Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0005429

Physical Location & Seq

Genomic Coordinates Forward (+)

11305533 .. 11307112

Gene Structure 1580 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGTTCCCAACGGATTGGAGATTCCTAGGCTTAGGGATCGGCTAGTCAAAATCATTACCAATTACAGGACCGAAACATCTCTAAGACACGGGTGCAATGATATTCTTAAGGCTGATATCGTCAACCTCTTGGGCAAATACTACAAAGAGGCAACACATGGAATTTACTTGAGCAATGAAGAAGATGAGGCACGGTCAAGGAGAAATGATAGTAGGGCTTCTCAGGTGATTGAGAAATCGGTAGGTGTGAGAAGTATGGAGGTTAAATCAAAACCTAGGGGCGGTGCAAGGTGTTGCATGTGTTTCGATCCTTTTTCCATTCAAAATGTTAATGTCATTGTTTTCTTTTGCTGTCATGCTTATCACGTGACTTGTCTTATGGATTCCACCTATACGAGTGAAATGAAAATCAGTGTGGCCAATCCTAGCGAGAGAGTAGACGATTATGGGTATGGTGATAGTTATGGTGACGATGATGGTGATGATGATGATGACACCCAATCGGGTGGCTCTCGCATGCGTTGTATCTTATGTACTACTGCTGCTAGTGGGGTGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006996 GO:0007033 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0019899 GO:0030897 GO:0031338 GO:0031410 GO:0031982 GO:0032879 GO:0032991 GO:0033036 GO:0033043 GO:0033263 GO:0033365 GO:0034613 GO:0035542 GO:0042144 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043254 GO:0044087 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048284 GO:0050789 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060627 GO:0061024 GO:0061025 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0097576 GO:0097708 GO:0098796 GO:0099023

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Clathrin

Protein Analysis

187

Amino Acids

20.79

Weight (kDa)

5.59

Isoelectric Point (pI)

