Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0003128

Physical Location & Seq

Genomic Coordinates Forward (+)

11510514 .. 11511616

Gene Structure 1103 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGAGATACAGTACAATAAATAAAATCACCAATCCCCTGCTACCACCCCAGATCCTCATCCCAGCACCCTGTAAAGAGGAGAGTAGCTCACTGTCTTATTCCGTCCCTCCCAATCACATTTCCCACTCCCTTTATGTACGTTCTGCCCTCTCATTTTGTTCTTCCATATTTTCCTTCCCTTCTTCCCGAGAAACTCTCTCATCCTCGCACCACGCAATTTTCTCACCGCACCCACAGAACCAAAACGTCGTCGTTGAGAATGGCGTCGTCGGCGAGGGTAGATCTAGACGGCAACCCGATAAAGCCCATTACGATATGTATGATCGGAGTCGGAGACGCCGCACAAGGTCCTGGCTCTGGACGTCTACAATGACAAGATCGAGCACCTGCTCGAGCCCGAGAACGCGCACCCCTGGTCCGATCGTATCCAGTTCCACCGACTCAACATCAAGCAGGACTCGCGCCTCGAAGGCCTCATCAAAATGGCAGATCTGTTTACGATTAATCTGGCGGCCATCTGTACTCCGGCAGACTACAACACCCGCCCGCTCGACACCATCTACAGCAACTTCATCGATGCTCTGCCGGTGGTGGGTGAAGTACTGCTCCGAAAACAACAAGCGTTTGATTCACTTTTCTACGTGTGAAGTGTATGGGAAAACCATTGGAAGCTATCTTCCTAAAGATAGCCCTCTTCGTCAGGTACCCCCTTTGTCCCTTTCTTTTCAATTTTCTTTTATGTATTTGCTTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009225 GO:0009226 GO:0009987 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019438 GO:0034641 GO:0034654 GO:0036094 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048037 GO:0048040 GO:0048046 GO:0050662 GO:0051287 GO:0055086 GO:0071704 GO:0097159 GO:1901135 GO:1901137 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Epimerase

Protein Analysis

252

Amino Acids

28.55

Weight (kDa)

10.32

Isoelectric Point (pI)

