pycom11g22960

protein At3g15000, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0009062
Physical Location & Seq
Reverse (-)
25988491 .. 25991170
2680 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1170 bp
ATGGCGACCCATTTCTTCTACCGCTCGCTTCCCAAGACCCAAGCCATGGCATCATTTCTCTCCCGCTCCCTCTCCACCGCCACCTCCGCCGCTTCCCTATCCACCGCCGCCCAATCTCGCTCTTCTTCGCTCTCTCTCCTCCACCGCCTCCGCCCCCTCGCCGGAGTCATGGTGTCCGCCGGCAGGCTCTCTCCTGCGGTCGTCCGGTGCTTGTCCACCAGATCGACCACGTCGTCGCTCAGAGACCCAAACCCTAACTGGTCGAACCGGCCTCCCAAGGAGACGATCCTCCTCGATGGGTGTGACTTCGAGCACTGGTTGGTTGTCATGGAGCCCCCTCAGGGTGACATCACTAGGGATGAGATCATCAATAGCTACATCAAAACCCTAGCCACCGTCGTCGGAAGTGAGGAAGAAGCAAGAATGAAGATCTACTCAGTTTCAACTAGGTGCTATTATGCATTTGGGGCACTTGTATCTGAAGAGGTGTCACTCAAAATCAAAGAGTTGCCTGGAGTCCGTTGGGTACTTCCTGATTCTTACTTGGATGTTAAGAACAAAGATTACGGAGGTGAACCTTTTATTAATGGCCAAGCTGTGCCATATGATCCCAAGTACCATGAGGAATGGATAAGAAACAATAGTCGAGCAAATGAGAGAAATAGGCGTAATGACAGACCTCGTAACTTTGACAGATCAAGGAACTTTGAAAGGAGGAGGGAAAATACTGGTCCATCTCCTATGCCTAATCAAGCTGGGCCAAATTCAGGACCTGGACCTGCCAATATGGGTCCTCCACCCCCCAACAGGGGTCCTCCACCCTCCAATATGGGTCCAGGCCCGATGGCTCCCAACATGGGTCCTCCACCCCCCAACAGGGCTCCAATGCCGCCTCACAACATGGGTCCACCAAACAACTACAATAATCCCCCGCCAAGCAGCAACTGGAACTCTGGGCCTCCCAACAACTATAATCAGGCACCTCCCAACAACTACAATCAGGCGCCTCCCAACAACTACAATCAGATGCCTCCCAATAACCCGGGAGGGGTGCCACCAAACAACATGGGTCCGCCATCTAATGCTGGATGGAATGGTGCTGGACAATACCAGAATAACTACATGCCAGACAGGGACGGTGGAGCCAATCCTGGTCCAAACCGTTACTAA

Protein Analysis

390

Amino Acids

42.75

Weight (kDa)

9.55

Isoelectric Point (pI)