38.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_Vps41	PF23555	97 - 136	3.6e-14	Vps41 C-terminal RING finger domain
zf_RING_Vps8	PF23412	98 - 136	4.2e-06	Vps8 RING zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08190
fragaria_vesca	FvH4_3g30370 FvH4_3g30370 FvH4_3g30370 FvH4_3g30370 FvH4_3g30370
malus_domestica	MD03G1129800.v1.1 MD11G1151700.v1.1
prunus_persica	Prupe.6G114800_v2.0.a1 Prupe.6G114800_v2.0.a1
pyrus_communis	pycom11g12380 pycom11g12390
rosa_chinensis	RchiOBHm_Chr5g0056311
rosa_laevigata	RLG00000035067 RLG00000035070 RLG00000035077 RLG00000035080 RLG00000035082
rosa_multiflora	Rmu_sc0000680.1_g000003
rosa_roxburghii	Rroxscaffold_1G00024010
rosa_rugosa	Rorug05G0298600 Rorug05G0298700 Rorug05G0298800
rosa_samantha	Rh5AG369600 Rh5BG380500 Rh5CG404000 Rh5DG393600
rosa_wichuraiana	Rw0G004390 Rw0G012630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	438
AciI	CCGC	1 cut(s)	282
AclWI	GGATC	2 cut(s)	45, 302
AcoI	YGGCCR	1 cut(s)	417
AcsI	RAATTY	1 cut(s)	162
AcvI	CACGTG	1 cut(s)	367
AfaI	GTAC	1 cut(s)	535
AfiI	CCNNNNNNNGG	2 cut(s)	66, 281
AflII	CTTAAG	1 cut(s)	107
AgsI	TTSAA	1 cut(s)	323
AlwI	GGATC	2 cut(s)	45, 302
AoxI	GGCC	1 cut(s)	417
ApeKI	GCWGC	1 cut(s)	542
ApoI	RAATTY	1 cut(s)	162
AspA2I	CCTAGG	2 cut(s)	26, 275
AspS9I	GGNCC	1 cut(s)	69
AsuHPI	GGTGA	4 cut(s)	238, 467, 479, 491
AvaII	GGWCC	1 cut(s)	69
AvrII	CCTAGG	2 cut(s)	26, 275
BalI	TGGCCA	1 cut(s)	419
BbrPI	CACGTG	1 cut(s)	367
BbvI	GCAGC	1 cut(s)	529
BccI	CCATC	1 cut(s)	470
BcgI	CGANNNNNNTGC	2 cut(s)	286, 320
BfaI	CTAG	5 cut(s)	27, 44, 276, 426, 546
BfrI	CTTAAG	1 cut(s)	107
BisI	GCNGC	1 cut(s)	543
BlnI	CCTAGG	2 cut(s)	26, 275
BlsI	GCNGC	1 cut(s)	544
Bme18I	GGWCC	1 cut(s)	69
BmgT120I	GGNCC	1 cut(s)	69
BmiI	GGNNCC	1 cut(s)	6
Bpu10I	CCTNAGC	1 cut(s)	32
BpuEI	CTTGAG	1 cut(s)	190
BsaAI	YACGTR	1 cut(s)	367
BsaJI	CCNNGG	2 cut(s)	26, 275
Bsc4I	CCNNNNNNNGG	2 cut(s)	66, 281
Bse3DI	GCAATG	2 cut(s)	103, 181
BseDI	CCNNGG	2 cut(s)	26, 275
BseLI	CCNNNNNNNGG	2 cut(s)	66, 281
BseMI	GCAATG	2 cut(s)	103, 181
BseMII	CTCAG	1 cut(s)	236
BseXI	GCAGC	1 cut(s)	529
BshFI	GGCC	1 cut(s)	419
BslI	CCNNNNNNNGG	2 cut(s)	66, 281
BsnI	GGCC	1 cut(s)	419
Bsp143I	GATC	2 cut(s)	37, 307
BspACI	CCGC	1 cut(s)	282
BspANI	GGCC	1 cut(s)	419
BspCNI	CTCAG	1 cut(s)	235
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	2 cut(s)	45, 302
BspTI	CTTAAG	1 cut(s)	107
BsrDI	GCAATG	2 cut(s)	103, 181
BssECI	CCNNGG	2 cut(s)	26, 275
BssMI	GATC	2 cut(s)	37, 307
BssT1I	CCWWGG	2 cut(s)	26, 275
Bst4CI	ACNGT	1 cut(s)	195
BstAFI	CTTAAG	1 cut(s)	107
BstBAI	YACGTR	1 cut(s)	367
BstC8I	GCNNGC	1 cut(s)	518
BstDEI	CTNAG	3 cut(s)	32, 83, 222
BstKTI	GATC	2 cut(s)	40, 310
BstMBI	GATC	2 cut(s)	37, 307
BstNSI	RCATGY	2 cut(s)	301, 520
BstV1I	GCAGC	1 cut(s)	529
BstXI	CCANNNNNNTGG	2 cut(s)	16, 506
BsuRI	GGCC	1 cut(s)	419
BtsIMutI	CAGTG	1 cut(s)	418
Cac8I	GCNNGC	1 cut(s)	518
Cfr13I	GGNCC	1 cut(s)	69
Csp6I	GTAC	1 cut(s)	534
CviAII	CATG	4 cut(s)	158, 298, 356, 517
CviJI	RGCY	6 cut(s)	31, 43, 113, 218, 419, 510
CviKI_1	RGCY	6 cut(s)	31, 43, 113, 218, 419, 510
CviQI	GTAC	1 cut(s)	534