78.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08200
fragaria_vesca	FvH4_3g30060 FvH4_3g30060 FvH4_3g30060 FvH4_3g30060
malus_domestica	MD03G1131500.v1.1 MD03G1131900.v1.1 MD03G1161900.v1.1 MD11G1154500.v1.1 MD11G1215900.v1.1 MD16G1216600.v1.1 MD16G1216800.v1.1
prunus_persica	Prupe.6G116900_v2.0.a1 Prupe.6G116900_v2.0.a1 Prupe.6G116900_v2.0.a1
pyrus_communis	pycom11g12600 pycom11g12610
rosa_chinensis	RchiOBHm_Chr5g0055821
rosa_laevigata	RLG00000002609 RLG00000035011
rosa_multiflora	Rmu_sc0003306.1_g000005 Rmu_sc0003500.1_g000032 Rmu_sc0003500.1_g000033 Rmu_sc0007802.1_g000009
rosa_roxburghii	Rroxscaffold_1G00024520 Rroxscaffold_1G00052150
rosa_rugosa	Rorug05G0295000
rosa_samantha	Rh5AG192800 Rh5AG365900 Rh5BG190400 Rh5BG376600 Rh5CG399600 Rh5DG192100 Rh5DG389500 Rh5DG389600 Rh7BG106200
rosa_wichuraiana	Rw5G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	395
AatII	GACGTC	1 cut(s)	365
Acc36I	ACCTGC	1 cut(s)	395
Acc65I	GGTACC	1 cut(s)	703
AccB1I	GGYRCC	1 cut(s)	703
AccBSI	CCGCTC	1 cut(s)	549
AccI	GTMKAC	1 cut(s)	365
AccII	CGCG	2 cut(s)	406, 462
AciI	CCGC	5 cut(s)	227, 340, 511, 543, 547
AclWI	GGATC	1 cut(s)	46
AcoI	YGGCCR	1 cut(s)	512
AcyI	GRCGYC	3 cut(s)	264, 337, 362
AfaI	GTAC	5 cut(s)	13, 138, 522, 602, 705
AfiI	CCNNNNNNNGG	2 cut(s)	357, 592
AflIII	ACRYGT	1 cut(s)	641
AgsI	TTSAA	1 cut(s)	728
AjnI	CCWGG	2 cut(s)	350, 412
AluBI	AGCT	2 cut(s)	87, 672
AluI	AGCT	2 cut(s)	87, 672
Alw21I	GWGCWC	1 cut(s)	386
Alw26I	GTCTC	1 cut(s)	328
AlwI	GGATC	1 cut(s)	46
Ama87I	CYCGRG	3 cut(s)	186, 391, 397
AoxI	GGCC	2 cut(s)	471, 512
AseI	ATTAAT	1 cut(s)	503
Asp718I	GGTACC	1 cut(s)	703
AspLEI	GCGC	2 cut(s)	408, 464
AspS9I	GGNCC	2 cut(s)	348, 416
AsuHPI	GGTGA	3 cut(s)	19, 216, 607
AvaI	CYCGRG	3 cut(s)	186, 391, 397
AvaII	GGWCC	2 cut(s)	348, 416
BanI	GGYRCC	1 cut(s)	703
BanII	GRGCYC	1 cut(s)	398
Bbv12I	GWGCWC	1 cut(s)	386
BccI	CCATC	2 cut(s)	523, 565
BceAI	ACGGC	1 cut(s)	305
BcgI	CGANNNNNNTGC	2 cut(s)	555, 589
BciT130I	CCWGG	2 cut(s)	352, 414
BciVI	GTATCC	1 cut(s)	436
BcoDI	GTCTC	1 cut(s)	328
BfaI	CTAG	2 cut(s)	285, 754
BfmI	CTRYAG	1 cut(s)	561
BfuAI	ACCTGC	1 cut(s)	395
BfuI	GTATCC	1 cut(s)	436
BglI	GCCNNNNNGGC	1 cut(s)	470
BglII	AGATCT	2 cut(s)	281, 489
BisI	GCNGC	2 cut(s)	340, 512
BlsI	GCNGC	2 cut(s)	341, 513
BmcAI	AGTACT	1 cut(s)	602
Bme1390I	CCNGG	2 cut(s)	352, 414
Bme18I	GGWCC	2 cut(s)	348, 416
BmeT110I	CYCGRG	3 cut(s)	186, 391, 397
BmgT120I	GGNCC	2 cut(s)	348, 416
BmiI	GGNNCC	1 cut(s)	705
