Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0006254

Physical Location & Seq

Genomic Coordinates Reverse (-)

21052496 .. 21053469

Gene Structure 974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGAATCAAGTTTTGTTTACACTCGTGCTGGCTGAAATGGTATTGATTCTGAGCCTTTTGTTCCAAACCCCTCTGAGGAAGTTGGTGATCGTGGGGTTAGATCGATCGAAGCAAGGGCGAGGGCCATTGGTGGCGAAGAGCGTGGGAGGAACCATTCTCGTCTTCTTTAGCTCCACCATATATAGTGTATTCAGTGTTCAGAAACGTTTAACAGAGACAGGCTTTGTCAATCCAACAGATGAGGTTCTTATGGCACATCGTCTCCTAGAAGCATCTCTCATTGGGTTTTCCTTATTCCTGGCAATGGTTATAGATAGACTACACTACTATATCAAAGAGCTCCATCTGCTCCGAAAACGCGTCGAAGAAGTGAAGAATCTGAAAAAGGACCAAGAGCACAGGGAAACTATTGCTCCTGCACAAGTGAAGAAAGCCACACAGATGATAGATAAGGCAGCCGAAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 ko05165 map04141 map05165

Pfam Domains

Protein Families

Bap31

Protein Analysis

156

Amino Acids

17.54

Weight (kDa)

9.69

Isoelectric Point (pI)

