Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0003736

Physical Location & Seq

Genomic Coordinates Forward (+)

558990 .. 559790

Gene Structure 801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGCTGCCACCTCCAAATATATCAACAGTGAATATGGTATCTTCTATAAACCATCCTATTGCAGCACCAAGCTTTACTTTAATTCCACGGCCTCAAGCGGGACTTCCTTGTACATATCTATCAACATCTCCGCAAGCAAGAGTTCCAAGTTCTGTTTCTGGAAGTGTTCCAAGTTTTGCTCCCTTAAAAACCATCAATGATGACTGCTCCAAGCCCTGGCGTTTTCACTTGTCAGCCTCACGGACCACAGAATCCATCCTTCCACACGGTTCCCCAGTCAAGCAGTCACTTCTCAGCACAGAATGCTTCTCTCGCCAGACCAATGTTGCCACCTCCGGCACCTCAGGCACCATCTTGCCAGTTTCCTCAGCCAGGCAGTCAGGTGTTATGACGACATTGGGTCAGCATCCATCTACTCCAGTACCGTTCTACCTTGGACGCCAGTCGCCAATGAGACCGGCTAACTTCATTCCACCTCACCAGATTCCCAATTTGCCTTGTCCTCTGCCTCCAAGGCCAGGAAATCATATTCAAATTCAACAAAACTATCCTGCTCACTCAACTCAACCTGAGATCCCACGGCCTCAAAATCAACATTTGAGCAACAATCTCGCATTTGCCTCTGGCATGTCCGCGTCTTGTCCTAGAAGAGGACAGCAACTTTTTGATCCATTCTCGCCCACTACTGCGAATCAACAGCAGGGTGGTAATCCAGGAAAGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1 SF1-HH

Protein Analysis

242

Amino Acids

25.84

Weight (kDa)

10.16

Isoelectric Point (pI)

