGA 1 cut(s) 114
HpyAV CCTTC 1 cut(s) 223
HpyCH4III ACNGT 2 cut(s) 223, 306
HpyCH4V TGCA 3 cut(s) 29, 88, 290
HpyF10VI GCNNNNNNNGC 2 cut(s) 266, 299
HpyF3I CTNAG 3 cut(s) 139, 297, 321
LmnI GCTCC 2 cut(s) 139, 166
LpnPI CCDG 7 cut(s) 99, 156, 183, 242, 283, 284, 300
Lsp1109I GCAGC 2 cut(s) 41, 302
MaeIII GTNAC 1 cut(s) 239
MnlI CCTC 3 cut(s) 69, 201, 306
MseI TTAA 1 cut(s) 179
MspR9I CCNGG 1 cut(s) 171
Mva1269I GAATGC 1 cut(s) 262
MvaI CCWGG 1 cut(s) 171
MwoI GCNNNNNNNGC 2 cut(s) 266, 299
NlaIV GGNNCC 3 cut(s) 162, 225, 303
NmuCI GTSAC 1 cut(s) 239
PaqCI CACCTGC 1 cut(s) 295
PctI GAATGC 1 cut(s) 262
PfeI GAWTC 1 cut(s) 205
PflMI CCANNNNNTGG 1 cut(s) 170
PkrI GCNGC 2 cut(s) 31, 292
Psp6I CCWGG 1 cut(s) 169
PspGI CCWGG 1 cut(s) 169
PspN4I GGNNCC 3 cut(s) 162, 225, 303
PspPI GGNCC 1 cut(s) 197
PstI CTGCAG 1 cut(s) 292
SaqAI TTAA 1 cut(s) 179
SatI GCNGC 2 cut(s) 30, 291
Sau96I GGNCC 1 cut(s) 197
ScrFI CCNGG 1 cut(s) 171
SetI ASST 4 cut(s) 41, 61, 289, 298
SfcI CTRYAG 1 cut(s) 288
SinI GGWCC 1 cut(s) 197
SmlI CTYRAG 1 cut(s) 60
SmoI CTYRAG 1 cut(s) 60
SsiI CCGC 1 cut(s) 65
StyD4I CCNGG 1 cut(s) 169
TaaI ACNGT 2 cut(s) 223, 306
TfiI GAWTC 1 cut(s) 205
Tru1I TTAA 1 cut(s) 179
Tru9I TTAA 1 cut(s) 179
TseFI GTSAC 1 cut(s) 239
TseI GCWGC 2 cut(s) 29, 290
Tsp45I GTSAC 1 cut(s) 239
TspGWI ACGGA 1 cut(s) 210
Van91I CCANNNNNTGG 1 cut(s) 170
VpaK11BI GGWCC 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.