61.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MORF_dom PF21864 103 - 194 1.1e-38 Multiple organellar RNA editing factor 1, MORF domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 232
Acc36I ACCTGC 1 cut(s) 787
AccB1I GGYRCC 3 cut(s) 979, 1003, 1051
AccB7I CCANNNNNTGG 1 cut(s) 46
AccBSI CCGCTC 2 cut(s) 24, 66
AclWI GGATC 2 cut(s) 280, 602
AcoI YGGCCR 1 cut(s) 589
AcsI RAATTY 1 cut(s) 763
AcuI CTGAAG 1 cut(s) 501
AcyI GRCGYC 1 cut(s) 1004
AfaI GTAC 2 cut(s) 528, 617
AgsI TTSAA 2 cut(s) 444, 710
AjiI CACGTC 1 cut(s) 231
AjnI CCWGG 4 cut(s) 511, 772, 835, 1150
AluBI AGCT 3 cut(s) 375, 596, 755
AluI AGCT 3 cut(s) 375, 596, 755
Alw21I GWGCWC 1 cut(s) 315
Alw26I GTCTC 2 cut(s) 237, 275
AlwI GGATC 2 cut(s) 280, 602
AlwNI CAGNNNCTG 2 cut(s) 773, 945
Ama87I CYCGRG 1 cut(s) 1042
AoxI GGCC 5 cut(s) 269, 589, 758, 838, 956
ApeKI GCWGC 1 cut(s) 939
ApoI RAATTY 1 cut(s) 763
AseI ATTAAT 1 cut(s) 585
AspLEI GCGC 1 cut(s) 1006
AsuC2I CCSGG 2 cut(s) 1043, 1044
AsuHPI GGTGA 2 cut(s) 356, 584
AvaI CYCGRG 1 cut(s) 1042
AxyI CCTNAGG 1 cut(s) 339
BaeGI GKGCMC 1 cut(s) 472
BalI TGGCCA 1 cut(s) 591
BanI GGYRCC 3 cut(s) 979, 1003, 1051
BanII GRGCYC 2 cut(s) 336, 883
Bbv12I GWGCWC 1 cut(s) 315
BbvI GCAGC 1 cut(s) 951
BccI CCATC 5 cut(s) 290, 742, 838, 1083, 1084
BciT130I CCWGG 4 cut(s) 513, 774, 837, 1152
BcnI CCSGG 2 cut(s) 1043, 1044
BcoDI GTCTC 2 cut(s) 237, 275
BfaI CTAG 3 cut(s) 354, 389, 447
BfoI RGCGCY 1 cut(s) 1007
BfuAI ACCTGC 1 cut(s) 787
BglII AGATCT 1 cut(s) 429
BisI GCNGC 4 cut(s) 90, 108, 890, 940
BlsI GCNGC 4 cut(s) 91, 109, 891, 941
Bme1390I CCNGG 6 cut(s) 513, 774, 837, 1043, 1044, 1152
BmeT110I CYCGRG 1 cut(s) 1042
BmgBI CACGTC 1 cut(s) 231
BmrFI CCNGG 6 cut(s) 513, 774, 837, 1043, 1044, 1152
BmsI GCATC 2 cut(s) 59, 1017
BpmI CTGGAG 1 cut(s) 534
BpuMI CCSGG 2 cut(s) 1043, 1044
BsaHI GRCGYC 1 cut(s) 1004
BsaI GGTCTC 1 cut(s) 237
BsaJI CCNNGG 3 cut(s) 45, 276, 1042
BsaWI WCCGGW 1 cut(s) 204
BsaXI ACNNNNNCTCC 2 cut(s) 156, 186
Bse118I RCCGGY 2 cut(s) 179, 267
Bse1I ACTGG 4 cut(s) 263, 320, 733, 950
Bse21I CCTNAGG 1 cut(s) 339
BseBI CCWGG 4 cut(s) 513, 774, 837, 1152
BseDI CCNNGG 3 cut(s) 45, 276, 1042
BseGI GGATG 3 cut(s) 364, 553, 1094
BseMII CTCAG 3 cut(s) 253, 353, 450
BseNI ACTGG 4 cut(s) 263, 320, 733, 950
BseRI GAGGAG 3 cut(s) 128, 281, 730
BseSI GKGCMC 1 cut(s) 472
BseXI GCAGC 1 cut(s) 951
BseYI CCCAGC 1 cut(s) 755
Bsh1285I CGRYCG 1 cut(s) 201
BshFI GGCC 5 cut(s) 271, 591, 760, 840, 958
BshNI GGYRCC 3 cut(s) 979, 1003, 1051
BsiEI CGRYCG 1 cut(s) 201
BsiHKAI GWGCWC 1 cut(s) 315
BsiHKCI CYCGRG 1 cut(s) 1042
