pycom11g10210

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0004205
Physical Location & Seq
Forward (+)
8573602 .. 8573832
231 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 231 bp
ATGGAAACCGGTTCTTCGACACCCCAAGAGAAGAAAGCCGCAACTTGTCCTCCGAGGAGAGGCCAGATCAAGGCTAAGATTTTTGAAAGCTTGGTCAAAGCCGTCACCAACATGACCTCCAAACCTGGAGCTCAGGGGAAAAACGGAGGAGAAGGCAGTAGCCGCGGAGGTTCTGCCTCCACAACCTCACCACCAAGTGCCTACAGCTCTGATGCCAATTCCGACACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

77

Amino Acids

7.68

Weight (kDa)

9.58

Isoelectric Point (pI)

35.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 165
AciI CCGC 3 cut(s) 39, 163, 165
AcvI CACGTG 1 cut(s) 228
AdeI CACNNNGTG 1 cut(s) 197
AfiI CCNNNNNNNGG 2 cut(s) 59, 70
AflIII ACRYGT 1 cut(s) 225
AgeI ACCGGT 1 cut(s) 8
AgsI TTSAA 1 cut(s) 86
AjnI CCWGG 1 cut(s) 124
AluBI AGCT 3 cut(s) 90, 131, 207
AluI AGCT 3 cut(s) 90, 131, 207
Alw21I GWGCWC 1 cut(s) 133
AoxI GGCC 1 cut(s) 61
AsiGI ACCGGT 1 cut(s) 8
AsuHPI GGTGA 2 cut(s) 97, 180
BanII GRGCYC 1 cut(s) 133
BbrPI CACGTG 1 cut(s) 228
Bbv12I GWGCWC 1 cut(s) 133
BceAI ACGGC 1 cut(s) 86
BciT130I CCWGG 1 cut(s) 126
BfmI CTRYAG 1 cut(s) 202
BisI GCNGC 2 cut(s) 39, 163
BlsI GCNGC 2 cut(s) 40, 164
Bme1390I CCNGG 1 cut(s) 126
BmrFI CCNGG 1 cut(s) 126
BmsI GCATC 1 cut(s) 202
BpmI CTGGAG 1 cut(s) 147
Bpu10I CCTNAGC 1 cut(s) 132
BsaAI YACGTR 1 cut(s) 228
BsaJI CCNNGG 2 cut(s) 53, 163
BsaWI WCCGGW 1 cut(s) 8
BsaXI ACNNNNNCTCC 4 cut(s) 34, 64, 101, 131
Bsc4I CCNNNNNNNGG 2 cut(s) 59, 70
Bse118I RCCGGY 1 cut(s) 8
BseBI CCWGG 1 cut(s) 126
BseDI CCNNGG 2 cut(s) 53, 163
BseLI CCNNNNNNNGG 2 cut(s) 59, 70
BseMII CTCAG 1 cut(s) 146
BseRI GAGGAG 2 cut(s) 70, 162
Bsh1236I CGCG 1 cut(s) 165
BshFI GGCC 1 cut(s) 63
BshTI ACCGGT 1 cut(s) 8
BsiHKAI GWGCWC 1 cut(s) 133
BsiSI CCGG 1 cut(s) 9
BslI CCNNNNNNNGG 2 cut(s) 59, 70
BsnI GGCC 1 cut(s) 63
Bsp1286I GDGCHC 1 cut(s) 133
Bsp143I GATC 1 cut(s) 66
BspACI CCGC 3 cut(s) 39, 163, 165
BspANI GGCC 1 cut(s) 63
BspCNI CTCAG 1 cut(s) 145
BspFNI CGCG 1 cut(s) 165
BsrFI RCCGGY 1 cut(s) 8
BssAI RCCGGY 1 cut(s) 8
BssECI CCNNGG 2 cut(s) 53, 163
BssMI GATC 1 cut(s) 66
Bst2UI CCWGG 1 cut(s) 126
BstBAI YACGTR 1 cut(s) 228
BstDEI CTNAG 2 cut(s) 75, 132
BstDSI CCRYGG 1 cut(s) 163
BstFNI CGCG 1 cut(s) 165
BstKTI GATC 1 cut(s) 69
BstMBI GATC 1 cut(s) 66
BstMWI GCNNNNNNNGC 1 cut(s) 162
BstNI CCWGG 1 cut(s) 126
BstSCI CCNGG 1 cut(s) 124
BstSFI CTRYAG 1 cut(s) 202
BstUI CGCG 1 cut(s) 165
BsuRI GGCC 1 cut(s) 63
BtgI CCRYGG 1 cut(s) 163
Cfr10I RCCGGY 1 cut(s) 8
Cfr42I CCGCGG 1 cut(s) 166
CspAI ACCGGT 1 cut(s) 8