BmrFI	CCNGG	2 cut(s)	352, 414
BmsI	GCATC	1 cut(s)	567
BplI	GAGNNNNNCTC	4 cut(s)	71, 103, 180, 212
Bsa29I	ATCGAT	1 cut(s)	575
BsaAI	YACGTR	1 cut(s)	642
BsaBI	GATNNNNATC	1 cut(s)	56
BsaHI	GRCGYC	3 cut(s)	264, 337, 362
BsaJI	CCNNGG	1 cut(s)	412
Bsc4I	CCNNNNNNNGG	2 cut(s)	357, 592
Bse118I	RCCGGY	1 cut(s)	585
Bse1I	ACTGG	1 cut(s)	429
Bse8I	GATNNNNATC	1 cut(s)	56
BseBI	CCWGG	2 cut(s)	352, 414
BseCI	ATCGAT	1 cut(s)	575
BseDI	CCNNGG	1 cut(s)	412
BseGI	GGATG	2 cut(s)	57, 200
BseJI	GATNNNNATC	1 cut(s)	56
BseLI	CCNNNNNNNGG	2 cut(s)	357, 592
BseNI	ACTGG	1 cut(s)	429
BseRI	GAGGAG	1 cut(s)	92
BseYI	CCCAGC	1 cut(s)	61
Bsh1236I	CGCG	2 cut(s)	406, 462
Bsh1285I	CGRYCG	1 cut(s)	423
BshFI	GGCC	2 cut(s)	473, 514
BshNI	GGYRCC	1 cut(s)	703
BshVI	ATCGAT	1 cut(s)	575
BsiEI	CGRYCG	1 cut(s)	423
BsiHKAI	GWGCWC	1 cut(s)	386
BsiHKCI	CYCGRG	3 cut(s)	186, 391, 397
BsiSI	CCGG	2 cut(s)	526, 586
BslFI	GGGAC	2 cut(s)	89, 700
BslI	CCNNNNNNNGG	2 cut(s)	357, 592
BsmAI	GTCTC	1 cut(s)	328
BsmBI	CGTCTC	1 cut(s)	328
BsmFI	GGGAC	2 cut(s)	89, 700
BsnI	GGCC	2 cut(s)	473, 514
BsoBI	CYCGRG	3 cut(s)	186, 391, 397
Bsp1286I	GDGCHC	2 cut(s)	386, 398
Bsp143I	GATC	6 cut(s)	51, 281, 322, 377, 420, 489
BspACI	CCGC	5 cut(s)	227, 340, 511, 543, 547
BspANI	GGCC	2 cut(s)	473, 514
BspDI	ATCGAT	1 cut(s)	575
BspFNI	CGCG	2 cut(s)	406, 462
BspLI	GGNNCC	1 cut(s)	705
BspMI	ACCTGC	1 cut(s)	395
BspPI	GGATC	1 cut(s)	46
BspT107I	GGYRCC	1 cut(s)	703
BsrBI	CCGCTC	1 cut(s)	549
BsrFI	RCCGGY	1 cut(s)	585
BsrI	ACTGG	1 cut(s)	429
BssAI	RCCGGY	1 cut(s)	585
BssECI	CCNNGG	1 cut(s)	412
BssMI	GATC	6 cut(s)	51, 281, 322, 377, 420, 489
BssNI	GRCGYC	3 cut(s)	264, 337, 362
Bst2UI	CCWGG	2 cut(s)	352, 414
Bst4CI	ACNGT	2 cut(s)	11, 93
Bst6I	CTCTTC	1 cut(s)	699
BstACI	GRCGYC	3 cut(s)	264, 337, 362
BstBAI	YACGTR	1 cut(s)	642
BstC8I	GCNNGC	1 cut(s)	547
BstF5I	GGATG	2 cut(s)	57, 200
BstFNI	CGCG	2 cut(s)	406, 462
BstHHI	GCGC	2 cut(s)	408, 464
BstKTI	GATC	6 cut(s)	54, 284, 325, 380, 423, 492
BstMAI	GTCTC	1 cut(s)	328
BstMBI	GATC	6 cut(s)	51, 281, 322, 377, 420, 489
BstMCI	CGRYCG	1 cut(s)	423
BstMWI	GCNNNNNNNGC	3 cut(s)	270, 459, 470
BstNI	CCWGG	2 cut(s)	352, 414
BstSCI	CCNGG	2 cut(s)	350, 412
BstSFI	CTRYAG	1 cut(s)	561
BstUI	CGCG	2 cut(s)	406, 462
BstX2I	RGATCY	3 cut(s)	51, 281, 489
BstYI	RGATCY	3 cut(s)	51, 281, 489
Bsu15I	ATCGAT	1 cut(s)	575
BsuI	GTATCC	1 cut(s)	436
BsuRI	GGCC	2 cut(s)	473, 514
BsuTUI	ATCGAT	1 cut(s)	575
BtsCI	GGATG	2 cut(s)	57, 200