BsiSI CCGG 5 cut(s) 162, 180, 205, 268, 1043
BslFI GGGAC 1 cut(s) 1148
BsmAI GTCTC 2 cut(s) 237, 275
BsmBI CGTCTC 1 cut(s) 275
BsmFI GGGAC 1 cut(s) 1148
BsnI GGCC 5 cut(s) 271, 591, 760, 840, 958
Bso31I GGTCTC 1 cut(s) 237
BsoBI CYCGRG 1 cut(s) 1042
Bsp1286I GDGCHC 4 cut(s) 315, 336, 472, 883
Bsp143I GATC 6 cut(s) 221, 285, 363, 429, 607, 695
Bsp19I CCATGG 1 cut(s) 45
BspANI GGCC 5 cut(s) 271, 591, 760, 840, 958
BspCNI CTCAG 3 cut(s) 252, 352, 449
BspMI ACCTGC 1 cut(s) 787
BspPI GGATC 2 cut(s) 280, 602
BspQI GCTCTTC 1 cut(s) 127
BspT107I GGYRCC 3 cut(s) 979, 1003, 1051
BspTNI GGTCTC 1 cut(s) 237
BsrBI CCGCTC 2 cut(s) 24, 66
BsrFI RCCGGY 2 cut(s) 179, 267
BsrI ACTGG 4 cut(s) 263, 320, 733, 950
BssAI RCCGGY 2 cut(s) 179, 267
BssECI CCNNGG 3 cut(s) 45, 276, 1042
BssMI GATC 6 cut(s) 221, 285, 363, 429, 607, 695
BssNI GRCGYC 1 cut(s) 1004
BssT1I CCWWGG 2 cut(s) 45, 276
Bst2UI CCWGG 4 cut(s) 513, 774, 837, 1152
Bst4CI ACNGT 3 cut(s) 397, 1139, 1163
Bst6I CTCTTC 2 cut(s) 127, 477
BstACI GRCGYC 1 cut(s) 1004
BstC8I GCNNGC 3 cut(s) 26, 181, 185
BstDEI CTNAG 3 cut(s) 239, 339, 436
BstDSI CCRYGG 1 cut(s) 45
BstF5I GGATG 3 cut(s) 364, 553, 1094
BstH2I RGCGCY 1 cut(s) 1007
BstHHI GCGC 1 cut(s) 1006
BstKTI GATC 6 cut(s) 224, 288, 366, 432, 610, 698
BstMAI GTCTC 2 cut(s) 237, 275
BstMBI GATC 6 cut(s) 221, 285, 363, 429, 607, 695
BstMCI CGRYCG 1 cut(s) 201
BstMWI GCNNNNNNNGC 2 cut(s) 86, 467
BstNI CCWGG 4 cut(s) 513, 774, 837, 1152
BstNSI RCATGY 1 cut(s) 1126
BstSCI CCNGG 6 cut(s) 511, 772, 835, 1041, 1042, 1150
BstSLI GKGCMC 1 cut(s) 472
BstV1I GCAGC 1 cut(s) 951
BstX2I RGATCY 1 cut(s) 429
BstYI RGATCY 1 cut(s) 429
Bsu36I CCTNAGG 1 cut(s) 339
BsuRI GGCC 5 cut(s) 271, 591, 760, 840, 958
BtgI CCRYGG 1 cut(s) 45
BtrI CACGTC 1 cut(s) 231
BtsCI GGATG 3 cut(s) 364, 553, 1094
BtsIMutI CAGTG 1 cut(s) 313
BveI ACCTGC 1 cut(s) 787
Cac8I GCNNGC 3 cut(s) 26, 181, 185
CaiI CAGNNNCTG 2 cut(s) 773, 945
CfoI GCGC 1 cut(s) 1006
Cfr10I RCCGGY 2 cut(s) 179, 267
Cfr9I CCCGGG 1 cut(s) 1042
Csp6I GTAC 2 cut(s) 527, 616
CviAII CATG 8 cut(s) 46, 169, 328, 620, 856, 901, 1066, 1123
CviQI GTAC 2 cut(s) 527, 616
DdeI CTNAG 3 cut(s) 239, 339, 436
DinI GGCGCC 1 cut(s) 1005
DpnI GATC 6 cut(s) 223, 287, 365, 431, 609, 697
DpnII GATC 6 cut(s) 221, 285, 363, 429, 607, 695
DrdI GACNNNNNNGTC 1 cut(s) 232
DseDI GACNNNNNNGTC 1 cut(s) 232
EaeI YGGCCR 1 cut(s) 589
Eam1104I CTCTTC 2 cut(s) 127, 477
EarI CTCTTC 2 cut(s) 127, 477
EciI GGCGGA 4 cut(s) 76, 140, 166, 1062
Eco130I CCWWGG 2 cut(s) 45, 276
Eco24I GRGCYC 2 cut(s) 336, 883
Eco31I GGTCTC 1 cut(s) 237
Eco57I CTGAAG 1 cut(s) 501
Eco81I CCTNAGG 1 cut(s) 339