74.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003736)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G32940
fragaria_vesca	FvH4_3g44840 FvH4_3g44840 FvH4_3g44840 FvH4_3g44840 FvH4_3g44840 FvH4_3g44840 FvH4_3g44840 FvH4_3g44840
malus_domestica	MD03G1008800.v1.1 MD03G1008900.v1.1 MD03G1009300.v1.1 MD03G1009900.v1.1 MD03G1010000.v1.1 MD03G1010200.v1.1
prunus_persica	Prupe.6G010100_v2.0.a1
pyrus_communis	pycom03g00890 pycom03g00910 pycom11g00730 pycom11g00740 pycom11g00780
rosa_chinensis	RchiOBHm_Chr5g0081541
rosa_laevigata	RLG00000036946
rosa_multiflora	Rmu_co8214750.1_g000001 Rmu_co8505191.1_g000001 Rmu_sc0028842.1_g000001 Rmu_sc0038011.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002010
rosa_rugosa	Rorug05G0477200
rosa_samantha	Rh5AG528500 Rh5BG553300 Rh5CG576100 Rh5DG563400
rosa_wichuraiana	Rw5G049170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	338, 347
AccB7I	CCANNNNNTGG	1 cut(s)	216
AccII	CGCG	1 cut(s)	635
AciI	CCGC	3 cut(s)	98, 131, 633
AclWI	GGATC	2 cut(s)	568, 662
AcsI	RAATTY	1 cut(s)	534
AcyI	GRCGYC	1 cut(s)	439
AfaI	GTAC	2 cut(s)	112, 423
AfiI	CCNNNNNNNGG	5 cut(s)	98, 216, 372, 518, 650
AgsI	TTSAA	2 cut(s)	533, 539
AhdI	GACNNNNNGTC	1 cut(s)	399
AjnI	CCWGG	4 cut(s)	215, 371, 517, 712
AjuI	GAANNNNNNNTTGG	2 cut(s)	139, 171
AluBI	AGCT	1 cut(s)	72
AluI	AGCT	1 cut(s)	72
Alw26I	GTCTC	1 cut(s)	448
AlwI	GGATC	2 cut(s)	568, 662
AoxI	GGCC	3 cut(s)	89, 515, 581
ApeKI	GCWGC	2 cut(s)	4, 62
ApoI	RAATTY	1 cut(s)	534
AspS9I	GGNCC	1 cut(s)	243
AsuHPI	GGTGA	1 cut(s)	470
AvaII	GGWCC	1 cut(s)	243
AxyI	CCTNAGG	1 cut(s)	343
BaeI	ACNNNNGTAYC	2 cut(s)	405, 438
BanI	GGYRCC	2 cut(s)	338, 347
BbvCI	CCTCAGC	1 cut(s)	367
BbvI	GCAGC	1 cut(s)	74
BccI	CCATC	5 cut(s)	60, 200, 263, 359, 418
BceAI	ACGGC	2 cut(s)	104, 596
BcgI	CGANNNNNNTGC	2 cut(s)	592, 626
BciT130I	CCWGG	4 cut(s)	217, 373, 519, 714
BcoDI	GTCTC	1 cut(s)	448
BfaI	CTAG	1 cut(s)	645
BglI	GCCNNNNNGGC	1 cut(s)	514
BisI	GCNGC	2 cut(s)	5, 63
BlsI	GCNGC	2 cut(s)	6, 64
Bme1390I	CCNGG	4 cut(s)	217, 373, 519, 714
Bme18I	GGWCC	1 cut(s)	243
BmeRI	GACNNNNNGTC	1 cut(s)	399
BmgT120I	GGNCC	1 cut(s)	243
BmiI	GGNNCC	3 cut(s)	271, 340, 349
BmrFI	CCNGG	4 cut(s)	217, 373, 519, 714
BmrI	ACTGGG	1 cut(s)	269
BmsI	GCATC	1 cut(s)	415
BmuI	ACTGGG	1 cut(s)	269
BoxI	GACNNNNGTC	1 cut(s)	442
BpmI	CTGGAG	1 cut(s)	402
Bpu10I	CCTNAGC	1 cut(s)	367
BpuEI	CTTGAG	1 cut(s)	78
BsaHI	GRCGYC	1 cut(s)	439
BsaI	GGTCTC	1 cut(s)	448
BsaJI	CCNNGG	5 cut(s)	86, 215, 433, 512, 578
Bsc4I	CCNNNNNNNGG	5 cut(s)	98, 216, 372, 518, 650
Bse118I	RCCGGY	1 cut(s)	457
Bse1I	ACTGG	4 cut(s)	275, 359, 419, 442
Bse21I	CCTNAGG	1 cut(s)	343
BseBI	CCWGG	4 cut(s)	217, 373, 519, 714
BseDI	CCNNGG	5 cut(s)	86, 215, 433, 512, 578
BseGI	GGATG	3 cut(s)	52, 255, 406
BseLI	CCNNNNNNNGG	5 cut(s)	98, 216, 372, 518, 650
BseMII	CTCAG	4 cut(s)	307, 357, 381, 561