CviAII CATG 1 cut(s) 112
CviJI RGCY 8 cut(s) 38, 63, 74, 90, 101, 131, 162, 207
CviKI_1 RGCY 8 cut(s) 38, 63, 74, 90, 101, 131, 162, 207
DdeI CTNAG 2 cut(s) 75, 132
DpnI GATC 1 cut(s) 68
DpnII GATC 1 cut(s) 66
DraIII CACNNNGTG 1 cut(s) 197
Ecl136II GAGCTC 1 cut(s) 131
Eco24I GRGCYC 1 cut(s) 133
Eco53kI GAGCTC 1 cut(s) 131
Eco72I CACGTG 1 cut(s) 228
EcoICRI GAGCTC 1 cut(s) 131
EcoRII CCWGG 1 cut(s) 124
EcoT38I GRGCYC 1 cut(s) 133
FaeI CATG 1 cut(s) 115
FaiI YATR 1 cut(s) 113
FatI CATG 1 cut(s) 111
Fnu4HI GCNGC 2 cut(s) 39, 163
FriOI GRGCYC 1 cut(s) 133
Fsp4HI GCNGC 2 cut(s) 39, 163
GluI GCNGC 2 cut(s) 39, 163
GsuI CTGGAG 1 cut(s) 147
HaeIII GGCC 1 cut(s) 63
HapII CCGG 1 cut(s) 9
Hin1II CATG 1 cut(s) 115
HindIII AAGCTT 1 cut(s) 88
HpaII CCGG 1 cut(s) 9
HphI GGTGA 2 cut(s) 97, 180
Hpy188I TCNGA 3 cut(s) 54, 211, 223
HpyAV CCTTC 1 cut(s) 146
HpyCH4IV ACGT 1 cut(s) 227
HpyF10VI GCNNNNNNNGC 1 cut(s) 162
HpyF3I CTNAG 2 cut(s) 75, 132
HpySE526I ACGT 1 cut(s) 227
Hsp92II CATG 1 cut(s) 115
KspI CCGCGG 1 cut(s) 166
Kzo9I GATC 1 cut(s) 66
LmnI GCTCC 1 cut(s) 128
LpnPI CCDG 5 cut(s) 22, 77, 111, 119, 138
LweI GCATC 1 cut(s) 202
MaeII ACGT 1 cut(s) 227
MaeIII GTNAC 1 cut(s) 103
MalI GATC 1 cut(s) 68
MboI GATC 1 cut(s) 66
MboII GAAGA 2 cut(s) 6, 43
MhlI GDGCHC 1 cut(s) 133
MluCI AATT 1 cut(s) 217
MnlI CCTC 8 cut(s) 48, 53, 60, 127, 140, 161, 187, 196
MslI CAYNNNNRTG 1 cut(s) 110
MspA1I CMGCKG 1 cut(s) 165
MspI CCGG 1 cut(s) 9
MspR9I CCNGG 1 cut(s) 126
MvaI CCWGG 1 cut(s) 126
MvnI CGCG 1 cut(s) 165
MwoI GCNNNNNNNGC 1 cut(s) 162
NdeII GATC 1 cut(s) 66
NlaIII CATG 1 cut(s) 115
NmuCI GTSAC 1 cut(s) 103
PinAI ACCGGT 1 cut(s) 8
PkrI GCNGC 2 cut(s) 40, 164
PmaCI CACGTG 1 cut(s) 228
PmlI CACGTG 1 cut(s) 228
Ppu21I YACGTR 1 cut(s) 228
Psp124BI GAGCTC 1 cut(s) 133
Psp6I CCWGG 1 cut(s) 124
PspCI CACGTG 1 cut(s) 228
PspGI CCWGG 1 cut(s) 124
RseI CAYNNNNRTG 1 cut(s) 110
SacI GAGCTC 1 cut(s) 133
SacII CCGCGG 1 cut(s) 166
SatI GCNGC 2 cut(s) 39, 163
Sau3AI GATC 1 cut(s) 66
ScrFI CCNGG 1 cut(s) 126
SduI GDGCHC 1 cut(s) 133
SetI ASST 8 cut(s) 92, 119, 127, 133, 172, 188, 209, 230
SfaNI GCATC 1 cut(s) 202
SfcI CTRYAG 1 cut(s) 202
Sfr303I CCGCGG 1 cut(s) 166
SgrBI CCGCGG 1 cut(s) 166
SmiMI CAYNNNNRTG 1 cut(s) 110
Sse9I AATT 1 cut(s) 217
SsiI CCGC 3 cut(s) 39, 163, 165
SstI GAGCTC 1 cut(s) 133
StyD4I CCNGG 1 cut(s) 124
TaiI ACGT 1 cut(s) 230
TaqI TCGA 1 cut(s) 17
TasI AATT 1 cut(s) 217
TauI GCSGC 2 cut(s) 41, 165
TseFI GTSAC 1 cut(s) 103
Tsp45I GTSAC 1 cut(s) 103
TspGWI ACGGA 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.