28.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20450
fragaria_vesca	FvH4_3g23110
malus_domestica	MD00G1159100.v1.1 MD03G1197900.v1.1 MD11G1213800.v1.1
prunus_persica	Prupe.4G217500_v2.0.a1
pyrus_communis	pycom03g14940 pycom11g18840
rosa_chinensis	RchiOBHm_Chr5g0040711 RchiOBHm_Chr5g0040761
rosa_laevigata	RLG00000033998
rosa_multiflora	Rmu_co8328431.1_g000001 Rmu_sc0002719.1_g000002 Rmu_sc0002719.1_g000004
rosa_roxburghii	Rroxscaffold_1G00039930 Rroxscaffold_1G00039950 Rroxscaffold_1G00039960
rosa_rugosa	Rorug05G0187000
rosa_samantha	Rh5AG272800 Rh5BG277800 Rh5BG277900 Rh5CG309900 Rh5DG285700 Rh5DG285800
rosa_wichuraiana	Rw5G025590 Rw5G025630 Rw5G025650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	360
AclI	AACGTT	1 cut(s)	205
AfiI	CCNNNNNNNGG	2 cut(s)	75, 304
AflIII	ACRYGT	1 cut(s)	358
AjnI	CCWGG	1 cut(s)	297
AluBI	AGCT	3 cut(s)	171, 340, 465
AluI	AGCT	3 cut(s)	171, 340, 465
Alw21I	GWGCWC	2 cut(s)	342, 399
Alw26I	GTCTC	2 cut(s)	209, 266
AoxI	GGCC	1 cut(s)	122
ApeKI	GCWGC	1 cut(s)	455
AspS9I	GGNCC	2 cut(s)	122, 388
AsuHPI	GGTGA	1 cut(s)	97
AvaII	GGWCC	1 cut(s)	388
BanII	GRGCYC	1 cut(s)	342
BauI	CACGAG	1 cut(s)	23
BbsI	GAAGAC	1 cut(s)	154
Bbv12I	GWGCWC	2 cut(s)	342, 399
BccI	CCATC	1 cut(s)	351
BciT130I	CCWGG	1 cut(s)	299
BcoDI	GTCTC	2 cut(s)	209, 266
BfaI	CTAG	1 cut(s)	266
BisI	GCNGC	1 cut(s)	456
BlsI	GCNGC	1 cut(s)	457
Bme1390I	CCNGG	1 cut(s)	299
Bme18I	GGWCC	1 cut(s)	388
BmgT120I	GGNCC	2 cut(s)	122, 388
BmiI	GGNNCC	1 cut(s)	151
BmrFI	CCNGG	1 cut(s)	299
BmsI	GCATC	1 cut(s)	281
BpiI	GAAGAC	1 cut(s)	154
Bsa29I	ATCGAT	1 cut(s)	103
BsaXI	ACNNNNNCTCC	4 cut(s)	246, 276, 397, 427
Bsc4I	CCNNNNNNNGG	2 cut(s)	75, 304
Bse3DI	GCAATG	1 cut(s)	309
BseBI	CCWGG	1 cut(s)	299
BseCI	ATCGAT	1 cut(s)	103
BseLI	CCNNNNNNNGG	2 cut(s)	75, 304
BseMI	GCAATG	1 cut(s)	309
BseMII	CTCAG	2 cut(s)	41, 65
BsgI	GTGCAG	1 cut(s)	402
Bsh1236I	CGCG	1 cut(s)	360
Bsh1285I	CGRYCG	1 cut(s)	107
BshFI	GGCC	1 cut(s)	124
BshVI	ATCGAT	1 cut(s)	103
BsiEI	CGRYCG	1 cut(s)	107
BsiHKAI	GWGCWC	2 cut(s)	342, 399
BslI	CCNNNNNNNGG	2 cut(s)	75, 304
BsmAI	GTCTC	2 cut(s)	209, 266
BsmBI	CGTCTC	1 cut(s)	266
BsnI	GGCC	1 cut(s)	124
Bsp1286I	GDGCHC	2 cut(s)	342, 399
Bsp143I	GATC	3 cut(s)	87, 100, 104
BspANI	GGCC	1 cut(s)	124
BspCNI	CTCAG	2 cut(s)	42, 66
BspDI	ATCGAT	1 cut(s)	103
BspFNI	CGCG	1 cut(s)	360
BspLI	GGNNCC	1 cut(s)	151
BspQI	GCTCTTC	1 cut(s)	131
BsrDI	GCAATG	1 cut(s)	309
BssMI	GATC	3 cut(s)	87, 100, 104
BssSI	CACGAG	1 cut(s)	23
Bst2BI	CACGAG	1 cut(s)	23
Bst2UI	CCWGG	1 cut(s)	299
Bst6I	CTCTTC	1 cut(s)	131
BstC8I	GCNNGC	1 cut(s)	30
BstDEI	CTNAG	2 cut(s)	50, 74
BstFNI	CGCG	1 cut(s)	360
BstKTI	GATC	3 cut(s)	90, 103, 107
BstMAI	GTCTC	2 cut(s)	209, 266
BstMBI	GATC	3 cut(s)	87, 100, 104
BstMCI	CGRYCG	1 cut(s)	107
BstMWI	GCNNNNNNNGC	1 cut(s)	346
BstNI	CCWGG	1 cut(s)	299
BstSCI	CCNGG	1 cut(s)	297
BstUI	CGCG	1 cut(s)	360
BstV2I	GAAGAC	1 cut(s)	154
Bsu15I	ATCGAT	1 cut(s)	103
BsuRI	GGCC	1 cut(s)	124
BsuTUI	ATCGAT	1 cut(s)	103