Eco88I CYCGRG 1 cut(s) 1042
EcoO109I RGGNCCY 4 cut(s) 770, 791, 812, 860
EcoRII CCWGG 4 cut(s) 511, 772, 835, 1150
EcoT14I CCWWGG 2 cut(s) 45, 276
EcoT22I ATGCAT 1 cut(s) 463
EcoT38I GRGCYC 2 cut(s) 336, 883
EgeI GGCGCC 1 cut(s) 1005
EheI GGCGCC 1 cut(s) 1005
ErhI CCWWGG 2 cut(s) 45, 276
Esp3I CGTCTC 1 cut(s) 275
FaeI CATG 8 cut(s) 49, 172, 331, 623, 859, 904, 1069, 1126
FaqI GGGAC 1 cut(s) 1148
FatI CATG 8 cut(s) 45, 168, 327, 619, 855, 900, 1065, 1122
FauI CCCGC 2 cut(s) 71, 939
FauNDI CATATG 1 cut(s) 604
Fnu4HI GCNGC 4 cut(s) 90, 108, 890, 940
FokI GGATG 3 cut(s) 371, 560, 1101
FriOI GRGCYC 2 cut(s) 336, 883
Fsp4HI GCNGC 4 cut(s) 90, 108, 890, 940
FspBI CTAG 3 cut(s) 354, 389, 447
GlaI GCGC 1 cut(s) 1005
GluI GCNGC 4 cut(s) 90, 108, 890, 940
GsaI CCCAGC 1 cut(s) 759
GsuI CTGGAG 1 cut(s) 534
HaeII RGCGCY 1 cut(s) 1007
HaeIII GGCC 5 cut(s) 271, 591, 760, 840, 958
HapII CCGG 5 cut(s) 162, 180, 205, 268, 1043
HhaI GCGC 1 cut(s) 1006
Hin1I GRCGYC 1 cut(s) 1004
Hin1II CATG 8 cut(s) 49, 172, 331, 623, 859, 904, 1069, 1126
Hin6I GCGC 1 cut(s) 1004
HinP1I GCGC 1 cut(s) 1004
HinfI GANTC 3 cut(s) 165, 516, 536
HpaII CCGG 5 cut(s) 162, 180, 205, 268, 1043
HphI GGTGA 2 cut(s) 356, 584
Hpy166II GTNNAC 3 cut(s) 216, 575, 908
Hpy188I TCNGA 4 cut(s) 242, 404, 481, 1026
Hpy188III TCNNGA 2 cut(s) 533, 768
Hpy8I GTNNAC 3 cut(s) 216, 575, 908
Hpy99I CGWCG 4 cut(s) 235, 238, 401, 404
HpyCH4III ACNGT 3 cut(s) 397, 1139, 1163
HpyCH4IV ACGT 1 cut(s) 230
HpyCH4V TGCA 1 cut(s) 461
HpyF10VI GCNNNNNNNGC 2 cut(s) 86, 467
HpyF3I CTNAG 3 cut(s) 239, 339, 436
HpySE526I ACGT 1 cut(s) 230
Hsp92I GRCGYC 1 cut(s) 1004
Hsp92II CATG 8 cut(s) 49, 172, 331, 623, 859, 904, 1069, 1126
HspAI GCGC 1 cut(s) 1004
KasI GGCGCC 1 cut(s) 1003
KroI GCCGGC 1 cut(s) 179
KroNI GCCGGC 1 cut(s) 181
Kzo9I GATC 6 cut(s) 221, 285, 363, 429, 607, 695
LguI GCTCTTC 1 cut(s) 127
LmnI GCTCC 5 cut(s) 71, 331, 853, 886, 1142
Lsp1109I GCAGC 1 cut(s) 951
LweI GCATC 2 cut(s) 59, 1017
MaeI CTAG 3 cut(s) 354, 389, 447
MaeII ACGT 1 cut(s) 230
MaeIII GTNAC 5 cut(s) 302, 344, 489, 683, 1163
MalI GATC 6 cut(s) 223, 287, 365, 431, 609, 697
MbiI CCGCTC 2 cut(s) 24, 66
MboI GATC 6 cut(s) 221, 285, 363, 429, 607, 695
MboII GAAGA 6 cut(s) 7, 114, 117, 425, 439, 494
MflI RGATCY 1 cut(s) 429
MhlI GDGCHC 4 cut(s) 315, 336, 472, 883
MlsI TGGCCA 1 cut(s) 591
MluCI AATT 1 cut(s) 763
MluNI TGGCCA 1 cut(s) 591
Mly113I GGCGCC 1 cut(s) 1004
MlyI GAGTC 2 cut(s) 174, 525
MmeI TCCRAC 1 cut(s) 382
Mox20I TGGCCA 1 cut(s) 591
Mph1103I ATGCAT 1 cut(s) 463
MroNI GCCGGC 1 cut(s) 179
MscI TGGCCA 1 cut(s) 591
MseI TTAA 2 cut(s) 552, 585