BtsIMutI	CAGTG	1 cut(s)	89
BveI	ACCTGC	1 cut(s)	395
Cac8I	GCNNGC	1 cut(s)	547
CfoI	GCGC	2 cut(s)	408, 464
Cfr10I	RCCGGY	1 cut(s)	585
Cfr13I	GGNCC	2 cut(s)	348, 416
ClaI	ATCGAT	1 cut(s)	575
CseI	GACGC	2 cut(s)	253, 345
Csp6I	GTAC	5 cut(s)	12, 137, 521, 601, 704
CviJI	RGCY	8 cut(s)	87, 305, 355, 396, 473, 514, 672, 690
CviKI_1	RGCY	8 cut(s)	87, 305, 355, 396, 473, 514, 672, 690
CviQI	GTAC	5 cut(s)	12, 137, 521, 601, 704
DpnI	GATC	6 cut(s)	53, 283, 324, 379, 422, 491
DpnII	GATC	6 cut(s)	51, 281, 322, 377, 420, 489
EaeI	YGGCCR	1 cut(s)	512
Eam1104I	CTCTTC	1 cut(s)	699
EarI	CTCTTC	1 cut(s)	699
Eco147I	AGGCCT	1 cut(s)	473
Eco24I	GRGCYC	1 cut(s)	398
Eco47I	GGWCC	2 cut(s)	348, 416
Eco88I	CYCGRG	3 cut(s)	186, 391, 397
EcoO109I	RGGNCCY	1 cut(s)	348
EcoRII	CCWGG	2 cut(s)	350, 412
EcoT38I	GRGCYC	1 cut(s)	398
Esp3I	CGTCTC	1 cut(s)	328
FaiI	YATR	6 cut(s)	135, 167, 317, 321, 654, 740
FaqI	GGGAC	2 cut(s)	89, 700
FauI	CCCGC	2 cut(s)	550, 554
FblI	GTMKAC	1 cut(s)	365
Fnu4HI	GCNGC	2 cut(s)	340, 512
FokI	GGATG	2 cut(s)	44, 187
FriOI	GRGCYC	1 cut(s)	398
Fsp4HI	GCNGC	2 cut(s)	340, 512
FspBI	CTAG	2 cut(s)	285, 754
GlaI	GCGC	2 cut(s)	407, 463
GluI	GCNGC	2 cut(s)	340, 512
GsaI	CCCAGC	1 cut(s)	65
HaeIII	GGCC	2 cut(s)	473, 514
HapII	CCGG	2 cut(s)	526, 586
HgaI	GACGC	2 cut(s)	253, 345
HhaI	GCGC	2 cut(s)	408, 464
Hin1I	GRCGYC	3 cut(s)	264, 337, 362
Hin6I	GCGC	2 cut(s)	406, 462
HinP1I	GCGC	2 cut(s)	406, 462
HinfI	GANTC	4 cut(s)	328, 440, 457, 628
HpaII	CCGG	2 cut(s)	526, 586
HphI	GGTGA	3 cut(s)	19, 216, 607
Hpy166II	GTNNAC	2 cut(s)	366, 497
Hpy188I	TCNGA	4 cut(s)	327, 333, 420, 610
Hpy188III	TCNNGA	3 cut(s)	186, 285, 358
Hpy8I	GTNNAC	2 cut(s)	366, 497
Hpy99I	CGWCG	4 cut(s)	251, 254, 269, 272
HpyAV	CCTTC	3 cut(s)	184, 189, 463
HpyCH4III	ACNGT	2 cut(s)	11, 93
HpyCH4IV	ACGT	4 cut(s)	139, 246, 362, 641
HpyF10VI	GCNNNNNNNGC	3 cut(s)	270, 459, 470
HpySE526I	ACGT	4 cut(s)	139, 246, 362, 641
Hsp92I	GRCGYC	3 cut(s)	264, 337, 362
HspAI	GCGC	2 cut(s)	406, 462
KpnI	GGTACC	1 cut(s)	707
Kzo9I	GATC	6 cut(s)	51, 281, 322, 377, 420, 489
LmnI	GCTCC	1 cut(s)	611
LweI	GCATC	1 cut(s)	567
MaeI	CTAG	2 cut(s)	285, 754
MaeII	ACGT	4 cut(s)	139, 246, 362, 641
MalI	GATC	6 cut(s)	53, 283, 324, 379, 422, 491
MbiI	CCGCTC	1 cut(s)	549
MboI	GATC	6 cut(s)	51, 281, 322, 377, 420, 489
MboII	GAAGA	4 cut(s)	153, 174, 668, 686
MflI	RGATCY	3 cut(s)	51, 281, 489
MhlI	GDGCHC	2 cut(s)	386, 398
MluCI	AATT	2 cut(s)	216, 728
MlyI	GAGTC	3 cut(s)	337, 434, 451