DdeI	CTNAG	3 cut(s)	32, 83, 222
DpnI	GATC	2 cut(s)	39, 309
DpnII	GATC	2 cut(s)	37, 307
EaeI	YGGCCR	1 cut(s)	417
Eco130I	CCWWGG	2 cut(s)	26, 275
Eco32I	GATATC	1 cut(s)	118
Eco47I	GGWCC	1 cut(s)	69
Eco72I	CACGTG	1 cut(s)	367
EcoRV	GATATC	1 cut(s)	118
EcoT14I	CCWWGG	2 cut(s)	26, 275
ErhI	CCWWGG	2 cut(s)	26, 275
FaeI	CATG	4 cut(s)	161, 301, 359, 520
FatI	CATG	4 cut(s)	157, 297, 355, 516
FblI	GTMKAC	1 cut(s)	438
Fnu4HI	GCNGC	1 cut(s)	543
Fsp4HI	GCNGC	1 cut(s)	543
FspBI	CTAG	5 cut(s)	27, 44, 276, 426, 546
GluI	GCNGC	1 cut(s)	543
HaeIII	GGCC	1 cut(s)	419
Hin1II	CATG	4 cut(s)	161, 301, 359, 520
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HinfI	GANTC	2 cut(s)	22, 383
HphI	GGTGA	4 cut(s)	238, 467, 479, 491
Hpy166II	GTNNAC	2 cut(s)	124, 439
Hpy8I	GTNNAC	2 cut(s)	124, 439
HpyCH4III	ACNGT	1 cut(s)	195
HpyCH4IV	ACGT	1 cut(s)	366
HpyCH4V	TGCA	3 cut(s)	96, 287, 297
HpyF3I	CTNAG	3 cut(s)	32, 83, 222
HpySE526I	ACGT	1 cut(s)	366
Hsp92II	CATG	4 cut(s)	161, 301, 359, 520
Kzo9I	GATC	2 cut(s)	37, 307
LpnPI	CCDG	2 cut(s)	52, 209
Lsp1109I	GCAGC	1 cut(s)	529
MaeI	CTAG	5 cut(s)	27, 44, 276, 426, 546
MaeII	ACGT	1 cut(s)	366
MaeIII	GTNAC	2 cut(s)	367, 467
MalI	GATC	2 cut(s)	39, 309
MboI	GATC	2 cut(s)	37, 307
MboII	GAAGA	2 cut(s)	191, 194
MlsI	TGGCCA	1 cut(s)	419
MluCI	AATT	2 cut(s)	61, 162
MluNI	TGGCCA	1 cut(s)	419
MnlI	CCTC	4 cut(s)	137, 142, 181, 253
Mox20I	TGGCCA	1 cut(s)	419
MscI	TGGCCA	1 cut(s)	419
MseI	TTAA	3 cut(s)	108, 264, 330
Msp20I	TGGCCA	1 cut(s)	419
MspCI	CTTAAG	1 cut(s)	107
NdeII	GATC	2 cut(s)	37, 307
NlaIII	CATG	4 cut(s)	161, 301, 359, 520
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	2 cut(s)	367, 467
NspI	RCATGY	2 cut(s)	301, 520
PaeI	GCATGC	1 cut(s)	520
PfeI	GAWTC	2 cut(s)	22, 383
PkrI	GCNGC	1 cut(s)	544
PmaCI	CACGTG	1 cut(s)	367
PmlI	CACGTG	1 cut(s)	367
Ppu21I	YACGTR	1 cut(s)	367
PspCI	CACGTG	1 cut(s)	367
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	69
RsaI	GTAC	1 cut(s)	535
RsaNI	GTAC	1 cut(s)	534
SaqAI	TTAA	3 cut(s)	108, 264, 330
SatI	GCNGC	1 cut(s)	543
Sau3AI	GATC	2 cut(s)	37, 307
Sau96I	GGNCC	1 cut(s)	69
SetI	ASST	8 cut(s)	129, 228, 247, 264, 277, 293, 369, 392
SinI	GGWCC	1 cut(s)	69
SmlI	CTYRAG	2 cut(s)	107, 169
SmoI	CTYRAG	2 cut(s)	107, 169
SphI	GCATGC	1 cut(s)	520
Sse9I	AATT	2 cut(s)	61, 162
SsiI	CCGC	1 cut(s)	282
SspMI	CTAG	5 cut(s)	27, 44, 276, 426, 546
StyI	CCWWGG	2 cut(s)	26, 275
TaaI	ACNGT	1 cut(s)	195
TaiI	ACGT	1 cut(s)	369
TaqI	TCGA	1 cut(s)	306
TaqII	GACCGA	1 cut(s)	86
TasI	AATT	2 cut(s)	61, 162
TatI	WGTACW	1 cut(s)	533
TfiI	GAWTC	2 cut(s)	22, 383
Tru1I	TTAA	3 cut(s)	108, 264, 330
Tru9I	TTAA	3 cut(s)	108, 264, 330
TscAI	CASTG	1 cut(s)	418
TseFI	GTSAC	2 cut(s)	367, 467
TseI	GCWGC	1 cut(s)	542
Tsp45I	GTSAC	2 cut(s)	367, 467
TspDTI	ATGAA	2 cut(s)	192, 419
TspGWI	ACGGA	1 cut(s)	27
TspRI	CASTG	1 cut(s)	418
Vha464I	CTTAAG	1 cut(s)	107
VpaK11BI	GGWCC	1 cut(s)	69
XapI	RAATTY	1 cut(s)	162
XceI	RCATGY	2 cut(s)	301, 520
XmaJI	CCTAGG	2 cut(s)	26, 275
XmiI	GTMKAC	1 cut(s)	438
XspI	CTAG	5 cut(s)	27, 44, 276, 426, 546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.