BseNI	ACTGG	4 cut(s)	275, 359, 419, 442
BseXI	GCAGC	1 cut(s)	74
Bsh1236I	CGCG	1 cut(s)	635
BshFI	GGCC	3 cut(s)	91, 517, 583
BshNI	GGYRCC	2 cut(s)	338, 347
BsiSI	CCGG	2 cut(s)	336, 458
BslFI	GGGAC	1 cut(s)	114
BslI	CCNNNNNNNGG	5 cut(s)	98, 216, 372, 518, 650
BsmAI	GTCTC	1 cut(s)	448
BsmFI	GGGAC	1 cut(s)	114
BsmI	GAATGC	1 cut(s)	308
BsnI	GGCC	3 cut(s)	91, 517, 583
Bso31I	GGTCTC	1 cut(s)	448
Bsp1407I	TGTACA	1 cut(s)	110
Bsp143I	GATC	2 cut(s)	573, 667
BspACI	CCGC	3 cut(s)	98, 131, 633
BspANI	GGCC	3 cut(s)	91, 517, 583
BspCNI	CTCAG	4 cut(s)	306, 356, 380, 562
BspFNI	CGCG	1 cut(s)	635
BspLI	GGNNCC	3 cut(s)	271, 340, 349
BspPI	GGATC	2 cut(s)	568, 662
BspT107I	GGYRCC	2 cut(s)	338, 347
BspTNI	GGTCTC	1 cut(s)	448
BsrFI	RCCGGY	1 cut(s)	457
BsrGI	TGTACA	1 cut(s)	110
BsrI	ACTGG	4 cut(s)	275, 359, 419, 442
BssAI	RCCGGY	1 cut(s)	457
BssECI	CCNNGG	5 cut(s)	86, 215, 433, 512, 578
BssMI	GATC	2 cut(s)	573, 667
BssNI	GRCGYC	1 cut(s)	439
BssT1I	CCWWGG	2 cut(s)	433, 512
Bst2UI	CCWGG	4 cut(s)	217, 373, 519, 714
Bst4CI	ACNGT	3 cut(s)	28, 269, 426
Bst6I	CTCTTC	1 cut(s)	643
BstACI	GRCGYC	1 cut(s)	439
BstAPI	GCANNNNNTGC	1 cut(s)	303
BstAUI	TGTACA	1 cut(s)	110
BstC8I	GCNNGC	1 cut(s)	135
BstDEI	CTNAG	4 cut(s)	293, 343, 367, 570
BstDSI	CCRYGG	2 cut(s)	86, 578
BstENI	CCTNNNNNAGG	2 cut(s)	370, 648
BstF5I	GGATG	3 cut(s)	52, 255, 406
BstFNI	CGCG	1 cut(s)	635
BstKTI	GATC	2 cut(s)	576, 670
BstMAI	GTCTC	1 cut(s)	448
BstMBI	GATC	2 cut(s)	573, 667
BstMWI	GCNNNNNNNGC	4 cut(s)	303, 312, 345, 514
BstNI	CCWGG	4 cut(s)	217, 373, 519, 714
BstNSI	RCATGY	1 cut(s)	631
BstPAI	GACNNNNGTC	1 cut(s)	442
BstSCI	CCNGG	4 cut(s)	215, 371, 517, 712
BstUI	CGCG	1 cut(s)	635
BstV1I	GCAGC	1 cut(s)	74
BstX2I	RGATCY	1 cut(s)	573
BstYI	RGATCY	1 cut(s)	573
Bsu36I	CCTNAGG	1 cut(s)	343
BsuRI	GGCC	3 cut(s)	91, 517, 583
BtgI	CCRYGG	2 cut(s)	86, 578
BtsCI	GGATG	3 cut(s)	52, 255, 406
BtsIMutI	CAGTG	1 cut(s)	33
Cac8I	GCNNGC	1 cut(s)	135
Cfr10I	RCCGGY	1 cut(s)	457
Cfr13I	GGNCC	1 cut(s)	243
CseI	GACGC	2 cut(s)	447, 624
Csp6I	GTAC	2 cut(s)	111, 422
CviAII	CATG	1 cut(s)	628
CviJI	RGCY	8 cut(s)	72, 91, 214, 236, 371, 461, 517, 583
CviKI_1	RGCY	8 cut(s)	72, 91, 214, 236, 371, 461, 517, 583
CviQI	GTAC	2 cut(s)	111, 422
DdeI	CTNAG	4 cut(s)	293, 343, 367, 570
DpnI	GATC	2 cut(s)	575, 669
DpnII	GATC	2 cut(s)	573, 667
DriI	GACNNNNNGTC	1 cut(s)	399
Eam1104I	CTCTTC	1 cut(s)	643
Eam1105I	GACNNNNNGTC	1 cut(s)	399
EarI	CTCTTC	1 cut(s)	643
Eco130I	CCWWGG	2 cut(s)	433, 512
Eco31I	GGTCTC	1 cut(s)	448
Eco47I	GGWCC	1 cut(s)	243
Eco81I	CCTNAGG	1 cut(s)	343
EcoNI	CCTNNNNNAGG	2 cut(s)	370, 648
EcoRII	CCWGG	4 cut(s)	215, 371, 517, 712
EcoT14I	CCWWGG	2 cut(s)	433, 512
ErhI	CCWWGG	2 cut(s)	433, 512
FaeI	CATG	1 cut(s)	631
FaiI	YATR	7 cut(s)	20, 35, 47, 115, 389, 528, 629
FalI	AAGNNNNNCTT	4 cut(s)	61, 93, 87, 119
FaqI	GGGAC	1 cut(s)	114
FatI	CATG	1 cut(s)	627