BtsIMutI	CAGTG	1 cut(s)	199
Cac8I	GCNNGC	1 cut(s)	30
Cfr13I	GGNCC	2 cut(s)	122, 388
ClaI	ATCGAT	1 cut(s)	103
CseI	GACGC	1 cut(s)	349
CviJI	RGCY	9 cut(s)	32, 54, 124, 171, 222, 340, 434, 458, 465
CviKI_1	RGCY	9 cut(s)	32, 54, 124, 171, 222, 340, 434, 458, 465
DdeI	CTNAG	2 cut(s)	50, 74
DpnI	GATC	3 cut(s)	89, 102, 106
DpnII	GATC	3 cut(s)	87, 100, 104
Eam1104I	CTCTTC	1 cut(s)	131
EarI	CTCTTC	1 cut(s)	131
Ecl136II	GAGCTC	1 cut(s)	340
Eco24I	GRGCYC	1 cut(s)	342
Eco47I	GGWCC	1 cut(s)	388
Eco53kI	GAGCTC	1 cut(s)	340
EcoICRI	GAGCTC	1 cut(s)	340
EcoRII	CCWGG	1 cut(s)	297
EcoT38I	GRGCYC	1 cut(s)	342
Esp3I	CGTCTC	1 cut(s)	266
FaiI	YATR	6 cut(s)	179, 181, 183, 251, 311, 330
Fnu4HI	GCNGC	1 cut(s)	456
FriOI	GRGCYC	1 cut(s)	342
Fsp4HI	GCNGC	1 cut(s)	456
FspBI	CTAG	1 cut(s)	266
GluI	GCNGC	1 cut(s)	456
HaeIII	GGCC	1 cut(s)	124
HgaI	GACGC	1 cut(s)	349
HinfI	GANTC	3 cut(s)	4, 46, 376
HphI	GGTGA	1 cut(s)	97
Hpy166II	GTNNAC	1 cut(s)	18
Hpy188I	TCNGA	5 cut(s)	51, 75, 201, 353, 381
Hpy8I	GTNNAC	1 cut(s)	18
Hpy99I	CGWCG	1 cut(s)	365
HpyCH4IV	ACGT	1 cut(s)	205
HpyCH4V	TGCA	1 cut(s)	419
HpyF10VI	GCNNNNNNNGC	1 cut(s)	346
HpyF3I	CTNAG	2 cut(s)	50, 74
HpySE526I	ACGT	1 cut(s)	205
Kzo9I	GATC	3 cut(s)	87, 100, 104
LguI	GCTCTTC	1 cut(s)	131
LmnI	GCTCC	4 cut(s)	176, 345, 354, 418
LpnPI	CCDG	6 cut(s)	14, 204, 284, 311, 385, 429
LweI	GCATC	1 cut(s)	281
MaeI	CTAG	1 cut(s)	266
MaeII	ACGT	1 cut(s)	205
MalI	GATC	3 cut(s)	89, 102, 106
MboI	GATC	3 cut(s)	87, 100, 104
MboII	GAAGA	5 cut(s)	148, 154, 377, 385, 439
MhlI	GDGCHC	2 cut(s)	342, 399
MluI	ACGCGT	1 cut(s)	358
MmeI	TCCRAC	1 cut(s)	257
MnlI	CCTC	5 cut(s)	69, 81, 113, 140, 235
MseI	TTAA	1 cut(s)	209
MslI	CAYNNNNRTG	1 cut(s)	440
MspR9I	CCNGG	1 cut(s)	299
MvaI	CCWGG	1 cut(s)	299
MvnI	CGCG	1 cut(s)	360
MwoI	GCNNNNNNNGC	1 cut(s)	346
NdeII	GATC	3 cut(s)	87, 100, 104
NlaIV	GGNNCC	1 cut(s)	151
PciSI	GCTCTTC	1 cut(s)	131
PfeI	GAWTC	3 cut(s)	4, 46, 376
PkrI	GCNGC	1 cut(s)	457
Ple19I	CGATCG	1 cut(s)	107
Psp124BI	GAGCTC	1 cut(s)	342
Psp1406I	AACGTT	1 cut(s)	205
Psp6I	CCWGG	1 cut(s)	297
PspGI	CCWGG	1 cut(s)	297
PspN4I	GGNNCC	1 cut(s)	151
PspPI	GGNCC	2 cut(s)	122, 388
PsrI	GAACNNNNNNTAC	2 cut(s)	180, 212
PvuI	CGATCG	1 cut(s)	107
RseI	CAYNNNNRTG	1 cut(s)	440
SacI	GAGCTC	1 cut(s)	342
SapI	GCTCTTC	1 cut(s)	131
SaqAI	TTAA	1 cut(s)	209
SatI	GCNGC	1 cut(s)	456
Sau3AI	GATC	3 cut(s)	87, 100, 104
Sau96I	GGNCC	2 cut(s)	122, 388
ScrFI	CCNGG	1 cut(s)	299
SduI	GDGCHC	2 cut(s)	342, 399
SetI	ASST	5 cut(s)	173, 208, 246, 342, 467
SfaNI	GCATC	1 cut(s)	281
SinI	GGWCC	1 cut(s)	388
SmiMI	CAYNNNNRTG	1 cut(s)	440
SspMI	CTAG	1 cut(s)	266
SstI	GAGCTC	1 cut(s)	342
StyD4I	CCNGG	1 cut(s)	297
TaiI	ACGT	1 cut(s)	208
TaqI	TCGA	3 cut(s)	103, 107, 363
TfiI	GAWTC	3 cut(s)	4, 46, 376
Tru1I	TTAA	1 cut(s)	209
Tru9I	TTAA	1 cut(s)	209
TscAI	CASTG	1 cut(s)	199
TseI	GCWGC	1 cut(s)	455
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	199
VpaK11BI	GGWCC	1 cut(s)	388
XspI	CTAG	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.