MmeI	TCCRAC	1 cut(s)	311
MnlI	CCTC	9 cut(s)	65, 70, 117, 158, 214, 268, 475, 484, 702
MseI	TTAA	1 cut(s)	503
MslI	CAYNNNNRTG	1 cut(s)	481
MspI	CCGG	2 cut(s)	526, 586
MspR9I	CCNGG	2 cut(s)	352, 414
MvaI	CCWGG	2 cut(s)	352, 414
MvnI	CGCG	2 cut(s)	406, 462
MwoI	GCNNNNNNNGC	3 cut(s)	270, 459, 470
NdeII	GATC	6 cut(s)	51, 281, 322, 377, 420, 489
NlaIV	GGNNCC	1 cut(s)	705
PaeR7I	CTCGAG	1 cut(s)	391
PaqCI	CACCTGC	1 cut(s)	395
PceI	AGGCCT	1 cut(s)	473
PfeI	GAWTC	1 cut(s)	628
PkrI	GCNGC	2 cut(s)	341, 513
Ple19I	CGATCG	1 cut(s)	423
PleI	GAGTC	3 cut(s)	336, 434, 451
PpsI	GAGTC	3 cut(s)	336, 434, 451
Ppu21I	YACGTR	1 cut(s)	642
PpuMI	RGGWCCY	1 cut(s)	348
PshBI	ATTAAT	1 cut(s)	503
Psp5II	RGGWCCY	1 cut(s)	348
Psp6I	CCWGG	2 cut(s)	350, 412
PspFI	CCCAGC	1 cut(s)	61
PspGI	CCWGG	2 cut(s)	350, 412
PspN4I	GGNNCC	1 cut(s)	705
PspPI	GGNCC	2 cut(s)	348, 416
PspPPI	RGGWCCY	1 cut(s)	348
PspXI	VCTCGAGB	1 cut(s)	391
PsuI	RGATCY	3 cut(s)	51, 281, 489
PvuI	CGATCG	1 cut(s)	423
RsaI	GTAC	5 cut(s)	13, 138, 522, 602, 705
RsaNI	GTAC	5 cut(s)	12, 137, 521, 601, 704
RseI	CAYNNNNRTG	1 cut(s)	481
SaqAI	TTAA	1 cut(s)	503
SatI	GCNGC	2 cut(s)	340, 512
Sau3AI	GATC	6 cut(s)	51, 281, 322, 377, 420, 489
Sau96I	GGNCC	2 cut(s)	348, 416
ScaI	AGTACT	1 cut(s)	602
SchI	GAGTC	3 cut(s)	337, 434, 451
ScrFI	CCNGG	2 cut(s)	352, 414
SduI	GDGCHC	2 cut(s)	386, 398
SetI	ASST	9 cut(s)	89, 142, 249, 350, 365, 389, 644, 674, 705
SfaNI	GCATC	1 cut(s)	567
SfcI	CTRYAG	1 cut(s)	561
Sfr274I	CTCGAG	1 cut(s)	391
SinI	GGWCC	2 cut(s)	348, 416
SlaI	CTCGAG	1 cut(s)	391
SmiMI	CAYNNNNRTG	1 cut(s)	481
SmlI	CTYRAG	1 cut(s)	391
SmoI	CTYRAG	1 cut(s)	391
Sse9I	AATT	2 cut(s)	216, 728
SseBI	AGGCCT	1 cut(s)	473
SsiI	CCGC	5 cut(s)	227, 340, 511, 543, 547
SspMI	CTAG	2 cut(s)	285, 754
StuI	AGGCCT	1 cut(s)	473
StyD4I	CCNGG	2 cut(s)	350, 412
TaaI	ACNGT	2 cut(s)	11, 93
TaiI	ACGT	4 cut(s)	142, 249, 365, 644
TaqI	TCGA	5 cut(s)	380, 392, 467, 551, 575
TasI	AATT	2 cut(s)	216, 728
TatI	WGTACW	3 cut(s)	11, 520, 600
TauI	GCSGC	2 cut(s)	342, 514
TfiI	GAWTC	1 cut(s)	628
Tru1I	TTAA	1 cut(s)	503
Tru9I	TTAA	1 cut(s)	503
TscAI	CASTG	1 cut(s)	96
TspDTI	ATGAA	1 cut(s)	561
TspGWI	ACGGA	1 cut(s)	91
TspRI	CASTG	1 cut(s)	96
VpaK11BI	GGWCC	2 cut(s)	348, 416
VspI	ATTAAT	1 cut(s)	503
XbaI	TCTAGA	1 cut(s)	284
XhoI	CTCGAG	1 cut(s)	391
XmiI	GTMKAC	1 cut(s)	365
XspI	CTAG	2 cut(s)	285, 754
ZraI	GACGTC	1 cut(s)	363
ZrmI	AGTACT	1 cut(s)	602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.