FauI	CCCGC	1 cut(s)	91
Fnu4HI	GCNGC	2 cut(s)	5, 63
FokI	GGATG	3 cut(s)	39, 242, 393
Fsp4HI	GCNGC	2 cut(s)	5, 63
FspBI	CTAG	1 cut(s)	645
GluI	GCNGC	2 cut(s)	5, 63
GsuI	CTGGAG	1 cut(s)	402
HaeIII	GGCC	3 cut(s)	91, 517, 583
HapII	CCGG	2 cut(s)	336, 458
HgaI	GACGC	2 cut(s)	447, 624
Hin1I	GRCGYC	1 cut(s)	439
Hin1II	CATG	1 cut(s)	631
HindIII	AAGCTT	1 cut(s)	70
HinfI	GANTC	3 cut(s)	251, 484, 691
HpaII	CCGG	2 cut(s)	336, 458
HphI	GGTGA	1 cut(s)	470
Hpy188III	TCNNGA	1 cut(s)	159
HpyAV	CCTTC	1 cut(s)	269
HpyCH4III	ACNGT	3 cut(s)	28, 269, 426
HpyCH4V	TGCA	1 cut(s)	62
HpyF10VI	GCNNNNNNNGC	4 cut(s)	303, 312, 345, 514
HpyF3I	CTNAG	4 cut(s)	293, 343, 367, 570
Hsp92I	GRCGYC	1 cut(s)	439
Hsp92II	CATG	1 cut(s)	631
Kzo9I	GATC	2 cut(s)	573, 667
LmnI	GCTCC	2 cut(s)	184, 212
Lsp1109I	GCAGC	1 cut(s)	74
LweI	GCATC	1 cut(s)	415
MaeI	CTAG	1 cut(s)	645
MaeIII	GTNAC	1 cut(s)	285
MalI	GATC	2 cut(s)	575, 669
MboI	GATC	2 cut(s)	573, 667
MboII	GAAGA	2 cut(s)	33, 660
MflI	RGATCY	1 cut(s)	573
MluCI	AATT	3 cut(s)	81, 490, 534
MseI	TTAA	2 cut(s)	80, 185
MspI	CCGG	2 cut(s)	336, 458
MspR9I	CCNGG	4 cut(s)	217, 373, 519, 714
Mva1269I	GAATGC	1 cut(s)	308
MvaI	CCWGG	4 cut(s)	217, 373, 519, 714
MvnI	CGCG	1 cut(s)	635
MwoI	GCNNNNNNNGC	4 cut(s)	303, 312, 345, 514
NdeII	GATC	2 cut(s)	573, 667
NlaIII	CATG	1 cut(s)	631
NlaIV	GGNNCC	3 cut(s)	271, 340, 349
NmuCI	GTSAC	1 cut(s)	285
NspI	RCATGY	1 cut(s)	631
PctI	GAATGC	1 cut(s)	308
PfeI	GAWTC	3 cut(s)	251, 484, 691
PflMI	CCANNNNNTGG	1 cut(s)	216
PfoI	TCCNGGA	1 cut(s)	712
PkrI	GCNGC	2 cut(s)	6, 64
PshAI	GACNNNNGTC	1 cut(s)	442
Psp6I	CCWGG	4 cut(s)	215, 371, 517, 712
PspGI	CCWGG	4 cut(s)	215, 371, 517, 712
PspN4I	GGNNCC	3 cut(s)	271, 340, 349
PspPI	GGNCC	1 cut(s)	243
PsuI	RGATCY	1 cut(s)	573
RsaI	GTAC	2 cut(s)	112, 423
RsaNI	GTAC	2 cut(s)	111, 422
SaqAI	TTAA	2 cut(s)	80, 185
SatI	GCNGC	2 cut(s)	5, 63
Sau3AI	GATC	2 cut(s)	573, 667
Sau96I	GGNCC	1 cut(s)	243
ScrFI	CCNGG	4 cut(s)	217, 373, 519, 714
SetI	ASST	8 cut(s)	13, 74, 335, 344, 385, 435, 478, 571
SfaNI	GCATC	1 cut(s)	415
SinI	GGWCC	1 cut(s)	243
SmlI	CTYRAG	1 cut(s)	93
SmoI	CTYRAG	1 cut(s)	93
Sse9I	AATT	3 cut(s)	81, 490, 534
SsiI	CCGC	3 cut(s)	98, 131, 633
SspMI	CTAG	1 cut(s)	645
StyD4I	CCNGG	4 cut(s)	215, 371, 517, 712
StyI	CCWWGG	2 cut(s)	433, 512
TaaI	ACNGT	3 cut(s)	28, 269, 426
TasI	AATT	3 cut(s)	81, 490, 534
TatI	WGTACW	1 cut(s)	110
TfiI	GAWTC	3 cut(s)	251, 484, 691
Tru1I	TTAA	2 cut(s)	80, 185
Tru9I	TTAA	2 cut(s)	80, 185
TscAI	CASTG	1 cut(s)	33
TseFI	GTSAC	1 cut(s)	285
TseI	GCWGC	2 cut(s)	4, 62
Tsp45I	GTSAC	1 cut(s)	285
TspDTI	ATGAA	1 cut(s)	457
TspGWI	ACGGA	1 cut(s)	256
TspRI	CASTG	1 cut(s)	33
Van91I	CCANNNNNTGG	1 cut(s)	216
VpaK11BI	GGWCC	1 cut(s)	243
XagI	CCTNNNNNAGG	2 cut(s)	370, 648
XapI	RAATTY	1 cut(s)	534
XceI	RCATGY	1 cut(s)	631
XspI	CTAG	1 cut(s)	645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.