Msp20I TGGCCA 1 cut(s) 591
MspI CCGG 5 cut(s) 162, 180, 205, 268, 1043
MspR9I CCNGG 6 cut(s) 513, 774, 837, 1043, 1044, 1152
MvaI CCWGG 4 cut(s) 513, 774, 837, 1152
MwoI GCNNNNNNNGC 2 cut(s) 86, 467
NaeI GCCGGC 1 cut(s) 181
NarI GGCGCC 1 cut(s) 1004
NciI CCSGG 2 cut(s) 1043, 1044
NcoI CCATGG 1 cut(s) 45
NdeI CATATG 1 cut(s) 604
NdeII GATC 6 cut(s) 221, 285, 363, 429, 607, 695
NgoMIV GCCGGC 1 cut(s) 179
NlaIII CATG 8 cut(s) 49, 172, 331, 623, 859, 904, 1069, 1126
NmuCI GTSAC 3 cut(s) 302, 344, 489
NsiI ATGCAT 1 cut(s) 463
NspI RCATGY 1 cut(s) 1126
PciSI GCTCTTC 1 cut(s) 127
PcsI WCGNNNNNNNCGW 1 cut(s) 230
PdiI GCCGGC 1 cut(s) 181
PfeI GAWTC 1 cut(s) 536
PflFI GACNNNGTC 1 cut(s) 229
PflMI CCANNNNNTGG 1 cut(s) 46
PkrI GCNGC 4 cut(s) 91, 109, 891, 941
PleI GAGTC 2 cut(s) 173, 524
PluTI GGCGCC 1 cut(s) 1007
PpsI GAGTC 2 cut(s) 173, 524
PpuMI RGGWCCY 4 cut(s) 770, 791, 812, 860
PshBI ATTAAT 1 cut(s) 585
Psp5II RGGWCCY 4 cut(s) 770, 791, 812, 860
Psp6I CCWGG 4 cut(s) 511, 772, 835, 1150
PspFI CCCAGC 1 cut(s) 755
PspGI CCWGG 4 cut(s) 511, 772, 835, 1150
PspPPI RGGWCCY 4 cut(s) 770, 791, 812, 860
PsrI GAACNNNNNNTAC 2 cut(s) 548, 580
PstNI CAGNNNCTG 2 cut(s) 773, 945
PsuI RGATCY 1 cut(s) 429
PsyI GACNNNGTC 1 cut(s) 229
RsaI GTAC 2 cut(s) 528, 617
RsaNI GTAC 2 cut(s) 527, 616
SapI GCTCTTC 1 cut(s) 127
SaqAI TTAA 2 cut(s) 552, 585
SatI GCNGC 4 cut(s) 90, 108, 890, 940
Sau3AI GATC 6 cut(s) 221, 285, 363, 429, 607, 695
SchI GAGTC 2 cut(s) 174, 525
ScrFI CCNGG 6 cut(s) 513, 774, 837, 1043, 1044, 1152
SduI GDGCHC 4 cut(s) 315, 336, 472, 883
SfaNI GCATC 2 cut(s) 59, 1017
SfoI GGCGCC 1 cut(s) 1005
SmaI CCCGGG 1 cut(s) 1044
Sse9I AATT 1 cut(s) 763
SspDI GGCGCC 1 cut(s) 1003
SspMI CTAG 3 cut(s) 354, 389, 447
StyD4I CCNGG 6 cut(s) 511, 772, 835, 1041, 1042, 1150
StyI CCWWGG 2 cut(s) 45, 276
TaaI ACNGT 3 cut(s) 397, 1139, 1163
TaiI ACGT 1 cut(s) 233
TaqI TCGA 5 cut(s) 224, 263, 294, 309, 646
TasI AATT 1 cut(s) 763
TauI GCSGC 3 cut(s) 92, 110, 892
TfiI GAWTC 1 cut(s) 536
Tru1I TTAA 2 cut(s) 552, 585
Tru9I TTAA 2 cut(s) 552, 585
TscAI CASTG 1 cut(s) 320
TseFI GTSAC 3 cut(s) 302, 344, 489
TseI GCWGC 1 cut(s) 939
Tsp45I GTSAC 3 cut(s) 302, 344, 489
TspDTI ATGAA 1 cut(s) 440
TspGWI ACGGA 2 cut(s) 509, 582
TspMI CCCGGG 1 cut(s) 1042
TspRI CASTG 1 cut(s) 320
Tth111I GACNNNGTC 1 cut(s) 229
Van91I CCANNNNNTGG 1 cut(s) 46
VspI ATTAAT 1 cut(s) 585
XapI RAATTY 1 cut(s) 763
XceI RCATGY 1 cut(s) 1126
XcmI CCANNNNNNNNNTGG 2 cut(s) 255, 942
XmaI CCCGGG 1 cut(s) 1042
XspI CTAG 3 cut(s) 354, 389, 447
Zsp2I ATGCAT 1 cut(s) 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.